HEADER IMMUNE SYSTEM 16-MAY-23 8JEP TITLE CRYSTAL STRUCTURE OF OCIPERLIMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IMMUNOTHERAPY, ANTIBODY, CHECKPOINT INHIBITOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.SUN,X.X.ZHANG,J.SONG REVDAT 3 22-MAY-24 8JEP 1 JRNL REVDAT 2 20-MAR-24 8JEP 1 JRNL REVDAT 1 28-FEB-24 8JEP 0 JRNL AUTH J.SUN,X.ZHANG,L.XUE,L.CHENG,J.ZHANG,X.CHEN,Z.SHEN,K.LI, JRNL AUTH 2 L.WANG,C.HUANG,J.SONG JRNL TITL STRUCTURAL INSIGHTS INTO THE UNIQUE PH-RESPONSIVE JRNL TITL 2 CHARACTERISTICS OF THE ANTI-TIGIT THERAPEUTIC ANTIBODY JRNL TITL 3 OCIPERLIMAB. JRNL REF STRUCTURE V. 32 550 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38460520 JRNL DOI 10.1016/J.STR.2024.02.009 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 126121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 6289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8600 - 5.2700 0.99 4248 229 0.1795 0.2079 REMARK 3 2 5.2700 - 4.1900 1.00 4134 194 0.1380 0.1439 REMARK 3 3 4.1900 - 3.6600 1.00 4105 202 0.1581 0.1934 REMARK 3 4 3.6600 - 3.3300 1.00 4047 199 0.1706 0.2047 REMARK 3 5 3.3300 - 3.0900 1.00 4068 205 0.1809 0.1968 REMARK 3 6 3.0900 - 2.9100 1.00 4029 198 0.1985 0.2017 REMARK 3 7 2.9100 - 2.7600 1.00 3990 213 0.1937 0.2199 REMARK 3 8 2.7600 - 2.6400 1.00 4026 189 0.1974 0.2255 REMARK 3 9 2.6400 - 2.5400 1.00 3986 208 0.2002 0.2341 REMARK 3 10 2.5400 - 2.4500 1.00 4014 215 0.2070 0.2325 REMARK 3 11 2.4500 - 2.3700 1.00 4007 199 0.2061 0.2413 REMARK 3 12 2.3700 - 2.3100 1.00 3999 200 0.2093 0.2566 REMARK 3 13 2.3100 - 2.2500 1.00 3965 223 0.2020 0.2451 REMARK 3 14 2.2500 - 2.1900 1.00 3960 212 0.2034 0.2427 REMARK 3 15 2.1900 - 2.1400 1.00 3974 221 0.2043 0.2363 REMARK 3 16 2.1400 - 2.1000 1.00 3956 233 0.1995 0.2028 REMARK 3 17 2.1000 - 2.0500 1.00 3914 230 0.2045 0.2216 REMARK 3 18 2.0500 - 2.0200 1.00 3946 245 0.2075 0.2423 REMARK 3 19 2.0200 - 1.9800 1.00 3943 222 0.2084 0.2170 REMARK 3 20 1.9800 - 1.9500 1.00 3984 219 0.2107 0.2419 REMARK 3 21 1.9500 - 1.9100 1.00 3949 193 0.2237 0.2665 REMARK 3 22 1.9100 - 1.8900 1.00 3973 189 0.2292 0.2368 REMARK 3 23 1.8900 - 1.8600 1.00 3994 203 0.2250 0.2377 REMARK 3 24 1.8600 - 1.8300 1.00 3946 199 0.2144 0.2307 REMARK 3 25 1.8300 - 1.8100 1.00 3930 225 0.2206 0.2345 REMARK 3 26 1.8100 - 1.7800 1.00 3940 213 0.2269 0.2406 REMARK 3 27 1.7800 - 1.7600 1.00 3913 225 0.2425 0.2698 REMARK 3 28 1.7600 - 1.7400 1.00 3994 191 0.2542 0.3153 REMARK 3 29 1.7400 - 1.7200 1.00 3932 208 0.2616 0.3116 REMARK 3 30 1.7200 - 1.7000 1.00 3966 187 0.2646 0.3146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6702 REMARK 3 ANGLE : 0.852 9119 REMARK 3 CHIRALITY : 0.055 1021 REMARK 3 PLANARITY : 0.006 1164 REMARK 3 DIHEDRAL : 13.353 928 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.3606 60.8528 110.7061 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.2566 REMARK 3 T33: 0.2805 T12: -0.0054 REMARK 3 T13: -0.0008 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0795 L22: 0.2544 REMARK 3 L33: 0.9108 L12: -0.1447 REMARK 3 L13: 0.2057 L23: -0.6282 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0015 S13: -0.0280 REMARK 3 S21: 0.0089 S22: 0.0492 S23: 0.0097 REMARK 3 S31: 0.0395 S32: -0.0197 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 23-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 26.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 1.14500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M SODIUM CITRATE PH 5.6, 19% REMARK 280 ISOPROPANOL, 19% PEG4000, 5% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 135 REMARK 465 SER A 136 REMARK 465 THR A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 SER C 134 REMARK 465 LYS C 135 REMARK 465 SER C 136 REMARK 465 THR C 137 REMARK 465 SER C 138 REMARK 465 GLY C 139 REMARK 465 GLY C 140 REMARK 465 HIS C 223 REMARK 465 HIS C 224 REMARK 465 HIS C 225 REMARK 465 HIS C 226 REMARK 465 HIS C 227 REMARK 465 HIS C 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 492 O HOH