HEADER OXIDOREDUCTASE 17-MAY-23 8JFC TITLE V1/S QUADRUPLE MUTANT PLASMODIUM FALCIPARUM DIHYDROFOLATE REDUCTASE- TITLE 2 THYMIDYLATE SYNTHASE (PFDHFR-TS) COMPLEXED WITH COMPOUND 6 (B21591), TITLE 3 NADPH AND DUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: DHFR-TS, V1/S; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DHFR, DIHYDROFOLATE REDUCTASE, PLASMODIUM FALCIPARUM, MALARIA, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.VANICHTANANKUL,T.SAEYANG,D.VITSUPAKORN,S.SAEPUA,C.THONGPANCHANG, AUTHOR 2 Y.YUTHAVONG,S.KAMCHONWONGPAISAN,M.HOARAU REVDAT 2 04-OCT-23 8JFC 1 JRNL REVDAT 1 23-AUG-23 8JFC 0 JRNL AUTH M.HOARAU,P.SERMMAI,T.VARATTHAN,R.THIABMA,T.JANTRA, JRNL AUTH 2 R.RATTANAJAK,D.VITSUPAKORN,J.VANICHTANANKUL,S.SAEPUA, JRNL AUTH 3 Y.YUTHAVONG,C.THONGPANCHANG,S.KAMCHONWONGPAISAN JRNL TITL DISCOVERY OF RIGID BIPHENYL PLASMODIUM FALCIPARUM DHFR JRNL TITL 2 INHIBITORS USING A FRAGMENT LINKING STRATEGY. JRNL REF RSC MED CHEM V. 14 1755 2023 JRNL REFN ESSN 2632-8682 JRNL PMID 37731689 JRNL DOI 10.1039/D3MD00242J REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 65658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 3445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3100 - 6.6800 0.95 2589 148 0.1701 0.2082 REMARK 3 2 6.6800 - 5.3200 1.00 2567 171 0.1809 0.2258 REMARK 3 3 5.3200 - 4.6500 1.00 2568 138 0.1480 0.1987 REMARK 3 4 4.6500 - 4.2300 0.99 2500 157 0.1424 0.1677 REMARK 3 5 4.2300 - 3.9300 0.99 2508 138 0.1575 0.2132 REMARK 3 6 3.9300 - 3.7000 0.99 2482 150 0.1656 0.1925 REMARK 3 7 3.7000 - 3.5100 0.99 2506 135 0.1770 0.2186 REMARK 3 8 3.5100 - 3.3600 1.00 2499 123 0.1887 0.2253 REMARK 3 9 3.3600 - 3.2300 1.00 2537 124 0.1912 0.2511 REMARK 3 10 3.2300 - 3.1200 1.00 2500 121 0.2035 0.2443 REMARK 3 11 3.1200 - 3.0200 1.00 2504 130 0.2081 0.2990 REMARK 3 12 3.0200 - 2.9400 1.00 2494 130 0.2112 0.2684 REMARK 3 13 2.9400 - 2.8600 1.00 2467 144 0.2028 0.2733 REMARK 3 14 2.8600 - 2.7900 1.00 2511 136 0.2101 0.2768 REMARK 3 15 2.7900 - 2.7300 1.00 2459 134 0.2028 0.2941 REMARK 3 16 2.7300 - 2.6700 1.00 2510 143 0.2123 0.2754 REMARK 3 17 2.6700 - 2.6200 1.00 2467 134 0.2151 0.2657 REMARK 3 18 2.6200 - 2.5700 1.00 2485 125 0.2142 0.2795 REMARK 3 19 2.5700 - 2.5200 0.99 2467 130 0.2166 0.2868 REMARK 3 20 2.5200 - 2.4800 0.99 2414 147 0.2143 0.2921 REMARK 3 21 2.4800 - 2.4400 0.99 2483 144 0.2163 0.2662 REMARK 3 22 2.4400 - 