HEADER TOXIN 25-MAY-23 8JHU TITLE LEGIONELLA EFFECTOR PROTEIN SIDI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN SIDI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GST 26,SJ26 ANTIGEN,SJGST; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG2504; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANNOSYLTRANSFERASE, TOXIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.WANG,A.SUBRAMANIAN,S.MUKHERJEE,P.WALTER REVDAT 3 08-MAY-24 8JHU 1 JRNL REVDAT 2 13-MAR-24 8JHU 1 JRNL REVDAT 1 30-AUG-23 8JHU 0 JRNL AUTH A.SUBRAMANIAN,L.WANG,T.MOSS,M.VOORHIES,S.SANGWAN, JRNL AUTH 2 E.STEVENSON,E.H.PULIDO,S.KWOK,R.J.CHALKLEY,K.H.LI, JRNL AUTH 3 N.J.KROGAN,D.L.SWANEY,A.L.BURLINGAME,S.N.FLOOR,A.SIL, JRNL AUTH 4 P.WALTER,S.MUKHERJEE JRNL TITL A LEGIONELLA TOXIN EXHIBITS TRNA MIMICRY AND GLYCOSYL JRNL TITL 2 TRANSFERASE ACTIVITY TO TARGET THE TRANSLATION MACHINERY AND JRNL TITL 3 TRIGGER A RIBOTOXIC STRESS RESPONSE. JRNL REF NAT.CELL BIOL. V. 25 1600 2023 JRNL REFN ISSN 1465-7392 JRNL PMID 37857833 JRNL DOI 10.1038/S41556-023-01248-Z REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 749000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8JHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037634. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LEGIONELLA PNEUMOPHILA EFFECTOR REMARK 245 PROEIN SIDI; LEGIONELLA REMARK 245 PNEUMOPHILA EFFECTOR PROTEIN REMARK 245 SIDI REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -229 REMARK 465 SER A -228 REMARK 465 PRO A -227 REMARK 465 ILE A -226 REMARK 465 LEU A -225 REMARK 465 GLY A -224 REMARK 465 TYR A -223 REMARK 465 TRP A -222 REMARK 465 LYS A -221 REMARK 465 ILE A -220 REMARK 465 LYS A -219 REMARK 465 GLY A -218 REMARK 465 LEU A -217 REMARK 465 VAL A -216 REMARK 465 GLN A -215 REMARK 465 PRO A -214 REMARK 465 THR A -213 REMARK 465 ARG A -212 REMARK 465 LEU A -211 REMARK 465 LEU A -210 REMARK 465 LEU A -209 REMARK 465 GLU A -208 REMARK 465 TYR A -207 REMARK 465 LEU A -206 REMARK 465 GLU A -205 REMARK 465 GLU A -204 REMARK 465 LYS A -203 REMARK 465 TYR A -202 REMARK 465 GLU A -201 REMARK 465 GLU A -200 REMARK 465 HIS A -199 REMARK 465 LEU A -198 REMARK 465 TYR A -197 REMARK 465 GLU A -196 REMARK 465 ARG A -195 REMARK 465 ASP A -194 REMARK 465 GLU A -193 REMARK 465 GLY A -192 REMARK 465 ASP A -191 REMARK 465 LYS A -190 REMARK 465 TRP A -189 REMARK 465 ARG A -188 REMARK 465 ASN A -187 REMARK 465 LYS A -186 REMARK 465 