B 496 1.83 REMARK 500 O HOH B 347 O HOH B 414 1.84 REMARK 500 O HOH C 458 O HOH D 408 1.86 REMARK 500 O HOH D 385 O HOH D 450 1.87 REMARK 500 O HOH A 342 O HOH A 479 1.93 REMARK 500 O HOH B 481 O HOH B 503 1.94 REMARK 500 O HOH A 447 O HOH A 479 1.99 REMARK 500 O HOH A 483 O HOH A 500 2.00 REMARK 500 NZ LYS C 65 O HOH C 301 2.02 REMARK 500 O HOH C 305 O HOH C 324 2.03 REMARK 500 O HOH B 463 O HOH B 493 2.03 REMARK 500 O PRO C 132 O HOH C 302 2.04 REMARK 500 O HOH B 476 O HOH B 500 2.06 REMARK 500 O HOH A 505 O HOH A 513 2.07 REMARK 500 O HOH A 382 O HOH A 479 2.07 REMARK 500 O HOH C 412 O HOH C 432 2.08 REMARK 500 O HOH A 416 O HOH A 472 2.09 REMARK 500 O HOH D 375 O HOH D 436 2.10 REMARK 500 OE1 GLU D 195 O HOH D 301 2.10 REMARK 500 O HOH C 393 O HOH C 463 2.12 REMARK 500 NE ARG B 54 O HOH B 301 2.14 REMARK 500 O HOH D 451 O HOH D 454 2.15 REMARK 500 NE2 GLN A 111 O HOH A 301 2.16 REMARK 500 O HOH A 398 O HOH B 457 2.18 REMARK 500 O HOH D 449 O HOH D 461 2.18 REMARK 500 NH2 ARG A 19 O HOH A 302 2.19 REMARK 500 O TYR B 94 O HOH B 302 2.19 REMARK 500 O HOH C 394 O HOH C 460 2.19 REMARK 500 O HOH B 428 O HOH B 498 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 470 O HOH C 461 3546 1.83 REMARK 500 O HOH B 441 O HOH C 462 3556 1.98 REMARK 500 O HOH A 462 O HOH B 437 4566 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 96 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 CYS C 96 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 150 66.30 73.01 REMARK 500 SER B 7 -76.83 -75.12 REMARK 500 ALA B 51 -35.58 65.03 REMARK 500 ASN B 152 -6.98 79.07 REMARK 500 ASP C 150 61.75 71.26 REMARK 500 ALA D 51 -39.55 72.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 8JEP A 1 228 PDB 8JEP 8JEP 1 228 DBREF 8JEP B 1 214 PDB 8JEP 8JEP 1 214 DBREF 8JEP C 1 228 PDB 8JEP 8JEP 1 228 DBREF 8JEP D 1 214 PDB 8JEP 8JEP 1 214 SEQRES 1 A 228 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 228 PHE THR PHE SER ASP TYR TYR MET TYR TRP VAL ARG GLN SEQRES 4 A 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA TYR ILE THR SEQRES 5 A 228 LYS GLY GLY GLY SER THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 A 228 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 228 ALA VAL TYR TYR CYS ALA ARG GLN THR ASN TYR ASP PHE SEQRES 9 A 228 THR MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 228 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 A 228 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 A 228 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 A 228 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 A 228 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 A 228 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 A 228 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 A 228 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 A 228 CYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 214 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 B 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS LYS ALA SER SEQRES 3 B 214 GLN ASP VAL GLY THR SER VAL ALA TRP TYR GLN GLN LYS SEQRES 4 B 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR TRP ALA SER SEQRES 5 B 214 ALA ARG HIS THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 214 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 B 214 SER SER TYR PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 B 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 B 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 214 PHE ASN ARG GLY GLU CYS SEQRES 1 C 228 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 228 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 228 PHE THR PHE SER ASP TYR TYR MET TYR TRP VAL ARG GLN SEQRES 4 C 228 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA TYR ILE THR SEQRES 5 C 228 LYS GLY GLY GLY SER THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 C 228 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 228 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 