2.4000 0.99 2435 144 0.2395 0.2867 REMARK 3 23 2.4000 - 2.3600 0.99 2415 135 0.2414 0.2654 REMARK 3 24 2.3600 - 2.3300 0.97 2424 128 0.2340 0.3013 REMARK 3 25 2.3300 - 2.3000 0.98 2422 136 0.2264 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.272 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 9225 REMARK 3 ANGLE : 0.947 12486 REMARK 3 CHIRALITY : 0.056 1337 REMARK 3 PLANARITY : 0.008 1568 REMARK 3 DIHEDRAL : 15.604 3404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 24.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.520 REMARK 200 R MERGE (I) : 0.08620 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26390 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, AMMONIUM ACETATE, SODIUM REMARK 280 ACETATE, PH 4.6, MICROBATCH, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.48900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.52200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.87850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.52200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.48900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.87850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 23 REMARK 465 ASN A 24 REMARK 465 GLU A 25 REMARK 465 GLY A 26 REMARK 465 LYS A 27 REMARK 465 LYS A 28 REMARK 465 THR A 85 REMARK 465 VAL A 86 REMARK 465 ASP A 87 REMARK 465 ASN A 88 REMARK 465 VAL A 89 REMARK 465 ASN A 90 REMARK 465 ASP A 91 REMARK 465 MET A 92 REMARK 465 PRO A 93 REMARK 465 ASN A 94 REMARK 465 SER A 95 REMARK 465 ASN A 230 REMARK 465 ASN A 231 REMARK 465 LYS A 232 REMARK 465 MET A 233 REMARK 465 LEU A 234 REMARK 465 ASN A 235 REMARK 465 GLU A 236 REMARK 465 GLN A 237 REMARK 465 ASN A 238 REMARK 465 CYS A 239 REMARK 465 ILE A 240 REMARK 465 LYS A 241 REMARK 465 GLY A 242 REMARK 465 GLU A 243 REMARK 465 GLU A 244 REMARK 465 LYS A 245 REMARK 465 ASN A 246 REMARK 465 ASN A 247 REMARK 465 ASP A 248 REMARK 465 MET A 249 REMARK 465 PRO A 250 REMARK 465 LEU A 251 REMARK 465 LYS A 252 REMARK 465 ASN A 253 REMARK 465 ASP A 254 REMARK 465 ASP A 255 REMARK 465 LYS A 256 REMARK 465 ASP A 257 REMARK 465 THR A 258 REMARK 465 CYS A 259 REMARK 465 HIS A 260 REMARK 465 MET A 261 REMARK 465 LYS A 262 REMARK 465 LYS A 263 REMARK 465 LEU A 264 REMARK 465 THR A 265 REMARK 465 GLU A 266 REMARK 465 PHE A 267 REMARK 465 TYR A 268 REMARK 465 LYS A 269 REMARK 465 ASN A 270 REMARK 465 VAL A 271 REMARK 465 ASP A 