HEADER GENE REGULATION/DNA 23-MAY-23 8JHF TITLE NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE KMT5B; COMPND 3 CHAIN: K; COMPND 4 SYNONYM: LYSINE N-METHYLTRANSFERASE 5B,LYSINE-SPECIFIC COMPND 5 METHYLTRANSFERASE 5B,SUPPRESSOR OF VARIEGATION 4-20 HOMOLOG 1, COMPND 6 SU(VAR)4-20 HOMOLOG 1,SUV4-20H1,[HISTONE H4]-N-METHYL-L-LYSINE20 N- COMPND 7 METHYLTRANSFERASE KMT5B,[HISTONE H4]-LYSINE20 N-METHYLTRANSFERASE COMPND 8 KMT5B; COMPND 9 EC: 2.1.1.362,2.1.1.361; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: HISTONE H3.1; COMPND 13 CHAIN: A, E; COMPND 14 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 15 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 16 H3/L; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: HISTONE H4; COMPND 20 CHAIN: B, F; COMPND 21 ENGINEERED: YES; COMPND 22 MUTATION: YES; COMPND 23 MOL_ID: 4; COMPND 24 MOLECULE: HISTONE H2A.Z; COMPND 25 CHAIN: C, G; COMPND 26 SYNONYM: H2A/Z; COMPND 27 ENGINEERED: YES; COMPND 28 MOL_ID: 5; COMPND 29 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 30 CHAIN: D, H; COMPND 31 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 32 ENGINEERED: YES; COMPND 33 MOL_ID: 6; COMPND 34 MOLECULE: DNA (160-MER); COMPND 35 CHAIN: I; COMPND 36 ENGINEERED: YES; COMPND 37 MOL_ID: 7; COMPND 38 MOLECULE: DNA (160-MER); COMPND 39 CHAIN: J; COMPND 40 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMT5B, SUV420H1, CGI-85; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC SOURCE 13 HIST1H3C, H3C4, H3FB, HIST1H3D, H3C6, H3FD, HIST1H3E, H3C7, H3FI, SOURCE 14 HIST1H3F, H3C8, H3FH, HIST1H3G, H3C10, H3FK, HIST1H3H, H3C11, H3FF, SOURCE 15 HIST1H3I, H3C12, H3FJ, HIST1H3J; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, SOURCE 23 H4/G, H4FG, HIST1H4C, H4C4, H4/B, H4FB, HIST1H4D, H4C5, H4/J, H4FJ, SOURCE 24 HIST1H4E, H4C6, H4/C, H4FC, HIST1H4F, H4C8, H4/H, H4FH, HIST1H4H, SOURCE 25 H4C9, H4/M, H4FM, HIST1H4I, H4C11, H4/E, H4FE, HIST1H4J, H4C12, SOURCE 26 H4/D, H4FD, HIST1H4K, H4C13, H4/K, H4FK, HIST1H4L, H4C14, H4/N, SOURCE 27 H4F2, H4FN, HIST2H4, HIST2H4A, H4C15, H4/O, H4FO, HIST2H4B, H4C16, SOURCE 28 H4-16, HIST4H4; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 32 MOL_ID: 4; SOURCE 33 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 34 ORGANISM_COMMON: HUMAN; SOURCE 35 ORGANISM_TAXID: 9606; SOURCE 36 GENE: H2AZ1, H2AFZ, H2AZ; SOURCE 37 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 38 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 39 MOL_ID: 5; SOURCE 40 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 41 ORGANISM_COMMON: HUMAN; SOURCE 42 ORGANISM_TAXID: 9606; SOURCE 43 GENE: H2BC12, H2BFT, HIRIP1, HIST1H2BK; SOURCE 44 