LYS A -185 REMARK 465 PHE A -184 REMARK 465 GLU A -183 REMARK 465 LEU A -182 REMARK 465 GLY A -181 REMARK 465 LEU A -180 REMARK 465 GLU A -179 REMARK 465 PHE A -178 REMARK 465 PRO A -177 REMARK 465 ASN A -176 REMARK 465 LEU A -175 REMARK 465 PRO A -174 REMARK 465 TYR A -173 REMARK 465 TYR A -172 REMARK 465 ILE A -171 REMARK 465 ASP A -170 REMARK 465 GLY A -169 REMARK 465 ASP A -168 REMARK 465 VAL A -167 REMARK 465 LYS A -166 REMARK 465 LEU A -165 REMARK 465 THR A -164 REMARK 465 GLN A -163 REMARK 465 SER A -162 REMARK 465 MET A -161 REMARK 465 ALA A -160 REMARK 465 ILE A -159 REMARK 465 ILE A -158 REMARK 465 ARG A -157 REMARK 465 TYR A -156 REMARK 465 ILE A -155 REMARK 465 ALA A -154 REMARK 465 ASP A -153 REMARK 465 LYS A -152 REMARK 465 HIS A -151 REMARK 465 ASN A -150 REMARK 465 MET A -149 REMARK 465 LEU A -148 REMARK 465 GLY A -147 REMARK 465 GLY A -146 REMARK 465 CYS A -145 REMARK 465 PRO A -144 REMARK 465 LYS A -143 REMARK 465 GLU A -142 REMARK 465 ARG A -141 REMARK 465 ALA A -140 REMARK 465 GLU A -139 REMARK 465 ILE A -138 REMARK 465 SER A -137 REMARK 465 MET A -136 REMARK 465 LEU A -135 REMARK 465 GLU A -134 REMARK 465 GLY A -133 REMARK 465 ALA A -132 REMARK 465 VAL A -131 REMARK 465 LEU A -130 REMARK 465 ASP A -129 REMARK 465 ILE A -128 REMARK 465 ARG A -127 REMARK 465 TYR A -126 REMARK 465 GLY A -125 REMARK 465 VAL A -124 REMARK 465 SER A -123 REMARK 465 ARG A -122 REMARK 465 ILE A -121 REMARK 465 ALA A -120 REMARK 465 TYR A -119 REMARK 465 SER A -118 REMARK 465 LYS A -117 REMARK 465 ASP A -116 REMARK 465 PHE A -115 REMARK 465 GLU A -114 REMARK 465 THR A -113 REMARK 465 LEU A -112 REMARK 465 LYS A -111 REMARK 465 VAL A -110 REMARK 465 ASP A -109 REMARK 465 PHE A -108 REMARK 465 LEU A -107 REMARK 465 SER A -106 REMARK 465 LYS A -105 REMARK 465 LEU A -104 REMARK 465 PRO A -103 REMARK 465 GLU A -102 REMARK 465 MET A -101 REMARK 465 LEU A -100 REMARK 465 LYS A -99 REMARK 465 MET A -98 REMARK 465 PHE A -97 REMARK 465 GLU A -96 REMARK 465 ASP A -95 REMARK 465 ARG A -94 REMARK 465 LEU A -93 REMARK 465 CYS A -92 REMARK 465 HIS A -91 REMARK 465 LYS A -90 REMARK 465 THR A -89 REMARK 465 TYR A -88 REMARK 465 LEU A -87 REMARK 465 ASN A -86 REMARK 465 GLY A -85 REMARK 465 ASP A -84 REMARK 465 HIS A -83 REMARK 465 VAL A -82 REMARK 465 THR A -81 REMARK 465 HIS A -80 REMARK 465 PRO A -79 REMARK 465 ASP A -78 REMARK 465 PHE A -77 REMARK 465 MET A -76 REMARK 465 LEU A -75 REMARK 465 TYR A -74 REMARK 465 ASP A -73 REMARK 465 ALA A -72 REMARK 465 LEU A -71 REMARK 465 ASP A -70 REMARK 465 VAL A -69 REMARK 465 VAL A -68 REMARK 465 LEU A -67 REMARK 465 TYR A -66 REMARK 465 MET A -65 REMARK 465 ASP A -64 REMARK 465 PRO A -63 REMARK 465 MET A -62 REMARK 465 CYS A -61 REMARK 465 LEU A -60 REMARK 465 ASP A -59 REMARK 465 ALA A -58 REMARK 465 PHE A -57 REMARK 465 PRO A -56 REMARK 465 LYS A -55 REMARK 465 LEU A -54 REMARK 465 VAL A -53 REMARK 465 CYS A -52 REMARK 465 PHE A -51 REMARK 465 LYS A -50 REMARK 465 LYS A -49 REMARK 465 ARG A -48 REMARK 465 ILE A -47 REMARK 465 GLU A -46 REMARK 465 ALA A -45 REMARK 465 ILE A -44 REMARK 465 PRO A -43 REMARK 465 GLN A -42 REMARK 465 ILE A -41 REMARK 465 ASP A -40 REMARK 465 LYS A -39 REMARK 465 TYR A -38 REMARK 465 LEU A -37 REMARK 465 LYS A -36 REMARK 465 SER A -35 REMARK 465 SER A -34 REMARK 465 LYS A -33 REMARK 465 TYR A -32 REMARK 465 ILE A -31 REMARK 465 ALA A -30 REMARK 465 TRP A -29 REMARK 465 PRO A -28 REMARK 465 LEU A -27 REMARK 465 GLN A -26 REMARK 465 GLY A -25 REMARK 465 TRP A -24 REMARK 465 GLN A -23 REMARK 465 ALA A -22 REMARK 465 THR A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 GLY A -17 REMARK 465 ASP A -16 REMARK 465 HIS A -15 REMARK 465 PRO A -14 REMARK 465 PRO A -13 REMARK 465 LYS A -12 REMARK 465 SER A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 VAL A -7 REMARK 465 LEU A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 295 REMARK 465 ALA A 296 REMARK 465 VAL A 297 REMARK 465 SER A 298 REMARK 465 ASP A 299 REMARK 465 LYS A 300 REMARK 465 TYR A 301 REMARK 465 PRO A 302 REMARK 465 ASN A 303 REMARK 465 SER A 304 REMARK 465 PHE A 305 REMARK 465 LYS A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 ASN A 309 REMARK 465 GLU A 310 REMARK 465 THR A 311 REMARK 465 GLU A 312 REMARK 465 GLU A 313 REMARK 465 HIS A 314 REMARK 465 ASP A 315 REMARK 465 ASP A 316 REMARK 465 LYS A 317 REMARK 465 LEU A 318 REMARK 465 LYS A 319 REMARK 465 PHE A 320 REMARK 465 ILE A 321 REMARK 465 ASN A 322 REMARK 465 ILE A 323 REMARK 465 ILE A 324 REMARK 465 PHE A 325 REMARK 465 ASN A 326 REMARK 465 ASP A 327 REMARK 465 GLY A 328 REMARK 465 PHE A 329 REMARK 465 SER A 330 REMARK 465 THR A 331 REMARK 465 THR A 332 REMARK 465 TYR A 333 REMARK 465 ASP A 334 REMARK 465 GLN A 335 REMARK 465 GLN A 336 REMARK 465 THR A 337 REMARK 465 PHE A 338 REMARK 465 ILE A 339 REMARK 465 LYS A 340 REMARK 465 ALA A 341 REMARK 465 LEU A 342 REMARK 