HEADER PROTEIN FIBRIL 16-MAY-23 8JEX TITLE CRYO-EM STRUCTURE OF ALPHA-SYNUCLEIN GS87 FIBRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-SYNUCLEIN; COMPND 3 CHAIN: H, P, G, B, K, A; COMPND 4 SYNONYM: NON-A BETA COMPONENT OF AD AMYLOID,NON-A4 COMPONENT OF COMPND 5 AMYLOID PRECURSOR,NACP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UNVERIFIED AMINO ACID CHAIN; COMPND 9 CHAIN: J, Q, I, D, L, C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNCA, NACP, PARK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN FIBRIL, AMYLOID EXPDTA ELECTRON MICROSCOPY AUTHOR W.C.XIA,Y.P.SUN,C.LIU REVDAT 2 08-MAY-24 8JEX 1 JRNL REVDAT 1 17-APR-24 8JEX 0 JRNL AUTH J.HU,W.XIA,S.ZENG,Y.J.LIM,Y.TAO,Y.SUN,L.ZHAO,H.WANG,W.LE, JRNL AUTH 2 D.LI,S.ZHANG,C.LIU,Y.M.LI JRNL TITL PHOSPHORYLATION AND O-GLCNACYLATION AT THE SAME JRNL TITL 2 ALPHA-SYNUCLEIN SITE GENERATE DISTINCT FIBRIL STRUCTURES. JRNL REF NAT COMMUN V. 15 2677 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38538591 JRNL DOI 10.1038/S41467-024-46898-1 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 24910 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8JEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037685. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF ALPHA REMARK 245 -SYNUCLEIN GS87 FIBRIL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 12-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 12-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, J, P, Q, G, I, B, D, K, L, REMARK 350 AND CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H 1 REMARK 465 ASP H 2 REMARK 465 VAL H 3 REMARK 465 PHE H 4 REMARK 465 MET H 5 REMARK 465 LYS H 6 REMARK 465 GLY H 7 REMARK 465 LEU H 8 REMARK 465 SER H 9 REMARK 465 LYS H 10 REMARK 465 ALA H 11 REMARK 465 LYS H 12 REMARK 465 GLU H 13 REMARK 465 GLY H 14 REMARK 465 VAL H 15 REMARK 465 VAL H 16 REMARK 465 ALA H 17 REMARK 465 ALA H 18 REMARK 465 ALA H 19 REMARK 465 GLU H 20 REMARK 465 LYS H 21 REMARK 465 THR H 22 REMARK 465 LYS H 23 REMARK 465 GLN H 24 REMARK 465 GLY H 25 REMARK 465 VAL H 26 REMARK 465 ALA H 27 REMARK 465 GLU H 28 REMARK 465 ALA H 29 REMARK 465 ALA H 30 REMARK 465 GLY H 31 REMARK 465 LYS H 32 REMARK 465 THR H 33 REMARK 465 LYS H 34 REMARK 465 ALA H 90 REMARK 465 ALA H 91 REMARK 465 THR H 92 REMARK 465 GLY H 93 REMARK 465 PHE H 94 REMARK 465 VAL H 95 REMARK 465 LYS H 96 REMARK 465 LYS H 97 REMARK 465 ASP H 98 REMARK 465 GLN H 99 REMARK 465 LEU H 100 REMARK 465 GLY H 101 REMARK 465 LYS H 102 REMARK 465 ASN H 103 REMARK 465 GLU H 104 REMARK 465 GLU H 105 REMARK 465 GLY H 106 REMARK 465 ALA H 107 REMARK 465 PRO H 108 REMARK 465 GLN H 109 REMARK 465 GLU H 110 REMARK 465 GLY H 111 REMARK 465 ILE H 112 REMARK 465 LEU H 113 REMARK 465 GLU H 114 REMARK 465 ASP H 115 REMARK 465 MET H 116 REMARK 465 PRO H 117 REMARK 465 VAL H 118 REMARK 465 ASP H 119 REMARK 465 PRO H 120 REMARK 465 ASP H 121 REMARK 465 ASN H 122 REMARK 465 GLU H 123 REMARK 465 ALA H 124 REMARK 465 TYR H 125 REMARK 465 GLU H 126 REMARK 465 MET H 127 REMARK 465 PRO H 128 REMARK 465 SER H 