HEADER GENE REGULATION 18-MAY-23 8JFF TITLE CRYSTAL STRUCTURE OF CATABOLITE REPRESSOR ACIVATOR FROM E. COLI IN TITLE 2 COMPLEX WITH HEPES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATABOLITE REPRESSOR/ACTIVATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 536; SOURCE 3 ORGANISM_TAXID: 362663; SOURCE 4 GENE: ECP_0082; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CRA, HEPES, DNA BINDING PROTEIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.NEETU,M.KATIKI,P.KUMAR REVDAT 1 24-APR-24 8JFF 0 JRNL AUTH N.NEETU,J.K.MAHTO,M.SHARMA,M.KATIKI,P.DHAKA,P.ROY,S.TOMAR, JRNL AUTH 2 A.NARAYAN,D.YERNOOL,P.KUMAR JRNL TITL SULISOBENZONE IS A POTENT INHIBITOR OF THE GLOBAL JRNL TITL 2 TRANSCRIPTION FACTOR CRA. JRNL REF J.STRUCT.BIOL. V. 215 08034 2023 JRNL REFN ESSN 1095-8657 JRNL PMID 37805153 JRNL DOI 10.1016/J.JSB.2023.108034 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 11741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.534 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.429 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4566 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4364 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6198 ; 0.746 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10012 ; 0.270 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 6.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ; 4.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 776 ;15.352 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.036 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5494 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1110 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2190 ; 1.195 ; 5.508 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2190 ; 1.195 ; 5.508 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2734 ; 2.142 ; 9.905 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2735 ; 2.142 ; 9.905 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2376 ; 0.957 ; 5.733 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2377 ; 0.957 ; 5.733 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3465 ; 1.791 ;10.487 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4975 ; 3.858 ;52.400 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4976 ; 3.858 ;52.400 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1955 14.8808 1.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.1663 REMARK 3 T33: 0.2780 T12: -0.0008 REMARK 3 T13: -0.0262 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.5690 L22: 1.9782 REMARK 3 L33: 2.2364 L12: 0.0935 REMARK 3 L13: 1.1214 L23: -0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.0273 S13: 0.0282 REMARK 3 S21: -0.0461 S22: -0.1337 S23: -0.0888 REMARK 3 S31: 0.0932 S32: -0.0347 S33: 0.0806 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 405 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7283 39.5555 9.2055 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.1096 REMARK 3 T33: 0.4403 T12: -0.0436 REMARK 3 T13: 0.1183 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 0.2985 L22: 2.2762 REMARK 3 L33: 1.3118 L12: -0.1458 REMARK 3 L13: 0.5692 L23: 0.4134 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.1751 S13: -0.0102 REMARK 3 S21: 0.3347 S22: -0.1258 S23: 0.6468 REMARK 3 S31: -0.0090 S32: 0.3211 S33: 0.1559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 108.