272 REMARK 465 LYS A 273 REMARK 465 TYR A 274 REMARK 465 LYS A 275 REMARK 465 ILE A 276 REMARK 465 ASN A 277 REMARK 465 TYR A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 ASP A 281 REMARK 465 ASP A 282 REMARK 465 LYS A 297 REMARK 465 GLU A 298 REMARK 465 LYS A 299 REMARK 465 GLU A 300 REMARK 465 GLU A 301 REMARK 465 LYS A 302 REMARK 465 ASN A 303 REMARK 465 ALA A 607 REMARK 465 ALA A 608 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 23 REMARK 465 ASN B 24 REMARK 465 GLU B 25 REMARK 465 GLY B 26 REMARK 465 LYS B 27 REMARK 465 LYS B 28 REMARK 465 ASN B 88 REMARK 465 VAL B 89 REMARK 465 ASN B 90 REMARK 465 ASP B 91 REMARK 465 MET B 92 REMARK 465 PRO B 93 REMARK 465 ASN B 94 REMARK 465 SER B 95 REMARK 465 LYS B 96 REMARK 465 LYS B 97 REMARK 465 ASN B 231 REMARK 465 LYS B 232 REMARK 465 MET B 233 REMARK 465 LEU B 234 REMARK 465 ASN B 235 REMARK 465 GLU B 236 REMARK 465 GLN B 237 REMARK 465 ASN B 238 REMARK 465 CYS B 239 REMARK 465 ILE B 240 REMARK 465 LYS B 241 REMARK 465 GLY B 242 REMARK 465 GLU B 243 REMARK 465 GLU B 244 REMARK 465 LYS B 245 REMARK 465 ASN B 246 REMARK 465 ASN B 247 REMARK 465 ASP B 248 REMARK 465 MET B 249 REMARK 465 PRO B 250 REMARK 465 LEU B 251 REMARK 465 LYS B 252 REMARK 465 ASN B 253 REMARK 465 ASP B 254 REMARK 465 ASP B 255 REMARK 465 LYS B 256 REMARK 465 ASP B 257 REMARK 465 THR B 258 REMARK 465 CYS B 259 REMARK 465 HIS B 260 REMARK 465 MET B 261 REMARK 465 LYS B 262 REMARK 465 LYS B 263 REMARK 465 LEU B 264 REMARK 465 THR B 265 REMARK 465 GLU B 266 REMARK 465 PHE B 267 REMARK 465 TYR B 268 REMARK 465 LYS B 269 REMARK 465 ASN B 270 REMARK 465 VAL B 271 REMARK 465 ASP B 272 REMARK 465 LYS B 273 REMARK 465 TYR B 274 REMARK 465 LYS B 275 REMARK 465 ILE B 276 REMARK 465 ASN B 277 REMARK 465 TYR B 278 REMARK 465 GLU B 279 REMARK 465 ASN B 280 REMARK 465 ASP B 281 REMARK 465 ASP B 282 REMARK 465 LYS B 299 REMARK 465 GLU B 300 REMARK 465 GLU B 301 REMARK 465 LYS B 302 REMARK 465 ALA B 607 REMARK 465 ALA B 608 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 CG SD CE REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 ASN B 303 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 -4.13 -143.60 REMARK 500 ASN A 310 -17.91 -49.94 REMARK 500 HIS A 436 31.90 -143.45 REMARK 500 GLU A 449 122.16 -38.91 REMARK 500 ALA A 541 -78.42 -115.86 REMARK 500 PHE B 312 39.16 -96.25 REMARK 500 HIS B 436 24.73 -141.35 REMARK 500 THR B 442 -64.89 -109.70 REMARK 500 ALA B 541 -79.89 -105.