HEADER TRANSFERASE 31-MAY-23 8JJQ TITLE STRUCTURE OF SENB IN COMPLEX WITH UDP-GALNAC AT 1.64 ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIGR04348 FAMILY GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: C, A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VARIOVORAX PARADOXUS; SOURCE 3 ORGANISM_TAXID: 34073; SOURCE 4 GENE: JF629_18585; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UDP-GALNAC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.FENG,H.WEI REVDAT 2 23-OCT-24 8JJQ 1 REMARK REVDAT 1 07-FEB-24 8JJQ 0 JRNL AUTH H.WEI,L.FENG JRNL TITL STRUCTURE OF SENB IN COMPLEX WITH UDP-GALNAC AT 1.64 JRNL TITL 2 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 150266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 7648 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 25.71 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3006 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 1095 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.29000 REMARK 3 B22 (A**2) : -3.81000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 07-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 49.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5000-MME, 0.1M BIS-TRIS PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.153K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.18850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 SER C 288 REMARK 465 LYS C 289 REMARK 465 ASP C 290 REMARK 465 ARG C 291 REMARK 465 ALA C 292 REMARK 465 PRO C 328 REMARK 465 PRO C 329 REMARK 465 PRO C 330 REMARK 465 PRO C 331 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 287 REMARK 465 SER A 288 REMARK 465 LYS A 289 REMARK 465 ASP A 290 REMARK 465 ARG A 291 REMARK 465 ALA A 292 REMARK 465 PRO A 329 REMARK 465 PRO A 330 REMARK 465 PRO A 331 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 288 REMARK 465 LYS B 289 REMARK 465 ASP B 290 REMARK 465 ARG B 291 REMARK 465 ALA B 292 REMARK 465 PRO B 328 REMARK 465 PRO B 329 REMARK 465 PRO B 330 REMARK 465 PRO B 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 22 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 283 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 22 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 22 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 127 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 173 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG B 173 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 173 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS C 58 106.07 83.85 REMARK 500 GLN C 89 -68.30 -150.67 REMARK 500 ALA C 184 55.49 -92.10 REMARK 500 HIS A 58 107.34 83.48 REMARK 500 HIS A 73 59.55 -143.10 REMARK 500 GLN A 89 -51.19 -138.18 REMARK 500 SER A 93 41.10 -155.54 REMARK 500 ALA A 187 108.32 -31.10 REMARK 500 ASN B 17 76.65 -106.61 REMARK 500 HIS B 58 105.23 84.91 REMARK 500 GLN B 89 -75.98 -141.81 REMARK 500 SER B 93 0.94 -153.68 REMARK 500 ALA B 187 108.72 -44.