228 ALA VAL TYR TYR CYS ALA ARG GLN THR ASN TYR ASP PHE SEQRES 9 C 228 THR MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 C 228 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 C 228 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 C 228 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 C 228 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 C 228 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 C 228 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 C 228 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 C 228 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 C 228 CYS HIS HIS HIS HIS HIS HIS SEQRES 1 D 214 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 D 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS LYS ALA SER SEQRES 3 D 214 GLN ASP VAL GLY THR SER VAL ALA TRP TYR GLN GLN LYS SEQRES 4 D 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR TRP ALA SER SEQRES 5 D 214 ALA ARG HIS THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 D 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 214 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 D 214 SER SER TYR PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 D 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 D 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 D 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 D 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 D 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 D 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 D 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 D 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 D 214 PHE ASN ARG GLY GLU CYS FORMUL 5 HOH *798(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 SER A 162 ALA A 164 5 3 HELIX 4 AA4 SER A 193 LEU A 195 5 3 HELIX 5 AA5 LYS A 207 ASN A 210 5 4 HELIX 6 AA6 GLN B 79 PHE B 83 5 5 HELIX 7 AA7 SER B 121 SER B 127 1 7 HELIX 8 AA8 LYS B 183 GLU B 187 1 5 HELIX 9 AA9 THR C 28 TYR C 32 5 5 HELIX 10 AB1 ARG C 87 THR C 91 5 5 HELIX 11 AB2 SER C 162 ALA C 164 5 3 HELIX 12 AB3 PRO C 191 GLY C 196 5 6 HELIX 13 AB4 LYS C 207 ASN C 210 5 4 HELIX 14 AB5 GLN D 79 PHE D 83 5 5 HELIX 15 AB6 SER D 121 SER D 127 1 7 HELIX 16 AB7 LYS D 183 LYS D 188 1 6 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 113 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 AA2 6 ALA A 92 GLN A 99 -1 N ALA A 92 O VAL A 115 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O VAL A 48 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 59 -1 O TYR A 59 N TYR A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 113 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 AA3 4 ALA A 92 GLN A 99 -1 N ALA A 92 O VAL A 115 SHEET 4 AA3 4 MET A 106 TRP A 109 -1 O TYR A 108 N ARG A 98 SHEET 1 AA4 4 SER A 126 LEU A 130 0 SHEET 2 AA4 4 THR A 141 TYR A 151 -1 O LEU A 147 N PHE A 128 SHEET 3 AA4 4 TYR A 182 PRO A 191 -1 O LEU A 184 N VAL A 148 SHEET 4 AA4 4 VAL A 169 THR A 171 -1 N HIS A 170 O VAL A 187 SHEET 1 AA5 4 SER A 126 LEU A 130 0 SHEET 2 AA5 4 THR A 141 TYR A 151 -1 O LEU A 147 N PHE A 128 SHEET 3 AA5 4 TYR A 182 PRO A 191 -1 O LEU A 184 N VAL A 148 SHEET 4 AA5 4 VAL A 175 LEU A 176 -1 N VAL A 175 O SER A 183 SHEET 1 AA6 3 THR A 157 TRP A 160 0 SHEET 2 AA6 3 ILE A 201 HIS A 206 -1 O ASN A 203 N SER A 159 SHEET 3 AA6 3 THR A 211 LYS A 216 -1 O VAL A 213 N VAL A 204 SHEET 1 AA7 4 MET B 4 GLN B 6 0 SHEET 2 AA7 4 ALA B 19 ALA B 25 -1 O LYS B 24 N THR B 5 SHEET 3 AA7 4 GLU B 70 ILE B 75 -1 O LEU B 73 N LEU B 21 SHEET 4 AA7 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA8 6 THR B 10 VAL B 13 0 SHEET 2 AA8 6 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA8 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA8 6 VAL B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA8 6 ARG B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA8 6 ALA B 53 ARG B 54 -1 O ALA B 53 N TYR B 49 SHEET 1 AA9 4 THR B 10 VAL B 13 0 SHEET 2 AA9 4 