129 REMARK 465 GLU H 130 REMARK 465 GLU H 131 REMARK 465 GLY H 132 REMARK 465 TYR H 133 REMARK 465 GLN H 134 REMARK 465 ASP H 135 REMARK 465 TYR H 136 REMARK 465 GLU H 137 REMARK 465 PRO H 138 REMARK 465 GLU H 139 REMARK 465 ALA H 140 REMARK 465 MET P 1 REMARK 465 ASP P 2 REMARK 465 VAL P 3 REMARK 465 PHE P 4 REMARK 465 MET P 5 REMARK 465 LYS P 6 REMARK 465 GLY P 7 REMARK 465 LEU P 8 REMARK 465 SER P 9 REMARK 465 LYS P 10 REMARK 465 ALA P 11 REMARK 465 LYS P 12 REMARK 465 GLU P 13 REMARK 465 GLY P 14 REMARK 465 VAL P 15 REMARK 465 VAL P 16 REMARK 465 ALA P 17 REMARK 465 ALA P 18 REMARK 465 ALA P 19 REMARK 465 GLU P 20 REMARK 465 LYS P 21 REMARK 465 THR P 22 REMARK 465 LYS P 23 REMARK 465 GLN P 24 REMARK 465 GLY P 25 REMARK 465 VAL P 26 REMARK 465 ALA P 27 REMARK 465 GLU P 28 REMARK 465 ALA P 29 REMARK 465 ALA P 30 REMARK 465 GLY P 31 REMARK 465 LYS P 32 REMARK 465 THR P 33 REMARK 465 LYS P 34 REMARK 465 ALA P 90 REMARK 465 ALA P 91 REMARK 465 THR P 92 REMARK 465 GLY P 93 REMARK 465 PHE P 94 REMARK 465 VAL P 95 REMARK 465 LYS P 96 REMARK 465 LYS P 97 REMARK 465 ASP P 98 REMARK 465 GLN P 99 REMARK 465 LEU P 100 REMARK 465 GLY P 101 REMARK 465 LYS P 102 REMARK 465 ASN P 103 REMARK 465 GLU P 104 REMARK 465 GLU P 105 REMARK 465 GLY P 106 REMARK 465 ALA P 107 REMARK 465 PRO P 108 REMARK 465 GLN P 109 REMARK 465 GLU P 110 REMARK 465 GLY P 111 REMARK 465 ILE P 112 REMARK 465 LEU P 113 REMARK 465 GLU P 114 REMARK 465 ASP P 115 REMARK 465 MET P 116 REMARK 465 PRO P 117 REMARK 465 VAL P 118 REMARK 465 ASP P 119 REMARK 465 PRO P 120 REMARK 465 ASP P 121 REMARK 465 ASN P 122 REMARK 465 GLU P 123 REMARK 465 ALA P 124 REMARK 465 TYR P 125 REMARK 465 GLU P 126 REMARK 465 MET P 127 REMARK 465 PRO P 128 REMARK 465 SER P 129 REMARK 465 GLU P 130 REMARK 465 GLU P 131 REMARK 465 GLY P 132 REMARK 465 TYR P 133 REMARK 465 GLN P 134 REMARK 465 ASP P 135 REMARK 465 TYR P 136 REMARK 465 GLU P 137 REMARK 465 PRO P 138 REMARK 465 GLU P 139 REMARK 465 ALA P 140 REMARK 465 MET G 1 REMARK 465 ASP G 2 REMARK 465 VAL G 3 REMARK 465 PHE G 4 REMARK 465 MET G 5 REMARK 465 LYS G 6 REMARK 465 GLY G 7 REMARK 465 LEU G 8 REMARK 465 SER G 9 REMARK 465 LYS G 10 REMARK 465 ALA G 11 REMARK 465 LYS G 12 REMARK 465 GLU G 13 REMARK 465 GLY G 14 REMARK 465 VAL G 15 REMARK 465 VAL G 16 REMARK 465 ALA G 17 REMARK 465 ALA G 18 REMARK 465 ALA G 19 REMARK 465 GLU G 20 REMARK 465 LYS G 21 REMARK 465 THR G 22 REMARK 465 LYS G 23 REMARK 465 GLN G 24 REMARK 465 GLY G 25 REMARK 465 VAL G 26 REMARK 465 ALA G 27 REMARK 465 GLU G 28 REMARK 465 ALA G 29 REMARK 465 ALA G 30 REMARK 465 GLY G 31 REMARK 465 LYS G 32 REMARK 465 THR G 33 REMARK 465 LYS G 34 REMARK 465 ALA G 90 REMARK 465 ALA G 91 REMARK 465 THR G 92 REMARK 465 GLY G 93 REMARK 465 PHE G 94 REMARK 465 VAL G 95 REMARK 465 LYS G 96 REMARK 465 LYS G 97 REMARK 465 ASP G 98 REMARK 465 GLN G 99 REMARK 465 LEU G 100 REMARK 465 GLY G 101 REMARK 465 LYS G 102 REMARK 465 ASN G 103 REMARK 465 GLU G 104 REMARK 465 GLU G 105 REMARK 465 GLY G 106 REMARK 465 ALA G 107 REMARK 465 PRO G 108 REMARK 465 