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 89 ASP A 90 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 885 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH C 886 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 887 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C 888 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH C 889 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH C 890 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH C 891 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 874 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 829 DISTANCE = 6.93 ANGSTROMS DBREF1 8JJQ C 1 331 UNP A0A952K6X5_VARPD DBREF2 8JJQ C A0A952K6X5 1 331 DBREF1 8JJQ A 1 331 UNP A0A952K6X5_VARPD DBREF2 8JJQ A A0A952K6X5 1 331 DBREF1 8JJQ B 1 331 UNP A0A952K6X5_VARPD DBREF2 8JJQ B A0A952K6X5 1 331 SEQADV 8JJQ VAL C 34 UNP A0A952K6X ALA 34 CONFLICT SEQADV 8JJQ ASP C 47 UNP A0A952K6X GLY 47 CONFLICT SEQADV 8JJQ SER C 134 UNP A0A952K6X PRO 134 CONFLICT SEQADV 8JJQ GLU C 174 UNP A0A952K6X GLY 174 CONFLICT SEQADV 8JJQ VAL A 34 UNP A0A952K6X ALA 34 CONFLICT SEQADV 8JJQ ASP A 47 UNP A0A952K6X GLY 47 CONFLICT SEQADV 8JJQ SER A 134 UNP A0A952K6X PRO 134 CONFLICT SEQADV 8JJQ GLU A 174 UNP A0A952K6X GLY 174 CONFLICT SEQADV 8JJQ VAL B 34 UNP A0A952K6X ALA 34 CONFLICT SEQADV 8JJQ ASP B 47 UNP A0A952K6X GLY 47 CONFLICT SEQADV 8JJQ SER B 134 UNP A0A952K6X PRO 134 CONFLICT SEQADV 8JJQ GLU B 174 UNP A0A952K6X GLY 174 CONFLICT SEQRES 1 C 331 MET SER ASN PRO SER LEU VAL ILE VAL SER PRO ALA LEU SEQRES 2 C 331 PRO GLY ALA ASN ASN GLY ASN TRP ARG THR ALA GLN ARG SEQRES 3 C 331 TRP LYS ALA LEU LEU SER PRO VAL CYS SER ALA ARG VAL SEQRES 4 C 331 VAL GLN GLN TRP PRO ASP ALA ASP ALA SER ALA ASP THR SEQRES 5 C 331 VAL MET LEU ALA LEU HIS ALA ARG ARG SER ALA GLU SER SEQRES 6 C 331 ILE ALA HIS TRP ALA HIS ALA HIS PRO GLY ARG GLY LEU SEQRES 7 C 331 GLY VAL VAL LEU THR GLY THR ASP LEU TYR GLN ASP ILE SEQRES 8 C 331 GLY SER ASP PRO GLN ALA GLN ARG SER LEU GLN LEU ALA SEQRES 9 C 331 GLN ARG LEU VAL VAL LEU GLN ALA LEU GLY ALA GLU ALA SEQRES 10 C 331 LEU PRO PRO GLU CYS ARG ALA LYS ALA ARG VAL VAL TYR SEQRES 11 C 331 GLN SER THR SER ALA ARG ALA GLU LEU PRO LYS SER ALA SEQRES 12 C 331 ARG GLN LEU ARG ALA VAL MET VAL GLY HIS LEU ARG GLN SEQRES 13 C 331 VAL LYS SER PRO GLN THR LEU PHE ASP ALA ALA ARG LEU SEQRES 14 C 331 LEU CYS GLY ARG GLU ASP ILE ARG ILE ASP HIS ILE GLY SEQRES 15 C 331 ASP ALA GLY ASP ALA GLY LEU GLY GLU LEU ALA ARG ALA SEQRES 16 C 331 LEU ALA SER ASP CYS PRO GLY TYR ARG TRP LEU GLY ALA SEQRES 17 C 331 LEU PRO HIS ALA GLN THR ARG GLN ARG ILE GLN ARG ALA SEQRES 18 C 331 HIS VAL LEU VAL HIS THR SER ALA LEU GLU GLY GLY ALA SEQRES 19 C 331 HIS VAL ILE MET GLU ALA VAL ARG SER GLY THR PRO VAL SEQRES 20 C 331 LEU ALA SER ARG VAL PRO GLY ASN VAL GLY MET