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, MGCL2, PEG 4000, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.96500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 TYR A 19 REMARK 465 VAL A 20 REMARK 465 ILE A 21 REMARK 465 ASN A 22 REMARK 465 GLY A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 LYS A 26 REMARK 465 GLN A 27 REMARK 465 TYR A 28 REMARK 465 ARG A 29 REMARK 465 VAL A 30 REMARK 465 SER A 31 REMARK 465 ASP A 32 REMARK 465 LYS A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 GLU A 36 REMARK 465 LYS A 37 REMARK 465 VAL A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 VAL A 41 REMARK 465 VAL A 42 REMARK 465 ARG A 43 REMARK 465 GLU A 44 REMARK 465 HIS A 45 REMARK 465 ASN A 46 REMARK 465 TYR A 47 REMARK 465 HIS A 48 REMARK 465 PRO A 49 REMARK 465 ASN A 50 REMARK 465 ALA A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 GLY A 55 REMARK 465 LEU A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 SER A 334 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 GLU B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 VAL B 12 REMARK 465 SER B 13 REMARK 465 ARG B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 TYR B 19 REMARK 465 VAL B 20 REMARK 465 ILE B 21 REMARK 465 ASN B 22 REMARK 465 GLY B 23 REMARK 465 LYS B 24 REMARK 465 ALA B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 27 REMARK 465 TYR B 28 REMARK 465 ARG B 29 REMARK 465 VAL B 30 REMARK 465 SER B 31 REMARK 465 ASP B 32 REMARK 465 LYS B 33 REMARK 465 THR B 34 REMARK 465 VAL B 35 REMARK 465 GLU B 36 REMARK 465 LYS B 37 REMARK 465 VAL B 38 REMARK 465 MET B 39 REMARK 465 ALA B 40 REMARK 465 VAL B 41 REMARK 465 VAL B 42 REMARK 465 ARG B 43 REMARK 465 GLU B 44 REMARK 465 HIS B 45 REMARK 465 ASN B 46 REMARK 465 TYR B 47 REMARK 465 HIS B 48 REMARK 465 PRO B 49 REMARK 465 ASN B 50 REMARK 465 ALA B 51 REMARK 465 VAL B 52 REMARK 465 ALA B 53 REMARK 465 ALA B 54 REMARK 465 GLY B 55 REMARK 465 LEU B 56 REMARK 465 ARG B 57 REMARK 465 ALA B 58 REMARK 465 GLY B 59 REMARK 465 SER B 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 71 32.22 -94.21 REMARK 500 HIS A 131 131.03 -28.64 REMARK 500 ASP A 148 -52.74 74.45 REMARK 500 ALA A 162 62.40 -117.60 REMARK 500 ALA A 179 122.77 179.42 REMARK 500 ARG A 260 -64.70 75.76 REMARK 500 ASP A 267 46.67 -165.48 REMARK 500 ASP A 309 -62.77 -90.77 REMARK 500 ARG A 312 125.82 78.78 REMARK 500 ARG A 328 -169.02 -129.19 REMARK 500 LEU B 71 41.31 -102.11 REMARK 500 ASP B 148 -70.23 68.75 REMARK 500 ASP B 152 121.01 -36.87 REMARK 500 ALA B 162 71.55 -108.55 REMARK 500 LEU B 188 71.78 45.80 REMARK 500 ARG B 260 -73.56 61.69 REMARK 500 LYS B 263 129.55 -175.56 REMARK 500 ASP B 309 -61.74 -97.99 REMARK 500 LYS B 315 119.21 -39.