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 45 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 46 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 47 MOL_ID: 6; SOURCE 48 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 49 ORGANISM_COMMON: HUMAN; SOURCE 50 ORGANISM_TAXID: 9606; SOURCE 51 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 52 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 53 MOL_ID: 7; SOURCE 54 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 55 ORGANISM_COMMON: HUMAN; SOURCE 56 ORGANISM_TAXID: 9606; SOURCE 57 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 58 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSOME COMPLEX, HISTONE METHYLTRANSFERASE, GENE REGULATION/DNA, KEYWDS 2 GENE REGULATION-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR F.LIN,W.LI REVDAT 2 20-DEC-23 8JHF 1 JRNL REVDAT 1 15-NOV-23 8JHF 0 JRNL AUTH F.LIN,R.ZHANG,W.SHAO,C.LEI,M.MA,Y.ZHANG,Z.WEN,W.LI JRNL TITL STRUCTURAL BASIS OF NUCLEOSOMAL H4K20 RECOGNITION AND JRNL TITL 2 METHYLATION BY SUV420H1 METHYLTRANSFERASE. JRNL REF CELL DISCOV V. 9 120 2023 JRNL REFN ESSN 2056-5968 JRNL PMID 38052811 JRNL DOI 10.1038/S41421-023-00620-5 REMARK 2 REMARK 2 RESOLUTION. 3.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.680 REMARK 3 NUMBER OF PARTICLES : 45377 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8JHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 29-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037722. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF THE NATIVE REMARK 245 SUV420H1 BOUND TO 167-BP REMARK 245 NUCLEOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.30 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOTTED FOR 3 S BEFORE BEING REMARK 245 PLUNGED INTO LIQUID ETHANE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: UNDECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, A, B, C, D, E, F, G, H, I, REMARK 350 AND CHAINS: J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET K 1 REMARK 465 LYS K 2 REMARK 465 TRP K 3 REMARK 465 LEU K 4 REMARK 465 GLY K 5 REMARK 465 GLU K 6 REMARK 465 SER K 7 REMARK 465 LYS K 8 REMARK 465 ASN K 9 REMARK 465 MET K 10 REMARK 465 VAL K 11 REMARK 465 VAL K 12 REMARK 465 ASN K 13 REMARK 465 GLY K 14 REMARK 465 ARG K 15 REMARK 465 ARG K 16 REMARK 465 ASN K 17 REMARK 465 GLY K 18 REMARK 465 GLY K 19 REMARK 465 LYS K 20 REMARK 465 LEU K 21 REMARK 465 SER K 22 REMARK 465 ASN K 23 REMARK 465 ASP K 24 REMARK 465 HIS K 25 REMARK 465 GLN K 26 REMARK 465 GLN K 27 REMARK 465 ASN K 28 REMARK 465 GLN K 29 REMARK 465 SER K 30 REMARK 465 LYS K 31 REMARK 465 LEU K 32 REMARK 465 GLN K 33 REMARK 465 HIS K 34 REMARK 465 THR K 