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1156 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1157 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1158 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B1082 DISTANCE = 9.30 ANGSTROMS REMARK 525 HOH B1083 DISTANCE = 9.56 ANGSTROMS REMARK 525 HOH B1084 DISTANCE = 11.27 ANGSTROMS DBREF 8JFC A 1 608 UNP D9N170 D9N170_PLAFA 1 608 DBREF 8JFC B 1 608 UNP D9N170 D9N170_PLAFA 1 608 SEQRES 1 A 608 MET MET GLU GLN VAL CYS ASP VAL PHE ASP ILE TYR ALA SEQRES 2 A 608 ILE CYS ALA CYS CYS LYS VAL GLU SER LYS ASN GLU GLY SEQRES 3 A 608 LYS LYS ASN GLU VAL PHE ASN ASN TYR THR PHE ARG GLY SEQRES 4 A 608 LEU GLY ASN LYS GLY VAL LEU PRO TRP LYS CYS ILE SER SEQRES 5 A 608 LEU ASP MET LYS TYR PHE ARG ALA VAL THR THR TYR VAL SEQRES 6 A 608 ASN GLU SER LYS TYR GLU LYS LEU LYS TYR LYS ARG CYS SEQRES 7 A 608 LYS TYR LEU ASN LYS GLU THR VAL ASP ASN VAL ASN ASP SEQRES 8 A 608 MET PRO ASN SER LYS LYS LEU GLN ASN VAL VAL VAL MET SEQRES 9 A 608 GLY ARG THR ASN TRP GLU SER ILE PRO LYS LYS PHE LYS SEQRES 10 A 608 PRO LEU SER ASN ARG ILE ASN VAL ILE LEU SER ARG THR SEQRES 11 A 608 LEU LYS LYS GLU ASP PHE ASP GLU ASP VAL TYR ILE ILE SEQRES 12 A 608 ASN LYS VAL GLU ASP LEU ILE VAL LEU LEU GLY LYS LEU SEQRES 13 A 608 ASN TYR TYR LYS CYS PHE ILE LEU GLY GLY SER VAL VAL SEQRES 14 A 608 TYR GLN GLU PHE LEU GLU LYS LYS LEU ILE LYS LYS ILE SEQRES 15 A 608 TYR PHE THR ARG ILE ASN SER THR TYR GLU CYS ASP VAL SEQRES 16 A 608 PHE PHE PRO GLU ILE ASN GLU ASN GLU TYR GLN ILE ILE SEQRES 17 A 608 SER VAL SER ASP VAL TYR THR SER ASN ASN THR THR LEU SEQRES 18 A 608 ASP PHE ILE ILE TYR LYS LYS THR ASN ASN LYS MET LEU SEQRES 19 A 608 ASN GLU GLN ASN CYS ILE LYS GLY GLU GLU LYS ASN ASN SEQRES 20 A 608 ASP MET PRO LEU LYS ASN ASP ASP LYS ASP THR CYS HIS SEQRES 21 A 608 MET LYS LYS LEU THR GLU PHE TYR LYS ASN VAL ASP LYS SEQRES 22 A 608 TYR LYS ILE ASN TYR GLU ASN ASP ASP ASP ASP GLU GLU SEQRES 23 A 608 GLU ASP ASP PHE VAL TYR PHE ASN PHE ASN LYS GLU LYS SEQRES 24 A 608 GLU GLU LYS ASN LYS ASN SER ILE HIS PRO ASN ASP PHE SEQRES 25 A 608 GLN ILE TYR ASN SER LEU LYS TYR LYS TYR HIS PRO GLU SEQRES 26 A 608 TYR GLN TYR LEU ASN ILE ILE TYR ASP ILE MET MET ASN SEQRES 27 A 608 GLY ASN LYS GLN SER ASP ARG THR GLY VAL GLY VAL LEU SEQRES 28 A 608 SER LYS PHE GLY TYR ILE MET LYS