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 259 0.08 SIDE CHAIN REMARK 500 ARG B 260 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 525 DISTANCE = 7.57 ANGSTROMS DBREF1 8JFF A 1 334 UNP A0A454A0X5_ECOL5 DBREF2 8JFF A A0A454A0X5 1 334 DBREF1 8JFF B 1 334 UNP A0A454A0X5_ECOL5 DBREF2 8JFF B A0A454A0X5 1 334 SEQRES 1 A 334 MET LYS LEU ASP GLU ILE ALA ARG LEU ALA GLY VAL SER SEQRES 2 A 334 ARG THR THR ALA SER TYR VAL ILE ASN GLY LYS ALA LYS SEQRES 3 A 334 GLN TYR ARG VAL SER ASP LYS THR VAL GLU LYS VAL MET SEQRES 4 A 334 ALA VAL VAL ARG GLU HIS ASN TYR HIS PRO ASN ALA VAL SEQRES 5 A 334 ALA ALA GLY LEU ARG ALA GLY ARG THR ARG SER ILE GLY SEQRES 6 A 334 LEU VAL ILE PRO ASP LEU GLU ASN THR SER TYR THR ARG SEQRES 7 A 334 ILE ALA ASN TYR LEU GLU ARG GLN ALA ARG GLN ARG GLY SEQRES 8 A 334 TYR GLN LEU LEU ILE ALA CYS SER GLU ASP GLN PRO ASP SEQRES 9 A 334 ASN GLU MET ARG CYS ILE GLU HIS LEU LEU GLN ARG GLN SEQRES 10 A 334 VAL ASP ALA ILE ILE VAL SER THR SER LEU PRO PRO GLU SEQRES 11 A 334 HIS PRO PHE TYR GLN ARG TRP ALA ASN ASP PRO PHE PRO SEQRES 12 A 334 ILE VAL ALA LEU ASP ARG ALA LEU ASP ARG GLU HIS PHE SEQRES 13 A 334 THR SER VAL VAL GLY ALA ASP GLN ASP ASP ALA GLU MET SEQRES 14 A 334 LEU ALA GLU GLU LEU ARG LYS PHE PRO ALA GLU THR VAL SEQRES 15 A 334 LEU TYR LEU GLY ALA LEU PRO GLU LEU SER VAL SER PHE SEQRES 16 A 334 LEU ARG GLU GLN GLY PHE ARG THR ALA TRP LYS ASP ASP SEQRES 17 A 334 PRO ARG GLU VAL HIS PHE LEU TYR ALA ASN SER TYR GLU SEQRES 18 A 334 ARG GLU ALA ALA ALA GLN LEU PHE GLU LYS TRP LEU GLU SEQRES 19 A 334 THR HIS PRO MET PRO GLN ALA LEU PHE THR THR SER PHE SEQRES 20 A 334 ALA LEU LEU GLN GLY VAL MET ASP VAL THR LEU ARG ARG SEQRES 21 A 334 ASP GLY LYS LEU PRO SER ASP LEU ALA ILE ALA THR PHE SEQRES 22 A 334 GLY ASP ASN GLU LEU LEU ASP PHE LEU GLN CYS PRO VAL SEQRES 23 A 334 LEU ALA VAL ALA GLN ARG HIS ARG ASP VAL ALA GLU ARG SEQRES 24 A 334 VAL LEU GLU ILE VAL LEU ALA SER LEU ASP GLU PRO ARG SEQRES 25 A 334 LYS PRO LYS PRO GLY LEU THR ARG ILE LYS ARG ASN LEU SEQRES 26 A 334 TYR ARG ARG GLY VAL LEU SER ARG SER SEQRES 1 B 334 MET LYS LEU ASP GLU ILE ALA ARG LEU ALA GLY VAL SER SEQRES 2 B 334 ARG THR THR ALA SER TYR VAL ILE ASN GLY LYS ALA LYS SEQRES 3 B 334 GLN TYR ARG VAL SER ASP LYS THR VAL GLU LYS VAL MET SEQRES 4 B 334 ALA VAL VAL ARG GLU HIS ASN TYR HIS PRO ASN ALA VAL SEQRES 5 B 334 ALA ALA GLY LEU ARG ALA GLY ARG THR ARG SER ILE GLY SEQRES 6 B 334 LEU VAL ILE PRO ASP LEU GLU ASN THR SER TYR THR ARG SEQRES 7 B 334 ILE ALA ASN TYR LEU GLU ARG GLN ALA ARG GLN ARG GLY SEQRES 8 B 334 TYR GLN LEU LEU ILE ALA CYS SER GLU ASP GLN PRO ASP SEQRES 9 B 334 ASN GLU MET ARG CYS ILE GLU HIS LEU LEU GLN ARG GLN SEQRES 10 B 334 VAL ASP ALA ILE ILE VAL SER THR SER LEU PRO PRO GLU SEQRES 11 B 334 HIS PRO PHE TYR GLN ARG TRP ALA ASN ASP PRO PHE PRO SEQRES 12 B 334 ILE VAL ALA LEU ASP ARG ALA LEU ASP ARG GLU HIS PHE SEQRES 13 B 334 THR SER VAL VAL GLY ALA ASP GLN ASP ASP ALA GLU MET SEQRES 14 B 334 LEU ALA GLU GLU LEU ARG LYS PHE PRO ALA GLU THR VAL