465 SER A 343 REMARK 465 ALA A 344 REMARK 465 GLN A 788 REMARK 465 HIS A 789 REMARK 465 GLU A 790 REMARK 465 GLU A 791 REMARK 465 GLU A 792 REMARK 465 PRO A 793 REMARK 465 LEU A 830 REMARK 465 ILE A 831 REMARK 465 CYS A 832 REMARK 465 ASP A 833 REMARK 465 ASN A 834 REMARK 465 ILE A 835 REMARK 465 GLU A 836 REMARK 465 ASP A 837 REMARK 465 GLN A 876 REMARK 465 GLU A 877 REMARK 465 GLU A 878 REMARK 465 VAL A 879 REMARK 465 ASP A 880 REMARK 465 GLU A 881 REMARK 465 LEU A 882 REMARK 465 PHE A 883 REMARK 465 GLU A 884 REMARK 465 THR A 885 REMARK 465 VAL A 886 REMARK 465 ASP A 887 REMARK 465 PRO A 888 REMARK 465 VAL A 889 REMARK 465 GLN A 890 REMARK 465 ALA A 891 REMARK 465 GLN A 892 REMARK 465 ILE A 893 REMARK 465 ASP A 894 REMARK 465 ASN A 895 REMARK 465 LEU A 896 REMARK 465 ASP A 897 REMARK 465 ILE A 898 REMARK 465 LEU A 899 REMARK 465 SER A 900 REMARK 465 ASP A 901 REMARK 465 ILE A 902 REMARK 465 LYS A 903 REMARK 465 THR A 904 REMARK 465 PRO A 905 REMARK 465 ARG A 906 REMARK 465 LEU A 907 REMARK 465 CYS A 908 REMARK 465 LEU A 909 REMARK 465 SER A 910 REMARK 465 ARG A 911 REMARK 465 SER A 912 REMARK 465 CYS A 913 REMARK 465 PRO A 914 REMARK 465 GLU A 915 REMARK 465 LEU A 916 REMARK 465 GLY A 917 REMARK 465 PHE A 918 REMARK 465 PHE A 919 REMARK 465 GLY A 920 REMARK 465 SER A 921 REMARK 465 ARG A 922 REMARK 465 ARG A 923 REMARK 465 GLY A 924 REMARK 465 ASP A 925 REMARK 465 LEU A 926 REMARK 465 GLU A 927 REMARK 465 ALA A 928 REMARK 465 LYS A 929 REMARK 465 GLN A 930 REMARK 465 GLU A 931 REMARK 465 ASN A 932 REMARK 465 ASN A 933 REMARK 465 LYS A 934 REMARK 465 LEU A 935 REMARK 465 LYS A 936 REMARK 465 GLU A 937 REMARK 465 SER A 938 REMARK 465 ILE A 939 REMARK 465 LEU A 940 REMARK 465 VAL A 941 REMARK 465 PHE A 942 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 815 CA - N - CD ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 54 -177.84 -67.31 REMARK 500 PRO A 66 3.54 -67.37 REMARK 500 ASN A 76 30.73 -97.98 REMARK 500 SER A 91 12.58 -141.64 REMARK 500 SER A 92 70.96 56.74 REMARK 500 LEU A 232 50.26 -91.47 REMARK 500 LEU A 261 -8.33 71.70 REMARK 500 SER A 266 -1.12 69.44 REMARK 500 MET A 439 59.57 -96.42 REMARK 500 ALA A 587 75.26 57.72 REMARK 500 PRO A 588 76.86 -66.26 REMARK 500 THR A 656 26.16 -61.28 REMARK 500 TYR A 657 -62.38 -148.63 REMARK 500 LYS A 659 -86.39 -58.83 REMARK 500 THR A 660 -74.55 -17.53 REMARK 500 ASN A 665 49.48 -82.38 REMARK 500 ASP A 674 48.49 -93.49 REMARK 500 GLU A 689 31.50 -84.19 REMARK 500 GLU A 690 26.68 26.77 REMARK 500 ASN A 696 71.50 66.61 REMARK 500 ARG A 722 57.58 -99.76 REMARK 500 ILE A 757 -67.60 -95.44 REMARK 500 LYS A 800 15.97 50.43 REMARK 500 ASN A 801 70.55 -162.