GLN G 109 REMARK 465 GLU G 110 REMARK 465 GLY G 111 REMARK 465 ILE G 112 REMARK 465 LEU G 113 REMARK 465 GLU G 114 REMARK 465 ASP G 115 REMARK 465 MET G 116 REMARK 465 PRO G 117 REMARK 465 VAL G 118 REMARK 465 ASP G 119 REMARK 465 PRO G 120 REMARK 465 ASP G 121 REMARK 465 ASN G 122 REMARK 465 GLU G 123 REMARK 465 ALA G 124 REMARK 465 TYR G 125 REMARK 465 GLU G 126 REMARK 465 MET G 127 REMARK 465 PRO G 128 REMARK 465 SER G 129 REMARK 465 GLU G 130 REMARK 465 GLU G 131 REMARK 465 GLY G 132 REMARK 465 TYR G 133 REMARK 465 GLN G 134 REMARK 465 ASP G 135 REMARK 465 TYR G 136 REMARK 465 GLU G 137 REMARK 465 PRO G 138 REMARK 465 GLU G 139 REMARK 465 ALA G 140 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 PHE B 4 REMARK 465 MET B 5 REMARK 465 LYS B 6 REMARK 465 GLY B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 ALA B 11 REMARK 465 LYS B 12 REMARK 465 GLU B 13 REMARK 465 GLY B 14 REMARK 465 VAL B 15 REMARK 465 VAL B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 THR B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 GLY B 25 REMARK 465 VAL B 26 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 ALA B 29 REMARK 465 ALA B 30 REMARK 465 GLY B 31 REMARK 465 LYS B 32 REMARK 465 THR B 33 REMARK 465 LYS B 34 REMARK 465 ALA B 90 REMARK 465 ALA B 91 REMARK 465 THR B 92 REMARK 465 GLY B 93 REMARK 465 PHE B 94 REMARK 465 VAL B 95 REMARK 465 LYS B 96 REMARK 465 LYS B 97 REMARK 465 ASP B 98 REMARK 465 GLN B 99 REMARK 465 LEU B 100 REMARK 465 GLY B 101 REMARK 465 LYS B 102 REMARK 465 ASN B 103 REMARK 465 GLU B 104 REMARK 465 GLU B 105 REMARK 465 GLY B 106 REMARK 465 ALA B 107 REMARK 465 PRO B 108 REMARK 465 GLN B 109 REMARK 465 GLU B 110 REMARK 465 GLY B 111 REMARK 465 ILE B 112 REMARK 465 LEU B 113 REMARK 465 GLU B 114 REMARK 465 ASP B 115 REMARK 465 MET B 116 REMARK 465 PRO B 117 REMARK 465 VAL B 118 REMARK 465 ASP B 119 REMARK 465 PRO B 120 REMARK 465 ASP B 121 REMARK 465 ASN B 122 REMARK 465 GLU B 123 REMARK 465 ALA B 124 REMARK 465 TYR B 125 REMARK 465 GLU B 126 REMARK 465 MET B 127 REMARK 465 PRO B 128 REMARK 465 SER B 129 REMARK 465 GLU B 130 REMARK 465 GLU B 131 REMARK 465 GLY B 132 REMARK 465 TYR B 133 REMARK 465 GLN B 134 REMARK 465 ASP B 135 REMARK 465 TYR B 136 REMARK 465 GLU B 137 REMARK 465 PRO B 138 REMARK 465 GLU B 139 REMARK 465 ALA B 140 REMARK 465 MET K 1 REMARK 465 ASP K 2 REMARK 465 VAL K 3 REMARK 465 PHE K 4 REMARK 465 MET K 5 REMARK 465 LYS K 6 REMARK 465 GLY K 7 REMARK 465 LEU K 8 REMARK 465 SER K 9 REMARK 465 LYS K 10 REMARK 465 ALA K 11 REMARK 465 LYS K 12 REMARK 465 GLU K 13 REMARK 465 GLY K 14 REMARK 465 VAL K 15 REMARK 465 VAL K 16 REMARK 465 ALA K 17 REMARK 465 ALA K 18 REMARK 465 ALA K 19 REMARK 465 GLU K 20 REMARK 465 LYS K 21 REMARK 465 THR K 22 REMARK 465 LYS K 23 REMARK 465 GLN K 24 REMARK 465 GLY K 25 REMARK 465 VAL K 26 REMARK 465 ALA K 27 REMARK 465 GLU K 28 REMARK 465 ALA K 29 REMARK 465 ALA K 30 REMARK 465 GLY K 31 REMARK 465 LYS K 32 REMARK 465 THR K 33 REMARK 465 LYS K 34 REMARK 465 ALA K 90 REMARK 465 ALA K 91 REMARK 465 THR K 92 REMARK 