LEU GLY SEQRES 21 C 331 ASN ASP TYR ALA GLY TYR PHE PRO HIS GLY ASP ALA ALA SEQRES 22 C 331 ALA LEU ALA ALA LEU LEU GLU ALA CYS ARG ALA GLY GLN SEQRES 23 C 331 GLY SER LYS ASP ARG ALA ALA GLY LEU LEU ASP SER LEU SEQRES 24 C 331 ARG THR GLN CYS ALA LEU ARG ALA PRO LEU PHE ASP PRO SEQRES 25 C 331 ARG ALA GLU GLN ALA ALA LEU PHE GLN LEU LEU ASN GLU SEQRES 26 C 331 LEU GLN PRO PRO PRO PRO SEQRES 1 A 331 MET SER ASN PRO SER LEU VAL ILE VAL SER PRO ALA LEU SEQRES 2 A 331 PRO GLY ALA ASN ASN GLY ASN TRP ARG THR ALA GLN ARG SEQRES 3 A 331 TRP LYS ALA LEU LEU SER PRO VAL CYS SER ALA ARG VAL SEQRES 4 A 331 VAL GLN GLN TRP PRO ASP ALA ASP ALA SER ALA ASP THR SEQRES 5 A 331 VAL MET LEU ALA LEU HIS ALA ARG ARG SER ALA GLU SER SEQRES 6 A 331 ILE ALA HIS TRP ALA HIS ALA HIS PRO GLY ARG GLY LEU SEQRES 7 A 331 GLY VAL VAL LEU THR GLY THR ASP LEU TYR GLN ASP ILE SEQRES 8 A 331 GLY SER ASP PRO GLN ALA GLN ARG SER LEU GLN LEU ALA SEQRES 9 A 331 GLN ARG LEU VAL VAL LEU GLN ALA LEU GLY ALA GLU ALA SEQRES 10 A 331 LEU PRO PRO GLU CYS ARG ALA LYS ALA ARG VAL VAL TYR SEQRES 11 A 331 GLN SER THR SER ALA ARG ALA GLU LEU PRO LYS SER ALA SEQRES 12 A 331 ARG GLN LEU ARG ALA VAL MET VAL GLY HIS LEU ARG GLN SEQRES 13 A 331 VAL LYS SER PRO GLN THR LEU PHE ASP ALA ALA ARG LEU SEQRES 14 A 331 LEU CYS GLY ARG GLU ASP ILE ARG ILE ASP HIS ILE GLY SEQRES 15 A 331 ASP ALA GLY ASP ALA GLY LEU GLY GLU LEU ALA ARG ALA SEQRES 16 A 331 LEU ALA SER ASP CYS PRO GLY TYR ARG TRP LEU GLY ALA SEQRES 17 A 331 LEU PRO HIS ALA GLN THR ARG GLN ARG ILE GLN ARG ALA SEQRES 18 A 331 HIS VAL LEU VAL HIS THR SER ALA LEU GLU GLY GLY ALA SEQRES 19 A 331 HIS VAL ILE MET GLU ALA VAL ARG SER GLY THR PRO VAL SEQRES 20 A 331 LEU ALA SER ARG VAL PRO GLY ASN VAL GLY MET LEU GLY SEQRES 21 A 331 ASN ASP TYR ALA GLY TYR PHE PRO HIS GLY ASP ALA ALA SEQRES 22 A 331 ALA LEU ALA ALA LEU LEU GLU ALA CYS ARG ALA GLY GLN SEQRES 23 A 331 GLY SER LYS ASP ARG ALA ALA GLY LEU LEU ASP SER LEU SEQRES 24 A 331 ARG THR GLN CYS ALA LEU ARG ALA PRO LEU PHE ASP PRO SEQRES 25 A 331 ARG ALA GLU GLN ALA ALA LEU PHE GLN LEU LEU ASN GLU SEQRES 26 A 331 LEU GLN PRO PRO PRO PRO SEQRES 1 B 331 MET SER ASN PRO SER LEU VAL ILE VAL SER PRO ALA LEU SEQRES 2 B 331 PRO GLY ALA ASN ASN GLY ASN TRP ARG THR ALA GLN ARG SEQRES 3 B 331 TRP LYS ALA LEU LEU SER PRO VAL CYS SER ALA ARG VAL SEQRES 4 B 331 VAL GLN GLN TRP PRO ASP ALA ASP ALA SER ALA ASP THR SEQRES 5 B 331 VAL MET LEU ALA LEU HIS ALA ARG ARG SER ALA GLU SER SEQRES 6 B 331 ILE ALA HIS TRP ALA HIS ALA HIS PRO GLY ARG GLY LEU SEQRES 7 B 331 GLY VAL VAL LEU THR GLY THR ASP LEU TYR GLN ASP ILE SEQRES 8 B 331 GLY SER ASP PRO GLN ALA GLN ARG SER LEU GLN LEU ALA SEQRES 9 B 331 GLN ARG LEU VAL VAL LEU GLN ALA LEU GLY ALA GLU ALA SEQRES 10 B 331 LEU PRO PRO GLU CYS ARG ALA LYS ALA ARG VAL VAL TYR SEQRES 11 B 331 GLN SER THR SER ALA ARG ALA GLU LEU PRO LYS SER ALA SEQRES 12 B 331 ARG GLN LEU