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 688 10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36294 RELATED DB: EMDB REMARK 900 LEGIONELLA EFFECTOR PROTEIN SIDI DBREF 8JHU A -229 -12 UNP P08515 GST26_SCHJA 1 218 DBREF 8JHU A 1 942 UNP Q5ZSL3 Q5ZSL3_LEGPH 1 942 SEQADV 8JHU SER A -11 UNP P08515 LINKER SEQADV 8JHU ASP A -10 UNP P08515 LINKER SEQADV 8JHU LEU A -9 UNP P08515 LINKER SEQADV 8JHU GLU A -8 UNP P08515 LINKER SEQADV 8JHU VAL A -7 UNP P08515 LINKER SEQADV 8JHU LEU A -6 UNP P08515 LINKER SEQADV 8JHU PHE A -5 UNP P08515 LINKER SEQADV 8JHU GLN A -4 UNP P08515 LINKER SEQADV 8JHU GLY A -3 UNP P08515 LINKER SEQADV 8JHU PRO A -2 UNP P08515 LINKER SEQADV 8JHU GLY A -1 UNP P08515 LINKER SEQADV 8JHU SER A 0 UNP P08515 LINKER SEQRES 1 A 1172 MET SER PRO ILE LEU GLY TYR TRP LYS ILE LYS GLY LEU SEQRES 2 A 1172 VAL GLN PRO THR ARG LEU LEU LEU GLU TYR LEU GLU GLU SEQRES 3 A 1172 LYS TYR GLU GLU HIS LEU TYR GLU ARG ASP GLU GLY ASP SEQRES 4 A 1172 LYS TRP ARG ASN LYS LYS PHE GLU LEU GLY LEU GLU PHE SEQRES 5 A 1172 PRO ASN LEU PRO TYR TYR ILE ASP GLY ASP VAL LYS LEU SEQRES 6 A 1172 THR GLN SER MET ALA ILE ILE ARG TYR ILE ALA ASP LYS SEQRES 7 A 1172 HIS ASN MET LEU GLY GLY CYS PRO LYS GLU ARG ALA GLU SEQRES 8 A 1172 ILE SER MET LEU GLU GLY ALA VAL LEU ASP ILE ARG TYR SEQRES 9 A 1172 GLY VAL SER ARG ILE ALA TYR SER LYS ASP PHE GLU THR SEQRES 10 A 1172 LEU LYS VAL ASP PHE LEU SER LYS LEU PRO GLU MET LEU SEQRES 11 A 1172 LYS MET PHE GLU ASP ARG LEU CYS HIS LYS THR TYR LEU SEQRES 12 A 1172 ASN GLY ASP HIS VAL THR HIS PRO ASP PHE MET LEU TYR SEQRES 13 A 1172 ASP ALA LEU ASP VAL VAL LEU TYR MET ASP PRO MET CYS SEQRES 14 A 1172 LEU ASP ALA PHE PRO LYS LEU VAL CYS PHE LYS LYS ARG SEQRES 15 A 1172 ILE GLU ALA ILE PRO GLN ILE ASP LYS TYR LEU LYS SER SEQRES 16 A 1172 SER LYS TYR ILE ALA TRP PRO LEU GLN GLY TRP GLN ALA SEQRES 17 A 1172 THR PHE GLY GLY GLY ASP HIS PRO PRO LYS SER ASP LEU SEQRES 18 A 1172 GLU VAL LEU PHE GLN GLY PRO GLY SER MET THR LYS ILE SEQRES 19 A 1172 TYR LEU LEU THR ALA PRO PHE ASP GLU GLU ALA LYS THR SEQRES 20 A 1172 GLY ASP GLY GLN TYR ALA ALA SER LEU GLU LEU GLY PHE SEQRES 21 A 1172 ALA GLU ASN TYR GLU HIS ILE PRO CYS LYS TRP LEU LYS SEQRES 