465 GLY K 93 REMARK 465 PHE K 94 REMARK 465 VAL K 95 REMARK 465 LYS K 96 REMARK 465 LYS K 97 REMARK 465 ASP K 98 REMARK 465 GLN K 99 REMARK 465 LEU K 100 REMARK 465 GLY K 101 REMARK 465 LYS K 102 REMARK 465 ASN K 103 REMARK 465 GLU K 104 REMARK 465 GLU K 105 REMARK 465 GLY K 106 REMARK 465 ALA K 107 REMARK 465 PRO K 108 REMARK 465 GLN K 109 REMARK 465 GLU K 110 REMARK 465 GLY K 111 REMARK 465 ILE K 112 REMARK 465 LEU K 113 REMARK 465 GLU K 114 REMARK 465 ASP K 115 REMARK 465 MET K 116 REMARK 465 PRO K 117 REMARK 465 VAL K 118 REMARK 465 ASP K 119 REMARK 465 PRO K 120 REMARK 465 ASP K 121 REMARK 465 ASN K 122 REMARK 465 GLU K 123 REMARK 465 ALA K 124 REMARK 465 TYR K 125 REMARK 465 GLU K 126 REMARK 465 MET K 127 REMARK 465 PRO K 128 REMARK 465 SER K 129 REMARK 465 GLU K 130 REMARK 465 GLU K 131 REMARK 465 GLY K 132 REMARK 465 TYR K 133 REMARK 465 GLN K 134 REMARK 465 ASP K 135 REMARK 465 TYR K 136 REMARK 465 GLU K 137 REMARK 465 PRO K 138 REMARK 465 GLU K 139 REMARK 465 ALA K 140 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 MET A 5 REMARK 465 LYS A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 THR A 33 REMARK 465 LYS A 34 REMARK 465 ALA A 90 REMARK 465 ALA A 91 REMARK 465 THR A 92 REMARK 465 GLY A 93 REMARK 465 PHE A 94 REMARK 465 VAL A 95 REMARK 465 LYS A 96 REMARK 465 LYS A 97 REMARK 465 ASP A 98 REMARK 465 GLN A 99 REMARK 465 LEU A 100 REMARK 465 GLY A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 GLU A 104 REMARK 465 GLU A 105 REMARK 465 GLY A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 GLN A 109 REMARK 465 GLU A 110 REMARK 465 GLY A 111 REMARK 465 ILE A 112 REMARK 465 LEU A 113 REMARK 465 GLU A 114 REMARK 465 ASP A 115 REMARK 465 MET A 116 REMARK 465 PRO A 117 REMARK 465 VAL A 118 REMARK 465 ASP A 119 REMARK 465 PRO A 120 REMARK 465 ASP A 121 REMARK 465 ASN A 122 REMARK 465 GLU A 123 REMARK 465 ALA A 124 REMARK 465 TYR A 125 REMARK 465 GLU A 126 REMARK 465 MET A 127 REMARK 465 PRO A 128 REMARK 465 SER A 129 REMARK 465 GLU A 130 REMARK 465 GLU A 131 REMARK 465 GLY A 132 REMARK 465 TYR A 133 REMARK 465 GLN A 134 REMARK 465 ASP A 135 REMARK 465 TYR A 136 REMARK 465 GLU A 137 REMARK 465 PRO A 138 REMARK 465 GLU A 139 REMARK 465 ALA A 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 85 76.01 38.11 REMARK 500 ALA P 85 76.00 38.08 REMARK 500 ALA G 85 76.03 38.08 REMARK 500 ALA B 85 75.99 38.12 REMARK 500 ALA K 85 75.98 38.11 REMARK 500 ALA A 85 76.02 38.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36202 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ALPHA-SYNUCLEIN GS87 FIBRIL DBREF 8JEX H 1 140 UNP P37840 SYUA_HUMAN 1 140 DBREF 8JEX J 1 9 PDB 8JEX 8JEX 1 9 DBREF 8JEX P 1 140 UNP P37840 SYUA_HUMAN 1 140 DBREF 8JEX Q 1 9 PDB 8JEX 8JEX 1 9 DBREF 8JEX G 1 140 UNP P37840 SYUA_HUMAN 1 140 DBREF 8JEX I 1 9 PDB 8JEX 8JEX 1 9 DBREF 8JEX B 1 140 UNP P37840 SYUA_HUMAN 1 140 DBREF 8JEX D 1 9 PDB 8JEX 8JEX 1 9 DBREF 8JEX K 1 140 UNP P37840 SYUA_HUMAN 1 140 DBREF 8JEX L 1 9 PDB 8JEX 8JEX 1 9 DBREF 8JEX A 1 140 UNP P37840 SYUA_HUMAN 1 140 DBREF 8JEX