35 REMARK 465 GLY K 36 REMARK 465 LYS K 37 REMARK 465 ASP K 38 REMARK 465 THR K 39 REMARK 465 LEU K 40 REMARK 465 LYS K 41 REMARK 465 ALA K 42 REMARK 465 GLY K 43 REMARK 465 LYS K 44 REMARK 465 ASN K 45 REMARK 465 ALA K 46 REMARK 465 VAL K 47 REMARK 465 GLU K 48 REMARK 465 ARG K 49 REMARK 465 ARG K 50 REMARK 465 SER K 51 REMARK 465 ASN K 52 REMARK 465 ARG K 53 REMARK 465 CYS K 54 REMARK 465 ASN K 55 REMARK 465 GLY K 56 REMARK 465 ASN K 57 REMARK 465 SER K 58 REMARK 465 GLY K 59 REMARK 465 PHE K 60 REMARK 465 GLU K 61 REMARK 465 GLY K 62 REMARK 465 GLN K 63 REMARK 465 SER K 64 REMARK 465 ARG K 65 REMARK 465 TYR K 66 REMARK 465 VAL K 67 REMARK 465 PRO K 68 REMARK 465 SER K 103 REMARK 465 ALA K 104 REMARK 465 PHE K 105 REMARK 465 PRO K 106 REMARK 465 SER K 107 REMARK 465 ARG K 108 REMARK 465 SER K 109 REMARK 465 SER K 110 REMARK 465 ARG K 111 REMARK 465 HIS K 112 REMARK 465 PHE K 113 REMARK 465 SER K 114 REMARK 465 LYS K 115 REMARK 465 SER K 116 REMARK 465 ASP K 117 REMARK 465 SER K 118 REMARK 465 PHE K 119 REMARK 465 SER K 120 REMARK 465 HIS K 121 REMARK 465 ASN K 122 REMARK 465 ASN K 123 REMARK 465 PRO K 124 REMARK 465 VAL K 125 REMARK 465 ARG K 126 REMARK 465 PHE K 127 REMARK 465 ARG K 128 REMARK 465 PRO K 129 REMARK 465 ILE K 130 REMARK 465 LYS K 131 REMARK 465 GLY K 132 REMARK 465 ARG K 133 REMARK 465 ARG K 335 REMARK 465 VAL K 336 REMARK 465 GLY K 337 REMARK 465 LEU K 338 REMARK 465 PRO K 339 REMARK 465 ALA K 340 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 HIS A 39 REMARK 465 ARG A 40 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 LYS C 125 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ALA E 135 REMARK 465 LYS G 13 REMARK 465 THR G 14 REMARK 465 LYS G 15 REMARK 465 LYS G 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU K 135 CG CD OE1 OE2 REMARK 470 GLU K 139 CG CD OE1 OE2 REMARK 470 GLU K 142 CG CD OE1 OE2 REMARK 470 LYS K 146 CG CD CE NZ REMARK 470 GLU K 148 CG CD OE1 OE2 REMARK 470 LYS K 152 CG CD CE NZ REMARK 470 TRP K 162 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP K 162 CZ3 CH2 REMARK 470 ARG K 164 CG CD NE CZ NH1 NH2 REMARK 470 HIS K 165 CG ND1 CD2 CE1 NE2 REMARK 470 LEU K 168 CG CD1 CD2 REMARK 470 ARG K 276 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 61 CG CD1 CD2 REMARK 470 GLU H 73 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS K 321 SG CYS K 324 2.06 REMARK 500 O THR K 284 OG1 THR K 288 2.11 REMARK 500 O MET K 188 OG SER K 193 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER K 73 -4.67 68.36 REMARK 500 ALA K 74 -130.03 45.82 REMARK 500 LYS K 172 -8.10 75.39 REMARK 500 GLN K 174 -10.70 73.55 REMARK 500 CYS K 200 122.40 -39.40 REMARK 500 GLU K 217 