22 A 1172 LYS ASP LYS GLY ASP TYR SER ILE PRO PHE PRO THR GLY SEQRES 23 A 1172 THR THR SER ILE PRO GLU GLU THR ILE PRO SER ALA ILE SEQRES 24 A 1172 VAL LEU GLN PRO VAL ALA ASN GLU ASN THR VAL ILE SER SEQRES 25 A 1172 GLY TYR LYS LEU LYS ASP THR VAL SER SER PRO GLU LYS SEQRES 26 A 1172 ALA GLN GLU VAL ASN ASN LYS THR VAL SER PRO ARG THR SEQRES 27 A 1172 PRO LYS ILE ILE VAL LYS HIS ASP ASN SER LEU GLN SER SEQRES 28 A 1172 LEU THR ILE MET ASP ILE TYR SER GLN LYS PRO ILE GLN SEQRES 29 A 1172 PHE ASP GLU SER LYS VAL ASP GLU ILE ILE HIS SER LEU SEQRES 30 A 1172 GLU THR LYS LYS VAL ASN LEU GLU LYS ALA ILE GLU ASP SEQRES 31 A 1172 ASN ASN ALA GLU LEU SER LYS ILE LYS LYS GLN LYS SER SEQRES 32 A 1172 LYS LEU ALA TYR LEU THR ARG LEU TYR LYS GLU ASN LYS SEQRES 33 A 1172 GLU ASN ILE GLN ASP TYR CYS THR LEU ASN GLU TYR ILE SEQRES 34 A 1172 GLU ALA HIS LEU PHE ASN PRO LYS PHE LEU SER ARG HIS SEQRES 35 A 1172 GLU LYS ALA LEU ASN ASN PHE LYS ALA LEU LYS SER GLN SEQRES 36 A 1172 PHE THR GLY PRO VAL ASN LEU LYS GLU LEU GLU LYS LEU SEQRES 37 A 1172 THR ASP LYS LEU THR GLY ILE LYS GLU TYR SER TYR ASP SEQRES 38 A 1172 PHE HIS SER ASN SER LEU PRO TYR ASP LEU GLU HIS ASP SEQRES 39 A 1172 LYS SER PHE ARG ASN PHE TYR ASP PHE ASP GLY LEU LYS SEQRES 40 A 1172 GLU SER ILE GLU SER ILE ILE LYS GLU LEU GLU VAL LEU SEQRES 41 A 1172 ASN SER ILE ARG GLN ALA VAL SER ASP LYS TYR PRO ASN SEQRES 42 A 1172 SER PHE LYS ALA LEU ASN GLU THR GLU GLU HIS ASP ASP SEQRES 43 A 1172 LYS LEU LYS PHE ILE ASN ILE ILE PHE ASN ASP GLY PHE SEQRES 44 A 1172 SER THR THR TYR ASP GLN GLN THR PHE ILE LYS ALA LEU SEQRES 45 A 1172 SER ALA LEU ASP ILE GLU LYS ALA ILE ASP ALA TYR THR SEQRES 46 A 1172 ASN VAL LYS ASN LYS LEU GLU ASN THR GLN ASP ILE ILE SEQRES 47 A 1172 ALA ASN LYS GLU GLY CYS ARG ASN LYS LEU ILE SER GLU SEQRES 48 A 1172 LEU GLN THR LEU ILE ALA ASN LYS GLN GLU PRO TYR LEU SEQRES 49 A 1172 SER ALA ASN GLU LYS LEU GLY GLY PHE TYR SER LYS ARG SEQRES 50 A 1172 LYS LEU SER ALA SER GLU GLY PHE HIS LEU ALA TYR GLN SEQRES 51 A 1172 ALA ASN ARG ARG ASP PRO ILE LYS PRO GLU VAL ILE GLU SEQRES 52 A 1172 ASN ILE ILE THR LYS MET LYS PRO ILE ASP GLU ASP THR SEQRES 53 A 1172 HIS LEU ASP ILE HIS ILE ARG PRO PRO ASP CYS GLY VAL SEQRES 54 A 1172 PHE ILE THR PRO GLU ASP ILE LYS LYS PHE GLN GLU ALA SEQRES 55 A 1172 GLY ILE LYS VAL ASN ILE THR ILE HIS GLU TYR LYS GLN SEQRES 56 A 1172 ASN TYR THR ARG ARG TYR LEU GLN GLN TYR THR HIS ASP SEQRES 57 A 