ARG ALA VAL MET VAL GLY HIS LEU ARG GLN SEQRES 13 B 331 VAL LYS SER PRO GLN THR LEU PHE ASP ALA ALA ARG LEU SEQRES 14 B 331 LEU CYS GLY ARG GLU ASP ILE ARG ILE ASP HIS ILE GLY SEQRES 15 B 331 ASP ALA GLY ASP ALA GLY LEU GLY GLU LEU ALA ARG ALA SEQRES 16 B 331 LEU ALA SER ASP CYS PRO GLY TYR ARG TRP LEU GLY ALA SEQRES 17 B 331 LEU PRO HIS ALA GLN THR ARG GLN ARG ILE GLN ARG ALA SEQRES 18 B 331 HIS VAL LEU VAL HIS THR SER ALA LEU GLU GLY GLY ALA SEQRES 19 B 331 HIS VAL ILE MET GLU ALA VAL ARG SER GLY THR PRO VAL SEQRES 20 B 331 LEU ALA SER ARG VAL PRO GLY ASN VAL GLY MET LEU GLY SEQRES 21 B 331 ASN ASP TYR ALA GLY TYR PHE PRO HIS GLY ASP ALA ALA SEQRES 22 B 331 ALA LEU ALA ALA LEU LEU GLU ALA CYS ARG ALA GLY GLN SEQRES 23 B 331 GLY SER LYS ASP ARG ALA ALA GLY LEU LEU ASP SER LEU SEQRES 24 B 331 ARG THR GLN CYS ALA LEU ARG ALA PRO LEU PHE ASP PRO SEQRES 25 B 331 ARG ALA GLU GLN ALA ALA LEU PHE GLN LEU LEU ASN GLU SEQRES 26 B 331 LEU GLN PRO PRO PRO PRO HET UD2 C 401 39 HET UD2 A 401 39 HET UD2 B 401 39 HETNAM UD2 URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE HETSYN UD2 (2R,3R,4R,5R,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6- HETSYN 2 UD2 (HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,4R, HETSYN 3 UD2 5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 4 UD2 DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETSYN 5 UD2 DIPHOSPHATE FORMUL 4 UD2 3(C17 H27 N3 O17 P2) FORMUL 7 HOH *1095(H2 O) HELIX 1 AA1 ASN C 18 SER C 32 1 15 HELIX 2 AA2 ASP C 47 ASP C 51 5 5 HELIX 3 AA3 SER C 62 HIS C 73 1 12 HELIX 4 AA4 ASP C 94 ALA C 104 1 11 HELIX 5 AA5 LEU C 113 LEU C 118 5 6 HELIX 6 AA6 PRO C 119 ARG C 123 5 5 HELIX 7 AA7 ARG C 155 LYS C 158 5 4 HELIX 8 AA8 SER C 159 LEU C 170 1 12 HELIX 9 AA9 GLY C 188 CYS C 200 1 13 HELIX 10 AB1 PRO C 210 ALA C 221 1 12 HELIX 11 AB2 ALA C 234 ARG C 242 1 9 HELIX 12 AB3 VAL C 252 GLY C 260 1 9 HELIX 13 AB4 ASP C 271 GLN C 286 1 16 HELIX 14 AB5 GLY C 294 ALA C 307 1 14 HELIX 15 AB6 PRO C 308 PHE C 310 5 3 HELIX 16 AB7 ASP C 311 GLN C 327 1 17 HELIX 17 AB8 ASN A 18 SER A 32 1 15 HELIX 18 AB9 ASP A 47 ASP A 51 5 5 HELIX 19 AC1 SER A 62 HIS A 73 1 12 HELIX 20 AC2 GLY A 84 GLN A 89 1 6 HELIX 21 AC3 ASP A 90 SER A 93 5 4 HELIX 22 AC4 ASP A 94 ALA A 104 1 11 HELIX 23 AC5 LEU A 113 LEU A 118 5 6 HELIX 24 AC6 PRO A 119 ALA A 124 5 6 HELIX 25 AC7 ARG A 155 LYS A 158 5 4 HELIX 26 AC8 SER A 159 LEU A 170 1 12 HELIX 27 AC9 GLY A 188 CYS A 200 1 13 HELIX 28 AD1 PRO A 210 ALA A 221 1 12 HELIX 29 AD2 ALA A 234 ARG A 242 1 9 HELIX 30 AD3 VAL A 252 GLY A 260 1 9 HELIX 31 AD4 ASP A 271 GLN A 286 1 16 HELIX 32 AD5 GLY A 294 ALA A 307 1 14 HELIX 33 AD6 PRO A 308 PHE A 310 5 3 HELIX 34 AD7 ASP A 311 GLN A 327 1 17 HELIX 35 AD8 ASN B 18 SER B 32 1 15 HELIX 36 AD9 ASP B 47 ASP B 51 5 5 HELIX 37 AE1 SER B 62 HIS B 73 1 12 HELIX 38 AE2 GLY B 84 GLN B 89 1 6 HELIX 39 AE3 ASP B 90 SER B 93 5 4 HELIX 40 AE4 