PHE ASP LEU SER GLN SEQRES 29 A 608 TYR PHE PRO LEU LEU THR THR LYS LYS LEU PHE LEU ARG SEQRES 30 A 608 GLY ILE ILE GLU GLU LEU LEU TRP PHE ILE ARG GLY GLU SEQRES 31 A 608 THR ASN GLY ASN THR LEU LEU ASN LYS ASN VAL ARG ILE SEQRES 32 A 608 TRP GLU ALA ASN GLY THR ARG GLU PHE LEU ASP ASN ARG SEQRES 33 A 608 LYS LEU PHE HIS ARG GLU VAL ASN ASP LEU GLY PRO ILE SEQRES 34 A 608 TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR THR SEQRES 35 A 608 ASN MET TYR ASP ASN TYR GLU ASN LYS GLY VAL ASP GLN SEQRES 36 A 608 LEU LYS ASN ILE ILE ASN LEU ILE LYS ASN ASP PRO THR SEQRES 37 A 608 SER ARG ARG ILE LEU LEU CYS ALA TRP ASN VAL LYS ASP SEQRES 38 A 608 LEU ASP GLN MET ALA LEU PRO PRO CYS HIS ILE LEU CYS SEQRES 39 A 608 GLN PHE TYR VAL PHE ASP GLY LYS LEU SER CYS ILE MET SEQRES 40 A 608 TYR GLN ARG SER CYS ASP LEU GLY LEU GLY VAL PRO PHE SEQRES 41 A 608 ASN ILE ALA SER TYR SER ILE PHE THR HIS MET ILE ALA SEQRES 42 A 608 GLN VAL CYS ASN LEU GLN PRO ALA GLN PHE ILE HIS VAL SEQRES 43 A 608 LEU GLY ASN ALA HIS VAL TYR ASN ASN HIS ILE ASP SER SEQRES 44 A 608 LEU LYS ILE GLN LEU ASN ARG ILE PRO TYR PRO PHE PRO SEQRES 45 A 608 THR LEU LYS LEU ASN PRO ASP ILE LYS ASN ILE GLU ASP SEQRES 46 A 608 PHE THR ILE SER ASP PHE THR ILE GLN ASN TYR VAL HIS SEQRES 47 A 608 HIS GLU LYS ILE SER MET ASP MET ALA ALA SEQRES 1 B 608 MET MET GLU GLN VAL CYS ASP VAL PHE ASP ILE TYR ALA SEQRES 2 B 608 ILE CYS ALA CYS CYS LYS VAL GLU SER LYS ASN GLU GLY SEQRES 3 B 608 LYS LYS ASN GLU VAL PHE ASN ASN TYR THR PHE ARG GLY SEQRES 4 B 608 LEU GLY ASN LYS GLY VAL LEU PRO TRP LYS CYS ILE SER SEQRES 5 B 608 LEU ASP MET LYS TYR PHE ARG ALA VAL THR THR TYR VAL SEQRES 6 B 608 ASN GLU SER LYS TYR GLU LYS LEU LYS TYR LYS ARG CYS SEQRES 7 B 608 LYS TYR LEU ASN LYS GLU THR VAL ASP ASN VAL ASN ASP SEQRES 8 B 608 MET PRO ASN SER LYS LYS LEU GLN ASN VAL VAL VAL MET SEQRES 9 B 608 GLY ARG THR ASN TRP GLU SER ILE PRO LYS LYS PHE LYS SEQRES 10 B 608 PRO LEU SER ASN ARG ILE ASN VAL ILE LEU SER ARG THR SEQRES 11 B 608 LEU LYS LYS GLU ASP PHE ASP GLU ASP VAL TYR ILE ILE SEQRES 12 B 608 ASN LYS VAL GLU ASP LEU ILE VAL LEU LEU GLY LYS LEU SEQRES 13 B 608 ASN TYR TYR LYS CYS PHE ILE LEU GLY GLY SER VAL VAL SEQRES 14 B 608 TYR GLN GLU PHE LEU GLU LYS LYS LEU ILE LYS LYS ILE SEQRES 15 B 608 TYR PHE THR ARG ILE ASN SER THR TYR GLU CYS ASP VAL SEQRES 16 B 608 PHE PHE PRO GLU ILE ASN GLU ASN GLU TYR GLN ILE ILE SEQRES 