1172 LEU MET ARG GLN ALA ASN SER VAL GLN PHE PHE ASN ALA SEQRES 58 A 1172 GLU ASP ARG GLU ASN ALA ILE ILE ALA ALA THR TYR GLY SEQRES 59 A 1172 ASP CYS ASP LYS ARG ASN THR THR GLU PRO THR GLY VAL SEQRES 60 A 1172 ALA LYS LYS ILE ARG GLU VAL GLY GLU ASP PHE ASP LEU SEQRES 61 A 1172 ASP LYS TYR PRO VAL GLN LYS TYR ASP LEU LYS GLY LYS SEQRES 62 A 1172 SER GLY LEU THR VAL ALA SER GLN LYS LEU SER THR GLU SEQRES 63 A 1172 PRO ASP HIS PRO LEU ASP VAL VAL ALA LYS ALA PRO ASN SEQRES 64 A 1172 ILE LEU SER PHE GLY THR ILE ARG PRO GLY LYS GLY PHE SEQRES 65 A 1172 GLU GLU ALA LEU LYS LEU ALA GLN LEU ILE LYS ASP ASN SEQRES 66 A 1172 SER LEU SER ILE HIS GLU LYS ILE LYS ARG VAL PRO ILE SEQRES 67 A 1172 VAL LYS LEU ALA GLY ASP PRO GLN ASP LYS ALA LEU MET SEQRES 68 A 1172 LYS GLN ILE VAL VAL GLU ARG PHE GLY LYS THR ALA VAL SEQRES 69 A 1172 LYS THR TYR GLN LYS THR HIS PRO TYR ASP ASN ARG PHE SEQRES 70 A 1172 ASN ASN SER GLN ARG ARG ASP TYR TRP LYS ASN LEU VAL SEQRES 71 A 1172 ARG GLU LEU ASN ALA LYS VAL LYS GLU GLU VAL ALA VAL SEQRES 72 A 1172 LEU ASN ASN PRO TYR ILE GLU ILE TYR PRO TRP CYS GLU SEQRES 73 A 1172 PRO HIS GLU LEU LEU ASP LEU LYS GLN ASN CYS LYS TYR SEQRES 74 A 1172 VAL CYS ARG MET ASP ASP MET GLY MET ARG ASN ASN GLY SEQRES 75 A 1172 SER ALA ILE ILE SER VAL LEU ASP VAL GLY VAL VAL TYR SEQRES 76 A 1172 THR LYS PHE GLY SER VAL THR ASP ASP ILE PHE ILE LYS SEQRES 77 A 1172 GLY GLY LYS TYR GLY ASN ALA VAL ASP ILE GLY GLU TYR SEQRES 78 A 1172 ARG TYR GLY LYS TYR SER LEU LEU LYS LYS GLU LYS GLU SEQRES 79 A 1172 PHE LYS GLU GLN HIS GLU GLU GLU PRO LEU PRO LYS TRP SEQRES 80 A 1172 LEU ILE LYS ASN PRO ASP SER ALA TYR LYS ARG GLN SER SEQRES 81 A 1172 GLU SER ARG ASP PRO LYS ASP ILE LEU ASP SER ILE VAL SEQRES 82 A 1172 ALA ARG GLU GLU ASN GLN LEU ILE CYS ASP ASN ILE GLU SEQRES 83 A 1172 ASP SER ASP ASN TYR ARG THR VAL VAL GLU ALA GLN LYS SEQRES 84 A 1172 LEU LEU LYS GLU ARG PHE THR LEU LYS ASN ALA VAL ASP SEQRES 85 A 1172 HIS LEU LEU GLU ASN ILE GLY LEU GLY HIS LEU ILE ALA SEQRES 86 A 1172 GLN GLU GLU VAL ASP GLU LEU PHE GLU THR VAL ASP PRO SEQRES 87 A 1172 VAL GLN ALA GLN ILE ASP ASN LEU ASP ILE LEU SER ASP SEQRES 88 A 1172 ILE LYS THR PRO ARG LEU CYS LEU SER ARG SER CYS PRO SEQRES 89 A 1172 GLU LEU GLY PHE PHE GLY SER ARG ARG GLY ASP LEU GLU SEQRES 90 A 1172 ALA LYS GLN GLU ASN ASN LYS LEU LYS GLU SER ILE LEU SEQRES 91 A 1172 VAL PHE HELIX 1 AA1 THR A 17 TYR A 34 1 18 HELIX 2 AA2 VAL A 70 ALA A 75 