56.40 39.82 REMARK 500 LYS K 219 -156.47 -102.11 REMARK 500 ASP K 222 -167.19 -173.74 REMARK 500 THR K 256 -2.37 70.03 REMARK 500 ALA K 293 179.07 69.85 REMARK 500 GLU K 320 54.27 -92.93 REMARK 500 ASN K 346 58.99 -92.15 REMARK 500 ARG K 352 -7.98 71.23 REMARK 500 ASP A 77 -166.29 -79.64 REMARK 500 PHE A 78 -95.25 58.55 REMARK 500 ARG A 131 3.53 -67.18 REMARK 500 SER B 47 -167.13 -79.32 REMARK 500 PHE B 100 55.27 -93.61 REMARK 500 THR C 40 -177.94 -68.46 REMARK 500 THR C 41 -167.82 -77.89 REMARK 500 ALA C 72 16.55 56.84 REMARK 500 ASP D 48 43.64 39.55 REMARK 500 SER D 52 -168.18 -79.70 REMARK 500 SER G 42 -99.20 49.74 REMARK 500 HIS G 43 32.04 -98.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS K 319 SG REMARK 620 2 CYS K 321 SG 88.2 REMARK 620 3 CYS K 324 SG 100.2 53.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36264 RELATED DB: EMDB REMARK 900 NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME DBREF 8JHF K 1 361 UNP Q4FZB7 KMT5B_HUMAN 1 361 DBREF 8JHF A 0 135 UNP P68431 H31_HUMAN 1 136 DBREF 8JHF B 17 102 UNP P62805 H4_HUMAN 18 103 DBREF 8JHF C 13 125 UNP P0C0S5 H2AZ_HUMAN 14 126 DBREF 8JHF D 28 122 UNP O60814 H2B1K_HUMAN 32 126 DBREF 8JHF E 0 135 UNP P68431 H31_HUMAN 1 136 DBREF 8JHF F 17 102 UNP P62805 H4_HUMAN 18 103 DBREF 8JHF G 13 125 UNP P0C0S5 H2AZ_HUMAN 14 126 DBREF 8JHF H 28 122 UNP O60814 H2B1K_HUMAN 32 126 DBREF 8JHF I 1 160 PDB 8JHF 8JHF 1 160 DBREF 8JHF J 8 167 PDB 8JHF 8JHF 8 167 SEQADV 8JHF MET B 20 UNP P62805 LYS 21 ENGINEERED MUTATION SEQADV 8JHF MET F 20 UNP P62805 LYS 21 ENGINEERED MUTATION SEQRES 1 K 361 MET LYS TRP LEU GLY GLU SER LYS ASN MET VAL VAL ASN SEQRES 2 K 361 GLY ARG ARG ASN GLY GLY LYS LEU SER ASN ASP HIS GLN SEQRES 3 K 361 GLN ASN GLN SER LYS LEU GLN HIS THR GLY LYS ASP THR SEQRES 4 K 361 LEU LYS ALA GLY LYS ASN ALA VAL GLU ARG ARG SER ASN SEQRES 5 K 361 ARG CYS ASN GLY ASN SER GLY PHE GLU GLY GLN SER ARG SEQRES 6 K 361 TYR VAL PRO SER SER GLY MET SER ALA LYS GLU LEU CYS SEQRES 7 K 361 GLU ASN ASP ASP LEU ALA THR SER LEU VAL LEU ASP PRO SEQRES 8 K 361 TYR LEU GLY PHE GLN THR HIS LYS MET ASN THR SER ALA SEQRES 9 K 361 PHE PRO SER ARG SER SER ARG HIS PHE SER LYS SER ASP SEQRES 10 K 361 SER PHE SER HIS ASN ASN PRO VAL ARG PHE ARG PRO ILE SEQRES 11 K 361 LYS GLY ARG GLN GLU GLU LEU LYS GLU VAL ILE GLU ARG SEQRES 12 K 361 PHE LYS LYS ASP GLU HIS LEU GLU LYS ALA PHE LYS CYS SEQRES 13 K 361 LEU THR SER GLY GLU TRP ALA ARG HIS TYR PHE LEU ASN SEQRES 14 K 361 LYS ASN LYS MET GLN GLU LYS LEU PHE LYS GLU HIS VAL SEQRES 15 K 361 PHE ILE TYR LEU ARG MET PHE ALA THR ASP SER GLY PHE SEQRES 16 K 361 GLU ILE LEU PRO CYS ASN ARG TYR SER SER GLU GLN ASN SEQRES 17 K 361 GLY ALA LYS ILE VAL