SEQRES 15 B 334 LEU TYR LEU GLY ALA LEU PRO GLU LEU SER VAL SER PHE SEQRES 16 B 334 LEU ARG GLU GLN GLY PHE ARG THR ALA TRP LYS ASP ASP SEQRES 17 B 334 PRO ARG GLU VAL HIS PHE LEU TYR ALA ASN SER TYR GLU SEQRES 18 B 334 ARG GLU ALA ALA ALA GLN LEU PHE GLU LYS TRP LEU GLU SEQRES 19 B 334 THR HIS PRO MET PRO GLN ALA LEU PHE THR THR SER PHE SEQRES 20 B 334 ALA LEU LEU GLN GLY VAL MET ASP VAL THR LEU ARG ARG SEQRES 21 B 334 ASP GLY LYS LEU PRO SER ASP LEU ALA ILE ALA THR PHE SEQRES 22 B 334 GLY ASP ASN GLU LEU LEU ASP PHE LEU GLN CYS PRO VAL SEQRES 23 B 334 LEU ALA VAL ALA GLN ARG HIS ARG ASP VAL ALA GLU ARG SEQRES 24 B 334 VAL LEU GLU ILE VAL LEU ALA SER LEU ASP GLU PRO ARG SEQRES 25 B 334 LYS PRO LYS PRO GLY LEU THR ARG ILE LYS ARG ASN LEU SEQRES 26 B 334 TYR ARG ARG GLY VAL LEU SER ARG SER HET EPE A 401 15 HET EPE A 402 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 5 HOH *41(H2 O) HELIX 1 AA1 ASN A 73 GLN A 89 1 17 HELIX 2 AA2 GLN A 102 ARG A 116 1 15 HELIX 3 AA3 PHE A 133 ALA A 138 5 6 HELIX 4 AA4 ALA A 162 LYS A 176 1 15 HELIX 5 AA5 LEU A 191 TRP A 205 1 15 HELIX 6 AA6 GLU A 221 HIS A 236 1 16 HELIX 7 AA7 SER A 246 ARG A 259 1 14 HELIX 8 AA8 ASN A 276 LEU A 282 5 7 HELIX 9 AA9 ARG A 292 GLU A 310 1 19 HELIX 10 AB1 LEU A 331 ARG A 333 5 3 HELIX 11 AB2 ASN B 73 GLY B 91 1 19 HELIX 12 AB3 GLN B 102 ARG B 116 1 15 HELIX 13 AB4 PHE B 133 ALA B 138 5 6 HELIX 14 AB5 ALA B 162 ARG B 175 1 14 HELIX 15 AB6 LEU B 191 TRP B 205 1 15 HELIX 16 AB7 GLU B 221 LEU B 233 1 13 HELIX 17 AB8 SER B 246 GLY B 262 1 17 HELIX 18 AB9 ASN B 276 LEU B 282 5 7 HELIX 19 AC1 ARG B 292 GLU B 310 1 19 SHEET 1 AA1 6 GLN A 93 ILE A 96 0 SHEET 2 AA1 6 SER A 63 VAL A 67 1 N LEU A 66 O LEU A 95 SHEET 3 AA1 6 ALA A 120 VAL A 123 1 O ALA A 120 N GLY A 65 SHEET 4 AA1 6 ILE A 144 LEU A 147 1 O LEU A 147 N VAL A 123 SHEET 5 AA1 6 THR A 157 GLY A 161 1 O VAL A 159 N ALA A 146 SHEET 6 AA1 6 GLY A 317 ILE A 321 1 O THR A 319 N SER A 158 SHEET 1 AA2 6 VAL A 212 ALA A 217 0 SHEET 2 AA2 6 VAL A 182 ALA A 187 1 N TYR A 184 O HIS A 213 SHEET 3 AA2 6 ALA A 241 THR A 244 1 O PHE A 243 N LEU A 185 SHEET 4 AA2 6 ALA A 269 PHE A 273 1 O ALA A 271 N THR A 244 SHEET 5 AA2 6 PRO A 285 ALA A 290 1 O LEU A 287 N ILE A 270 SHEET 6 AA2 6 ASN A 324 GLY A 329 -1 O ASN A 324 N ALA A 290 SHEET 1 AA3 6 GLN B 93 CYS B 98 0 SHEET 2 AA3 6 SER B 63 ILE B 68 1 N LEU B 66 O LEU B 95 SHEET 3 AA3 6 ALA B 120 VAL B 123 1 O ILE B 122 N GLY B 65 SHEET 4 AA3 6 ILE B 144 LEU B 147 1 O LEU B 147 N VAL B 123 SHEET 5 AA3 6 THR B 157 GLY B 161 1 O VAL B 159 N ALA B 146 SHEET 6 AA3 6 GLY B 317 ILE B 321 1 O GLY B 317 N SER B 158 SHEET 1 AA4 6 VAL B 212 ALA B 217 0 SHEET 2 AA4 6 VAL B 182 ALA B 187 1 N TYR B 184 O LEU B 215 SHEET 3 AA4 6 ALA B 241 THR B 244 1 O PHE B 243 N LEU B 185 SHEET 4 AA4 6 ALA B 269 PHE B 273 1 O ALA B 271 N THR B 244 SHEET 5 AA4 6 PRO B 285 ALA B 290 1 O LEU B 287 N ILE B 270 SHEET 6 AA4 6 ASN B 324 GLY B 329 -1 O TYR B 326 N ALA B 288 CRYST1 43.330 108.900 123.930 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008069 0.00000