17 B 608 SER VAL SER ASP VAL TYR THR SER ASN ASN THR THR LEU SEQRES 18 B 608 ASP PHE ILE ILE TYR LYS LYS THR ASN ASN LYS MET LEU SEQRES 19 B 608 ASN GLU GLN ASN CYS ILE LYS GLY GLU GLU LYS ASN ASN SEQRES 20 B 608 ASP MET PRO LEU LYS ASN ASP ASP LYS ASP THR CYS HIS SEQRES 21 B 608 MET LYS LYS LEU THR GLU PHE TYR LYS ASN VAL ASP LYS SEQRES 22 B 608 TYR LYS ILE ASN TYR GLU ASN ASP ASP ASP ASP GLU GLU SEQRES 23 B 608 GLU ASP ASP PHE VAL TYR PHE ASN PHE ASN LYS GLU LYS SEQRES 24 B 608 GLU GLU LYS ASN LYS ASN SER ILE HIS PRO ASN ASP PHE SEQRES 25 B 608 GLN ILE TYR ASN SER LEU LYS TYR LYS TYR HIS PRO GLU SEQRES 26 B 608 TYR GLN TYR LEU ASN ILE ILE TYR ASP ILE MET MET ASN SEQRES 27 B 608 GLY ASN LYS GLN SER ASP ARG THR GLY VAL GLY VAL LEU SEQRES 28 B 608 SER LYS PHE GLY TYR ILE MET LYS PHE ASP LEU SER GLN SEQRES 29 B 608 TYR PHE PRO LEU LEU THR THR LYS LYS LEU PHE LEU ARG SEQRES 30 B 608 GLY ILE ILE GLU GLU LEU LEU TRP PHE ILE ARG GLY GLU SEQRES 31 B 608 THR ASN GLY ASN THR LEU LEU ASN LYS ASN VAL ARG ILE SEQRES 32 B 608 TRP GLU ALA ASN GLY THR ARG GLU PHE LEU ASP ASN ARG SEQRES 33 B 608 LYS LEU PHE HIS ARG GLU VAL ASN ASP LEU GLY PRO ILE SEQRES 34 B 608 TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR THR SEQRES 35 B 608 ASN MET TYR ASP ASN TYR GLU ASN LYS GLY VAL ASP GLN SEQRES 36 B 608 LEU LYS ASN ILE ILE ASN LEU ILE LYS ASN ASP PRO THR SEQRES 37 B 608 SER ARG ARG ILE LEU LEU CYS ALA TRP ASN VAL LYS ASP SEQRES 38 B 608 LEU ASP GLN MET ALA LEU PRO PRO CYS HIS ILE LEU CYS SEQRES 39 B 608 GLN PHE TYR VAL PHE ASP GLY LYS LEU SER CYS ILE MET SEQRES 40 B 608 TYR GLN ARG SER CYS ASP LEU GLY LEU GLY VAL PRO PHE SEQRES 41 B 608 ASN ILE ALA SER TYR SER ILE PHE THR HIS MET ILE ALA SEQRES 42 B 608 GLN VAL CYS ASN LEU GLN PRO ALA GLN PHE ILE HIS VAL SEQRES 43 B 608 LEU GLY ASN ALA HIS VAL TYR ASN ASN HIS ILE ASP SER SEQRES 44 B 608 LEU LYS ILE GLN LEU ASN ARG ILE PRO TYR PRO PHE PRO SEQRES 45 B 608 THR LEU LYS LEU ASN PRO ASP ILE LYS ASN ILE GLU ASP SEQRES 46 B 608 PHE THR ILE SER ASP PHE THR ILE GLN ASN TYR VAL HIS SEQRES 47 B 608 HIS GLU LYS ILE SER MET ASP MET ALA ALA HET NDP A 701 48 HET UMP A 702 20 HET U8I A 703 26 HET GOL A 704 6 HET UMP B 701 20 HET U8I B 702 26 HET GOL B 703 6 HET NDP B 704 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM U8I 4-[3-[[2,4-BIS(AZANYL)-6-ETHYL-PYRIMIDIN-5- HETNAM 2 U8I YL]METHYL]PHENYL]BENZOIC ACID HETNAM GOL