ALA THR LYS GLU TRP LYS ARG ASN SEQRES 18 K 361 ASP LYS ILE GLU LEU LEU VAL GLY CYS ILE ALA GLU LEU SEQRES 19 K 361 SER GLU ILE GLU GLU ASN MET LEU LEU ARG HIS GLY GLU SEQRES 20 K 361 ASN ASP PHE SER VAL MET TYR SER THR ARG LYS ASN CYS SEQRES 21 K 361 ALA GLN LEU TRP LEU GLY PRO ALA ALA PHE ILE ASN HIS SEQRES 22 K 361 ASP CYS ARG PRO ASN CYS LYS PHE VAL SER THR GLY ARG SEQRES 23 K 361 ASP THR ALA CYS VAL LYS ALA LEU ARG ASP ILE GLU PRO SEQRES 24 K 361 GLY GLU GLU ILE SER CYS TYR TYR GLY ASP GLY PHE PHE SEQRES 25 K 361 GLY GLU ASN ASN GLU PHE CYS GLU CYS TYR THR CYS GLU SEQRES 26 K 361 ARG ARG GLY THR GLY ALA PHE LYS SER ARG VAL GLY LEU SEQRES 27 K 361 PRO ALA PRO ALA PRO VAL ILE ASN SER LYS TYR GLY LEU SEQRES 28 K 361 ARG GLU THR ASP LYS ARG LEU ASN ARG LEU SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 86 ARG HIS ARG MET VAL LEU ARG ASP ASN ILE GLN GLY ILE SEQRES 2 B 86 THR LYS PRO ALA ILE ARG ARG LEU ALA ARG ARG GLY GLY SEQRES 3 B 86 VAL LYS ARG ILE SER GLY LEU ILE TYR GLU GLU THR ARG SEQRES 4 B 86 GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL ILE ARG ASP SEQRES 5 B 86 ALA VAL THR TYR THR GLU HIS ALA LYS ARG LYS THR VAL SEQRES 6 B 86 THR ALA MET ASP VAL VAL TYR ALA LEU LYS ARG GLN GLY SEQRES 7 B 86 ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 113 LYS THR LYS ALA VAL SER ARG SER GLN ARG ALA GLY LEU SEQRES 2 C 113 GLN PHE PRO VAL GLY ARG ILE HIS ARG HIS LEU LYS SER SEQRES 3 C 113 ARG THR THR SER HIS GLY ARG VAL GLY ALA THR ALA ALA SEQRES 4 C 113 VAL TYR SER ALA ALA ILE LEU GLU TYR LEU THR ALA GLU SEQRES 5 C 113 VAL LEU GLU LEU ALA GLY ASN ALA SER LYS ASP LEU LYS SEQRES 6 C 113 VAL LYS ARG ILE THR PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 C 113 ARG GLY ASP GLU GLU LEU ASP SER LEU ILE LYS ALA THR SEQRES 8 C 113 ILE ALA GLY GLY GLY VAL ILE PRO HIS ILE HIS LYS SER SEQRES 9 C 113 LEU ILE GLY LYS LYS GLY GLN GLN LYS SEQRES 1 D 95 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 D 95 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 D 95 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 D 95 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 D 95 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 D 95 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 D 95 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 D 95 THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 86 ARG HIS ARG MET VAL LEU ARG ASP ASN ILE GLN GLY ILE SEQRES 2 F 86 THR LYS PRO ALA ILE ARG ARG LEU ALA ARG ARG GLY GLY SEQRES 3 F 86 VAL LYS ARG ILE SER GLY LEU ILE TYR GLU GLU THR ARG SEQRES 4 F 86 GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL ILE ARG ASP SEQRES 5 F 86 ALA VAL THR TYR THR GLU