1 6 HELIX 3 AA3 GLU A 94 THR A 103 1 10 HELIX 4 AA4 ASP A 136 SER A 166 1 31 HELIX 5 AA5 LYS A 170 LYS A 183 1 14 HELIX 6 AA6 THR A 194 PHE A 204 1 11 HELIX 7 AA7 PHE A 204 GLN A 225 1 22 HELIX 8 AA8 GLU A 234 THR A 243 1 10 HELIX 9 AA9 PHE A 267 TYR A 271 5 5 HELIX 10 AB1 ASP A 272 ARG A 294 1 23 HELIX 11 AB2 ILE A 347 LEU A 361 1 15 HELIX 12 AB3 THR A 364 ALA A 369 1 6 HELIX 13 AB4 GLY A 373 ASN A 388 1 16 HELIX 14 AB5 PRO A 392 ASN A 397 1 6 HELIX 15 AB6 GLU A 398 LEU A 400 5 3 HELIX 16 AB7 SER A 410 ARG A 424 1 15 HELIX 17 AB8 ILE A 427 MET A 439 1 13 HELIX 18 AB9 THR A 462 ALA A 472 1 11 HELIX 19 AC1 TYR A 483 THR A 488 5 6 HELIX 20 AC2 ARG A 489 ALA A 503 1 15 HELIX 21 AC3 ALA A 511 GLY A 524 1 14 HELIX 22 AC4 ASP A 527 THR A 531 5 5 HELIX 23 AC5 GLU A 533 VAL A 544 1 12 HELIX 24 AC6 HIS A 579 ALA A 585 1 7 HELIX 25 AC7 GLY A 601 ASN A 615 1 15 HELIX 26 AC8 ASN A 615 HIS A 620 1 6 HELIX 27 AC9 ASP A 637 GLY A 650 1 14 HELIX 28 AD1 LYS A 651 LYS A 659 1 9 HELIX 29 AD2 ARG A 672 LEU A 683 1 12 HELIX 30 AD3 GLU A 706 ASN A 716 1 11 HELIX 31 AD4 GLY A 732 SER A 737 1 6 HELIX 32 AD5 TYR A 773 TYR A 776 5 4 HELIX 33 AD6 SER A 777 LYS A 786 1 10 HELIX 34 AD7 ALA A 805 GLN A 809 5 5 HELIX 35 AD8 ASP A 814 GLU A 827 1 14 HELIX 36 AD9 ASP A 839 ARG A 854 1 16 HELIX 37 AE1 THR A 856 ILE A 868 1 13 HELIX 38 AE2 LEU A 870 ILE A 874 5 5 SHEET 1 AA1 5 LYS A 40 LEU A 42 0 SHEET 2 AA1 5 LYS A 3 LEU A 7 1 N LEU A 6 O LEU A 42 SHEET 3 AA1 5 THR A 446 ILE A 452 1 O HIS A 447 N LYS A 3 SHEET 4 AA1 5 LYS A 475 ILE A 480 1 O ASN A 477 N LEU A 448 SHEET 5 AA1 5 SER A 505 PHE A 508 1 O GLN A 507 N ILE A 480 SHEET 1 AA2 5 THR A 58 SER A 59 0 SHEET 2 AA2 5 SER A 82 LYS A 85 -1 O LYS A 85 N THR A 58 SHEET 3 AA2 5 LYS A 110 VAL A 113 1 O VAL A 113 N TYR A 84 SHEET 4 AA2 5 LEU A 119 MET A 125 -1 O THR A 123 N LYS A 110 SHEET 5 AA2 5 PRO A 132 GLN A 134 -1 O ILE A 133 N ILE A 124 SHEET 1 AA3 6 ILE A 699 PRO A 703 0 SHEET 2 AA3 6 VAL A 629 GLY A 633 1 N LEU A 631 O GLU A 700 SHEET 3 AA3 6 ILE A 590 SER A 592 1 N ILE A 590 O LYS A 630 SHEET 4 AA3 6 TYR A 719 CYS A 721 1 O CYS A 721 N LEU A 591 SHEET 5 AA3 6 VAL A 743 TYR A 745 1 O TYR A 745 N VAL A 720 SHEET 6 AA3 6 VAL A 766 ASP A 767 1 O ASP A 767 N VAL A 744 CISPEP 1 ALA A 9 PRO A 10 0 -4.69 CISPEP 2 GLU A 391 PRO A 392 0 -0.02 CISPEP 3 LYS A 440 PRO A 441 0 -2.64 CISPEP 4 PRO A 454 PRO A 455 0 -4.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000