GLYCEROL HETSYN UMP DUMP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 UMP 2(C9 H13 N2 O8 P) FORMUL 5 U8I 2(C20 H20 N4 O2) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *642(H2 O) HELIX 1 AA1 GLN A 4 PHE A 9 1 6 HELIX 2 AA2 ASN A 33 PHE A 37 5 5 HELIX 3 AA3 ILE A 51 TYR A 64 1 14 HELIX 4 AA4 ASN A 66 SER A 68 5 3 HELIX 5 AA5 LYS A 69 ASN A 82 1 14 HELIX 6 AA6 ARG A 106 ILE A 112 1 7 HELIX 7 AA7 PRO A 113 LYS A 117 5 5 HELIX 8 AA8 LYS A 132 PHE A 136 5 5 HELIX 9 AA9 LYS A 145 LEU A 156 1 12 HELIX 10 AB1 GLY A 166 LYS A 176 1 11 HELIX 11 AB2 ASP A 284 ASN A 294 1 11 HELIX 12 AB3 HIS A 308 ASP A 311 5 4 HELIX 13 AB4 PHE A 312 LEU A 318 1 7 HELIX 14 AB5 PRO A 324 GLY A 339 1 16 HELIX 15 AB6 LEU A 376 ARG A 388 1 13 HELIX 16 AB7 ASN A 392 ASN A 398 1 7 HELIX 17 AB8 GLU A 405 GLY A 408 5 4 HELIX 18 AB9 THR A 409 ARG A 416 1 8 HELIX 19 AC1 ILE A 429 PHE A 437 1 9 HELIX 20 AC2 ASP A 454 ASP A 466 1 13 HELIX 21 AC3 ASN A 478 MET A 485 5 8 HELIX 22 AC4 LEU A 516 CYS A 536 1 21 HELIX 23 AC5 HIS A 556 ASN A 565 1 10 HELIX 24 AC6 ASN A 582 PHE A 586 5 5 HELIX 25 AC7 THR A 587 SER A 589 5 3 HELIX 26 AC8 VAL B 5 ASP B 10 1 6 HELIX 27 AC9 ASN B 33 PHE B 37 5 5 HELIX 28 AD1 ILE B 51 TYR B 64 1 14 HELIX 29 AD2 ASN B 66 SER B 68 5 3 HELIX 30 AD3 LYS B 69 ASN B 82 1 14 HELIX 31 AD4 ARG B 106 ILE B 112 1 7 HELIX 32 AD5 LYS B 132 PHE B 136 5 5 HELIX 33 AD6 VAL B 146 LYS B 155 1 10 HELIX 34 AD7 GLY B 166 LYS B 176 1 11 HELIX 35 AD8 ASP B 284 ASN B 294 1 11 HELIX 36 AD9 HIS B 308 ASP B 311 5 4 HELIX 37 AE1 PHE B 312 LEU B 318 1 7 HELIX 38 AE2 PRO B 324 GLY B 339 1 16 HELIX 39 AE3 LEU B 376 GLY B 389 1 14 HELIX 40 AE4 ASN B 392 ASN B 398 1 7 HELIX 41 AE5 TRP B 404 GLY B 408 5 5 HELIX 42 AE6 THR B 409 ARG B 416 1 8 HELIX 43 AE7 ILE B 429 PHE B 437 1 9 HELIX 44 AE8 ASP B 454 ASP B 466 1 13 HELIX 45 AE9 ASN B 478 MET B 485 5 8 HELIX 46 AF1 LEU B 516 CYS B 536 1 21 HELIX 47 AF2 HIS B 556 ASN B 565 1 10 HELIX 48 AF3 ASN B 582 PHE B 586 5 5 HELIX 49 AF4 THR B 587 SER B 589 5 3 SHEET 1 AA1 9 TYR A 141 ILE A 143 0 SHEET 2 AA1 9 ILE A 123 LEU A 127 1 N ILE A 126 O TYR A 141 SHEET 3 AA1 9 VAL A 101 GLY A 105 1 N VAL A 102 O ILE A 123 SHEET 4 AA1 9 CYS A 161 ILE A 163 1 O PHE A 162 N VAL A 101 SHEET 5 AA1 9 ILE A 11 VAL A 20 1 N TYR A 12 O CYS A 161 SHEET 6 AA1 9 LYS A 181 TYR A 191 1 O TYR A 183 N ALA A 13 SHEET 7 AA1 9 THR A 219 LYS A 228 -1 O ILE A 224 N PHE A 184 SHEET 