HIS ALA LYS ARG LYS THR VAL SEQRES 6 F 86 THR ALA MET ASP VAL VAL TYR ALA LEU LYS ARG GLN GLY SEQRES 7 F 86 ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 113 LYS THR LYS ALA VAL SER ARG SER GLN ARG ALA GLY LEU SEQRES 2 G 113 GLN PHE PRO VAL GLY ARG ILE HIS ARG HIS LEU LYS SER SEQRES 3 G 113 ARG THR THR SER HIS GLY ARG VAL GLY ALA THR ALA ALA SEQRES 4 G 113 VAL TYR SER ALA ALA ILE LEU GLU TYR LEU THR ALA GLU SEQRES 5 G 113 VAL LEU GLU LEU ALA GLY ASN ALA SER LYS ASP LEU LYS SEQRES 6 G 113 VAL LYS ARG ILE THR PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 G 113 ARG GLY ASP GLU GLU LEU ASP SER LEU ILE LYS ALA THR SEQRES 8 G 113 ILE ALA GLY GLY GLY VAL ILE PRO HIS ILE HIS LYS SER SEQRES 9 G 113 LEU ILE GLY LYS LYS GLY GLN GLN LYS SEQRES 1 H 95 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 H 95 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 H 95 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 H 95 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 H 95 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 H 95 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 H 95 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 H 95 THR SER ALA LYS SEQRES 1 I 160 DA DT DC DC DG DA DT DC DC DC DC DT DG SEQRES 2 I 160 DG DA DG DA DA DT DC DC DC DG DG DT DG SEQRES 3 I 160 DC DC DG DA DG DG DC DC DG DC DT DC DA SEQRES 4 I 160 DA DT DT DG DG DT DC DG DT DA DG DA DC SEQRES 5 I 160 DA DG DC DT DC DT DA DG DC DA DC DC DG SEQRES 6 I 160 DC DT DT DA DA DA DC DG DC DA DC DG DT SEQRES 7 I 160 DA DC DG DC DG DC DT DG DT DC DC DC DC SEQRES 8 I 160 DC DG DC DG DT DT DT DT DA DA DC DC DG SEQRES 9 I 160 DC DC DA DA DG DG DG DG DA DT DT DA DC SEQRES 10 I 160 DT DC DC DC DT DA DG DT DC DT DC DC DA SEQRES 11 I 160 DG DG DC DA DC DG DT DG DT DC DA DG DA SEQRES 12 I 160 DT DA DT DA DT DA DC DA DT DC DC DT DG SEQRES 13 I 160 DT DT DC DC SEQRES 1 J 160 DG DG DA DA DC DA DG DG DA DT DG DT DA SEQRES 2 J 160 DT DA DT DA DT DC DT DG DA DC DA DC DG SEQRES 3 J 160 DT DG DC DC DT DG DG DA DG DA DC DT DA SEQRES 4 J 160 DG DG DG DA DG DT DA DA DT DC DC DC DC SEQRES 5 J 160 DT DT DG DG DC DG DG DT DT DA DA DA DA SEQRES 6 J 160 DC DG DC DG DG DG DG DG DA DC DA DG DC SEQRES 7 J 160 DG DC DG DT DA DC DG DT DG DC DG DT DT SEQRES 8 J 160 DT DA DA DG DC DG DG DT DG DC DT DA DG SEQRES 9 J 160 DA DG DC DT DG DT DC DT DA DC DG DA DC SEQRES 10 J 160 DC DA DA DT DT DG DA DG DC DG DG DC DC SEQRES 11 J 160 DT DC DG DG DC DA DC DC DG DG DG DA DT SEQRES 12 J 160 DT DC DT DC DC DA DG DG DG DG DA DT DC SEQRES 13 J 160 DG DG DA DT HET ZN K 401 1 HET SAM K 402 27 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 12 ZN ZN 2+ FORMUL 13 SAM C15 