ASP B 94 ALA B 104 1 11 HELIX 41 AE5 LEU B 113 LEU B 118 5 6 HELIX 42 AE6 PRO B 119 ALA B 124 5 6 HELIX 43 AE7 ARG B 155 LYS B 158 5 4 HELIX 44 AE8 SER B 159 LEU B 170 1 12 HELIX 45 AE9 GLY B 188 CYS B 200 1 13 HELIX 46 AF1 PRO B 210 ALA B 221 1 12 HELIX 47 AF2 ALA B 234 ARG B 242 1 9 HELIX 48 AF3 VAL B 252 GLY B 260 1 9 HELIX 49 AF4 ASP B 271 GLY B 285 1 15 HELIX 50 AF5 GLY B 294 ALA B 307 1 14 HELIX 51 AF6 PRO B 308 PHE B 310 5 3 HELIX 52 AF7 ASP B 311 GLN B 327 1 17 SHEET 1 AA1 6 SER C 36 VAL C 40 0 SHEET 2 AA1 6 SER C 5 VAL C 9 1 N ILE C 8 O ARG C 38 SHEET 3 AA1 6 VAL C 53 LEU C 57 1 O LEU C 57 N VAL C 9 SHEET 4 AA1 6 LEU C 78 VAL C 81 1 O VAL C 81 N ALA C 56 SHEET 5 AA1 6 ARG C 106 VAL C 109 1 O VAL C 108 N VAL C 80 SHEET 6 AA1 6 ALA C 126 VAL C 128 1 O ARG C 127 N LEU C 107 SHEET 1 AA2 6 TYR C 203 GLY C 207 0 SHEET 2 AA2 6 ILE C 176 ILE C 181 1 N HIS C 180 O LEU C 206 SHEET 3 AA2 6 LEU C 146 VAL C 151 1 N LEU C 146 O ARG C 177 SHEET 4 AA2 6 VAL C 223 HIS C 226 1 O VAL C 225 N VAL C 149 SHEET 5 AA2 6 VAL C 247 SER C 250 1 O LEU C 248 N LEU C 224 SHEET 6 AA2 6 TYR C 266 PHE C 267 1 O PHE C 267 N ALA C 249 SHEET 1 AA3 6 SER A 36 VAL A 40 0 SHEET 2 AA3 6 SER A 5 VAL A 9 1 N LEU A 6 O SER A 36 SHEET 3 AA3 6 VAL A 53 LEU A 57 1 O LEU A 57 N VAL A 9 SHEET 4 AA3 6 LEU A 78 VAL A 81 1 O VAL A 81 N ALA A 56 SHEET 5 AA3 6 ARG A 106 VAL A 109 1 O VAL A 108 N VAL A 80 SHEET 6 AA3 6 ALA A 126 VAL A 128 1 O ARG A 127 N LEU A 107 SHEET 1 AA4 6 TYR A 203 TRP A 205 0 SHEET 2 AA4 6 ILE A 176 ILE A 181 1 N ILE A 178 O ARG A 204 SHEET 3 AA4 6 LEU A 146 VAL A 151 1 N MET A 150 O ILE A 181 SHEET 4 AA4 6 VAL A 223 HIS A 226 1 O VAL A 225 N VAL A 149 SHEET 5 AA4 6 VAL A 247 SER A 250 1 O LEU A 248 N LEU A 224 SHEET 6 AA4 6 TYR A 266 PHE A 267 1 O PHE A 267 N ALA A 249 SHEET 1 AA5 6 SER B 36 VAL B 40 0 SHEET 2 AA5 6 SER B 5 VAL B 9 1 N LEU B 6 O SER B 36 SHEET 3 AA5 6 VAL B 53 LEU B 57 1 O LEU B 57 N VAL B 9 SHEET 4 AA5 6 LEU B 78 VAL B 81 1 O GLY B 79 N MET B 54 SHEET 5 AA5 6 ARG B 106 VAL B 109 1 O VAL B 108 N VAL B 80 SHEET 6 AA5 6 ALA B 126 VAL B 128 1 O ARG B 127 N VAL B 109 SHEET 1 AA6 6 TYR B 203 GLY B 207 0 SHEET 2 AA6 6 ILE B 176 ILE B 181 1 N ILE B 178 O ARG B 204 SHEET 3 AA6 6 LEU B 146 VAL B 151 1 N MET B 150 O ILE B 181 SHEET 4 AA6 6 VAL B 223 HIS B 226 1 O VAL B 225 N VAL B 149 SHEET 5 AA6 6 VAL B 247 SER B 250 1 O LEU B 248 N LEU B 224 SHEET 6 AA6 6 TYR B 266 PHE B 267 1 O PHE B 267 N ALA B 249 SSBOND 1 CYS C 171 CYS C 200 1555 1555 2.17 SSBOND 2 CYS A 171 CYS A 200 1555 1555 2.21 SSBOND 3 CYS B 171 CYS B 200 1555 1555 2.23 CISPEP 1 TRP C 43 PRO C 44 0 1.58 CISPEP 2 TRP A 43 PRO A 44 0 5.40 CISPEP 3 TRP B 43 PRO B 44 0 2.45 CRYST1 108.114 56.377 108.130 90.00 91.01 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009249 0.000000 0.000162 0.00000 SCALE2 0.000000 0.017738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009250 0.00000