8 AA1 9 TYR A 205 SER A 216 -1 N GLN A 206 O LYS A 227 SHEET 9 AA1 9 TYR A 320 LYS A 321 1 O TYR A 320 N VAL A 210 SHEET 1 AA2 2 GLY A 39 GLY A 41 0 SHEET 2 AA2 2 VAL A 195 PHE A 196 -1 O VAL A 195 N LEU A 40 SHEET 1 AA3 6 ASN A 340 GLN A 342 0 SHEET 2 AA3 6 VAL A 350 ASP A 361 -1 O SER A 352 N ASN A 340 SHEET 3 AA3 6 GLN A 539 TYR A 553 -1 O PHE A 543 N PHE A 360 SHEET 4 AA3 6 LYS A 502 ASP A 513 1 N CYS A 505 O ILE A 544 SHEET 5 AA3 6 HIS A 491 PHE A 499 -1 N GLN A 495 O ILE A 506 SHEET 6 AA3 6 LEU A 473 CYS A 475 -1 N LEU A 474 O CYS A 494 SHEET 1 AA4 2 THR A 573 LEU A 576 0 SHEET 2 AA4 2 PHE A 591 GLN A 594 -1 O THR A 592 N LYS A 575 SHEET 1 AA5 8 TYR B 141 ILE B 143 0 SHEET 2 AA5 8 ARG B 122 LEU B 127 1 N ILE B 126 O ILE B 143 SHEET 3 AA5 8 GLN B 99 GLY B 105 1 N ASN B 100 O ILE B 123 SHEET 4 AA5 8 TYR B 158 ILE B 163 1 O PHE B 162 N VAL B 101 SHEET 5 AA5 8 ILE B 11 VAL B 20 1 N TYR B 12 O ILE B 163 SHEET 6 AA5 8 LYS B 181 TYR B 191 1 O TYR B 183 N ALA B 13 SHEET 7 AA5 8 THR B 219 LYS B 228 -1 O TYR B 226 N ILE B 182 SHEET 8 AA5 8 TYR B 214 SER B 216 -1 N SER B 216 O THR B 219 SHEET 1 AA6 9 TYR B 141 ILE B 143 0 SHEET 2 AA6 9 ARG B 122 LEU B 127 1 N ILE B 126 O ILE B 143 SHEET 3 AA6 9 GLN B 99 GLY B 105 1 N ASN B 100 O ILE B 123 SHEET 4 AA6 9 TYR B 158 ILE B 163 1 O PHE B 162 N VAL B 101 SHEET 5 AA6 9 ILE B 11 VAL B 20 1 N TYR B 12 O ILE B 163 SHEET 6 AA6 9 LYS B 181 TYR B 191 1 O TYR B 183 N ALA B 13 SHEET 7 AA6 9 THR B 219 LYS B 228 -1 O TYR B 226 N ILE B 182 SHEET 8 AA6 9 TYR B 205 VAL B 210 -1 N ILE B 208 O ILE B 225 SHEET 9 AA6 9 TYR B 320 LYS B 321 1 O TYR B 320 N VAL B 210 SHEET 1 AA7 2 GLY B 39 GLY B 41 0 SHEET 2 AA7 2 VAL B 195 PHE B 196 -1 O VAL B 195 N LEU B 40 SHEET 1 AA8 6 ASN B 340 GLN B 342 0 SHEET 2 AA8 6 VAL B 350 ASP B 361 -1 O SER B 352 N ASN B 340 SHEET 3 AA8 6 GLN B 539 TYR B 553 -1 O HIS B 545 N MET B 358 SHEET 4 AA8 6 LYS B 502 ASP B 513 1 N LEU B 503 O ALA B 541 SHEET 5 AA8 6 HIS B 491 PHE B 499 -1 N GLN B 495 O ILE B 506 SHEET 6 AA8 6 LEU B 473 CYS B 475 -1 N LEU B 474 O CYS B 494 SHEET 1 AA9 2 THR B 573 LEU B 576 0 SHEET 2 AA9 2 PHE B 591 GLN B 594 -1 O THR B 592 N LYS B 575 CISPEP 1 LYS A 117 PRO A 118 0 -6.12 CISPEP 2 GLY A 165 GLY A 166 0 10.10 CISPEP 3 LYS B 117 PRO B 118 0 -5.09 CISPEP 4 GLY B 165 GLY B 166 0 7.76 CRYST1 56.978 155.757 165.044 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006059 0.00000