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA9 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA9 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O ASN B 137 N SER B 114 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O LEU B 181 N ALA B 130 SHEET 4 AB1 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 AB2 4 ALA B 153 GLN B 155 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N TRP B 148 O GLN B 155 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O THR B 197 N LYS B 145 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AB3 4 GLN C 3 SER C 7 0 SHEET 2 AB3 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AB3 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AB3 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AB4 6 LEU C 11 VAL C 12 0 SHEET 2 AB4 6 THR C 113 VAL C 117 1 O THR C 116 N VAL C 12 SHEET 3 AB4 6 ALA C 92 GLN C 99 -1 N TYR C 94 O THR C 113 SHEET 4 AB4 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AB4 6 GLU C 46 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AB4 6 THR C 58 TYR C 59 -1 O TYR C 59 N TYR C 50 SHEET 1 AB5 4 LEU C 11 VAL C 12 0 SHEET 2 AB5 4 THR C 113 VAL C 117 1 O THR C 116 N VAL C 12 SHEET 3 AB5 4 ALA C 92 GLN C 99 -1 N TYR C 94 O THR C 113 SHEET 4 AB5 4 MET C 106 TRP C 109 -1 O TYR C 108 N ARG C 98 SHEET 1 AB6 4 SER C 126 LEU C 130 0 SHEET 2 AB6 4 ALA C 142 TYR C 151 -1 O GLY C 145 N LEU C 130 SHEET 3 AB6 4 TYR C 182 VAL C 190 -1 O VAL C 190 N ALA C 142 SHEET 4 AB6 4 VAL C 169 THR C 171 -1 N HIS C 170 O VAL C 187 SHEET 1 AB7 4 SER C 126 LEU C 130 0 SHEET 2 AB7 4 ALA C 142 TYR C 151 -1 O GLY C 145 N LEU C 130 SHEET 3 AB7 4 TYR C 182 VAL C 190 -1 O VAL C 190 N ALA C 142 SHEET 4 AB7 4 VAL C 175 LEU C 176 -1 N VAL C 175 O SER C 183 SHEET 1 AB8 3 THR C 157 TRP C 160 0 SHEET 2 AB8 3 ILE C 201 HIS C 206 -1 O ASN C 203 N SER C 159 SHEET 3 AB8 3 THR C 211 LYS C 216 -1 O THR C 211 N HIS C 206 SHEET 1 AB9 4 MET D 4 THR D 5 0 SHEET 2 AB9 4 ALA D 19 ALA D 25 -1 O LYS D 24 N THR D 5 SHEET 3 AB9 4 GLU D 70 ILE D 75 -1 O LEU D 73 N LEU D 21 SHEET 4 AB9 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 AC1 6 THR D 10 VAL D 13 0 SHEET 2 AC1 6 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AC1 6 ALA D 84 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AC1 6 VAL D 33 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 AC1 6 ARG D 45 TYR D 49 -1 O LEU D 47 N TRP D 35 SHEET 6 AC1 6 ALA D 53 ARG D 54 -1 O ALA D 53 N TYR D 49 SHEET 1 AC2 4 THR D 10 VAL D 13 0 SHEET 2 AC2 4 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AC2 4 ALA D 84 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AC2 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SHEET 1 AC3 4 SER D 114 PHE D 118 0 SHEET 2 AC3 4 THR D 129 PHE D 139 -1 O LEU D 135 N PHE D 116 SHEET 3 AC3 4 TYR D 173 SER D 182 -1 O LEU D 181 N ALA D 130 SHEET 4 AC3 4 SER D 159 VAL D 163 -1 N GLN D 160 O THR D 178 SHEET 1 AC4 4 ALA D 153 LEU D 154 0 SHEET 2 AC4 4 LYS D 145 VAL D 150 -1 N VAL D 150 O ALA D 153 SHEET 3 AC4 4 VAL D 191 THR D 197 -1 O GLU D 195 N GLN D 147 SHEET 4 AC4 4 VAL D 205 ASN D 210 -1 O LYS D 207 N CYS D 194 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 146 CYS A 202 1555 1555 2.08 SSBOND 3 CYS A 222 CYS B 214 1555 1555 2.02 SSBOND 4 CYS B 23 CYS B 88 1555 1555 2.02 SSBOND 5 CYS B 134 CYS B 194 1555 1555 2.03 SSBOND 6 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 7 CYS C 146 CYS C 202 1555 1555 2.02 SSBOND 8 CYS C 222 CYS D 214 1555 1555 2.03 SSBOND 9 CYS D 23 CYS D 88 1555 1555 2.04 SSBOND 10 CYS D 134 CYS D 194 1555 1555 2.03 CISPEP 1 PHE A 152 PRO A 153 0 -7.34 CISPEP 2 GLU A 154 PRO A 155 0 0.47 CISPEP 3 TYR B 94 PRO B 95 0 -2.90 CISPEP 4 TYR B 140 PRO B 141 0 1.47 CISPEP 5 PHE C 152 PRO C 153 0 -8.50 CISPEP 6 GLU C 154 PRO C 155 0 -0.46 CISPEP 7 SER D 7 PRO D 8 0 12.50 CISPEP 8 TYR D 94 PRO D 95 0 -0.54 CISPEP 9 TYR D 140 PRO D 141 0 1.32 CRYST1 63.500 112.300 159.880 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006255 0.00000