C 1 9 PDB 8JEX 8JEX 1 9 SEQRES 1 H 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 H 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 H 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 H 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 H 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 H 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 H 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 H 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 H 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 H 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 H 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA SEQRES 1 J 9 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 P 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 P 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 P 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 P 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 P 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 P 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 P 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 P 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 P 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 P 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 P 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA SEQRES 1 Q 9 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 G 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 G 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 G 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 G 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 G 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 G 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 G 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 G 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 G 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 G 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 G 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA SEQRES 1 I 9 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 B 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 B 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 B 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 B 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 B 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 B 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 B 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 B 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 B 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 B 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 B 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA SEQRES 1 D 9 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 K 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 K 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 K 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 K 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 K 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 K 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 K 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 K 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 K 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 K 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 K 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA SEQRES 1 L 9 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 A 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 A 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 A 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 A 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 A 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 A 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 A 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 A 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 A 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 A 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 A 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA SEQRES 1 C 9 UNK UNK UNK UNK UNK UNK UNK UNK UNK HET NAG H 201 14 HET NAG P 201 14 HET NAG G 201 14 HET NAG B 201 14 HET NAG K 201 14 HET NAG A 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 13 NAG 6(C8 H15 N O6) SHEET 1 AA1 3 VAL H 40 THR H 44 0 SHEET 2 AA1 3 VAL P 40 THR P 44 1 O GLY P 41 N SER H 42 SHEET 3 AA1 3 VAL G 40 THR G 44 1 O GLY G 41 N SER P 42 SHEET 1 AA2 3 HIS H 50 GLY H 51 0 SHEET 2 AA2 3 HIS P 50 GLY P 51 1 O GLY P 51 N HIS H 50 SHEET 3 AA2 3 HIS G 50 GLY G 51 1 O GLY G 51 N HIS P 50 SHEET 1 AA3 3 VAL H 63 VAL H 66 0 SHEET 2 AA3 3 VAL P 63 VAL P 66 1 O VAL P 63 N THR H 64 SHEET 3 AA3 3 VAL G 63 VAL G 66 1 O VAL G 63 N THR P 64 SHEET 1 AA4 3 VAL H 70 THR H 72 0 SHEET 2 AA4 3 VAL P 70 THR P 72 1 O VAL P 71 N THR H 72 SHEET 3 AA4 3 VAL G 70 THR G 72 1 O VAL G 71 N THR P 72 SHEET 1 AA5 3 ALA H 76 GLN H 79 0 SHEET 2 AA5 3 ALA P 76 GLN P 79 1 O GLN P 79 N ALA H 78 SHEET 3 AA5 3 ALA G 76 GLN G 79 1 O GLN G 79 N ALA P 78 SHEET 1 AA6 3 VAL B 40 THR B 44 0 SHEET 2 AA6 3 VAL K 40 THR K 44 1 O GLY K 41 N SER B 42 SHEET 3 AA6 3 VAL A 40 THR A 44 1 O GLY A 41 N SER K 42 SHEET 1 AA7 3 HIS B 50 GLY B 51 0 SHEET 2 AA7 3 HIS K 50 GLY K 51 1 O GLY K 51 N HIS B 50 SHEET 3 AA7 3 HIS A 50 GLY A 51 1 O GLY A 51 N HIS K 50 SHEET 1 AA8 3 VAL B 63 VAL B 66 0 SHEET 2 AA8 3 VAL K 63 VAL K 66 1 O VAL K 63 N THR B 64 SHEET 3 AA8 3 VAL A 63 VAL A 66 1 O VAL A 63 N THR K 64 SHEET 1 AA9 3 VAL B 70 THR B 72 0 SHEET 2 AA9 3 VAL K 70 THR K 72 1 O VAL K 71 N THR B 72 SHEET 3 AA9 3 VAL A 70 THR A 72 1 O VAL A 71 N THR K 72 SHEET 1 AB1 3 ALA B 76 GLN B 79 0 SHEET 2 AB1 3 ALA K 76 GLN K 79 1 O GLN K 79 N ALA B 78 SHEET 3 AB1 3 ALA A 76 GLN A 79 1 O GLN A 79 N ALA K 78 LINK OG SER H 87 C1 NAG H 201 1555 1555 1.46 LINK OG SER P 87 C1 NAG P 201 1555 1555 1.46 LINK OG SER G 87 C1 NAG G 201 1555 1555 1.46 LINK OG SER B 87 C1 NAG B 201 1555 1555 1.46 LINK OG SER K 87 C1 NAG K 201 1555 1555 1.46 LINK OG SER A 87 C1 NAG A 201 1555 1555 1.46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000