H22 N6 O5 S HELIX 1 AA1 LEU K 77 GLY K 94 1 18 HELIX 2 AA2 HIS K 149 SER K 159 1 11 HELIX 3 AA3 GLY K 160 LYS K 170 1 11 HELIX 4 AA4 GLN K 174 THR K 191 1 18 HELIX 5 AA5 GLY K 266 PHE K 270 5 5 HELIX 6 AA6 CYS K 321 ARG K 327 1 7 HELIX 7 AA7 THR K 354 ARG K 360 1 7 HELIX 8 AA8 GLY A 44 SER A 57 1 14 HELIX 9 AA9 ARG A 63 GLN A 76 1 14 HELIX 10 AB1 GLN A 85 HIS A 113 1 29 HELIX 11 AB2 MET A 120 ARG A 131 1 12 HELIX 12 AB3 ASN B 25 ILE B 29 5 5 HELIX 13 AB4 THR B 30 GLY B 42 1 13 HELIX 14 AB5 LEU B 49 ALA B 76 1 28 HELIX 15 AB6 THR B 82 GLY B 94 1 13 HELIX 16 AB7 SER C 18 ALA C 23 1 6 HELIX 17 AB8 PRO C 28 SER C 38 1 11 HELIX 18 AB9 THR C 49 ASN C 71 1 23 HELIX 19 AC1 SER C 73 LYS C 77 5 5 HELIX 20 AC2 THR C 82 ASP C 93 1 12 HELIX 21 AC3 ASP C 93 ILE C 100 1 8 HELIX 22 AC4 TYR D 34 HIS D 46 1 13 HELIX 23 AC5 SER D 53 ASN D 81 1 29 HELIX 24 AC6 THR D 87 LEU D 99 1 13 HELIX 25 AC7 PRO D 100 SER D 120 1 21 HELIX 26 AC8 GLY E 44 GLN E 55 1 12 HELIX 27 AC9 ARG E 63 ASP E 77 1 15 HELIX 28 AD1 GLN E 85 ALA E 114 1 30 HELIX 29 AD2 MET E 120 GLY E 132 1 13 HELIX 30 AD3 ARG F 23 ILE F 29 5 7 HELIX 31 AD4 THR F 30 GLY F 42 1 13 HELIX 32 AD5 LEU F 49 ALA F 76 1 28 HELIX 33 AD6 THR F 82 GLY F 94 1 13 HELIX 34 AD7 SER G 18 ALA G 23 1 6 HELIX 35 AD8 PRO G 28 LYS G 37 1 10 HELIX 36 AD9 THR G 49 LEU G 76 1 28 HELIX 37 AE1 THR G 82 ASP G 93 1 12 HELIX 38 AE2 ASP G 93 ILE G 100 1 8 HELIX 39 AE3 HIS G 114 GLY G 119 1 6 HELIX 40 AE4 GLY G 119 GLN G 124 1 6 HELIX 41 AE5 TYR H 34 HIS H 46 1 13 HELIX 42 AE6 SER H 53 ASN H 81 1 29 HELIX 43 AE7 THR H 87 LEU H 98 1 12 HELIX 44 AE8 PRO H 100 ALA H 121 1 22 SHEET 1 AA1 4 CYS K 230 LEU K 234 0 SHEET 2 AA1 4 ALA K 261 LEU K 265 -1 O LEU K 263 N ALA K 232 SHEET 3 AA1 4 MET K 253 TYR K 254 -1 N MET K 253 O GLN K 262 SHEET 4 AA1 4 MET F 20 VAL F 21 1 O MET F 20 N TYR K 254 SHEET 1 AA2 2 PHE K 281 VAL K 282 0 SHEET 2 AA2 2 CYS K 290 VAL K 291 -1 O CYS K 290 N VAL K 282 SHEET 1 AA3 2 ARG A 83 PHE A 84 0 SHEET 2 AA3 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA4 2 THR A 118 ILE A 119 0 SHEET 2 AA4 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA5 2 ARG C 45 VAL C 46 0 SHEET 2 AA5 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 45 SHEET 1 AA6 2 ARG E 83 PHE E 84 0 SHEET 2 AA6 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA7 2 ARG G 45 VAL G 46 0 SHEET 2 AA7 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 45 SHEET 1 AA8 2 ARG G 80 ILE G 81 0 SHEET 2 AA8 2 GLY H 50 ILE H 51 1 O GLY H 50 N ILE G 81 LINK SG CYS K 319 ZN ZN K 401 1555 1555 2.30 LINK SG CYS K 321 ZN ZN K 401 1555 1555 2.30 LINK SG CYS K 324 ZN ZN K 401 1555 1555 2.30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000