HEADER TRANSCRIPTION 01-JUN-23 8JKN TITLE T95R MUTANT IRF4 DNA-BINDING DOMAIN BOUND TO AN DNA CONTAINING GAAA TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAAA-FORWARD; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GAAA-REVERSE; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERFERON REGULATORY FACTOR 4; COMPND 11 CHAIN: C, D, G, H; COMPND 12 FRAGMENT: DNA-BINDING DOMAIN; COMPND 13 SYNONYM: INTERFERON REGULATORY FACTOR 4,ISOFORM CRA_E; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IRF4, HCG_20902; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IRF4, TRANSCRIPTION FACTOR, PROTEIN-DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.WANG,X.FENG,J.DING REVDAT 2 15-NOV-23 8JKN 1 JRNL REVDAT 1 20-SEP-23 8JKN 0 JRNL AUTH G.WANG,X.FENG,J.DING JRNL TITL MOLECULAR BASIS FOR THE FUNCTIONAL ROLES OF THE MULTIMORPHIC JRNL TITL 2 T95R MUTATION OF IRF4 CAUSING HUMAN AUTOSOMAL DOMINANT JRNL TITL 3 COMBINED IMMUNODEFICIENCY. JRNL REF STRUCTURE V. 31 1441 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37683642 JRNL DOI 10.1016/J.STR.2023.08.013 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7500 - 6.2800 0.99 2816 124 0.1981 0.1806 REMARK 3 2 6.2800 - 4.9900 1.00 2704 138 0.2009 0.2228 REMARK 3 3 4.9900 - 4.3600 1.00 2661 142 0.1974 0.2398 REMARK 3 4 4.3600 - 3.9600 1.00 2625 159 0.2024 0.2237 REMARK 3 5 3.9600 - 3.6700 1.00 2601 169 0.2142 0.2715 REMARK 3 6 3.6700 - 3.4600 1.00 2684 119 0.2363 0.2388 REMARK 3 7 3.4600 - 3.2800 1.00 2577 182 0.2311 0.2714 REMARK 3 8 3.2800 - 3.1400 0.99 2576 134 0.2391 0.2573 REMARK 3 9 3.1400 - 3.0200 1.00 2642 124 0.2898 0.3645 REMARK 3 10 3.0200 - 2.9200 1.00 2616 121 0.3512 0.3898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5506 REMARK 3 ANGLE : 1.197 7756 REMARK 3 CHIRALITY : 0.086 798 REMARK 3 PLANARITY : 0.008 733 REMARK 3 DIHEDRAL : 26.283 1228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9752 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 102.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : 0.26100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 16.10 REMARK 200 R MERGE FOR SHELL (I) : 1.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7JM4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MGCL2, 0.1 M SODIUM CITRATE (PH REMARK 280 5.0) AND 15% (W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.54900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.09800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.09800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.54900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 20 REMARK 465 GLU C 130 REMARK 465 GLY C 131 REMARK 465 ALA C 132 REMARK 465 LYS C 133 REMARK 465 LYS C 134 REMARK 465 GLY C 135 REMARK 465 GLY D 20 REMARK 465 ASN D 21 REMARK 465 ASP D 61 REMARK 465 TYR D 62 REMARK 465 GLY D 131 REMARK 465 ALA D 132 REMARK 465 LYS D 133 REMARK 465 LYS D 134 REMARK 465 GLY D 135 REMARK 465 GLY G 20 REMARK 465 GLU G 130 REMARK 465 GLY G 131 REMARK 465 ALA G 132 REMARK 465 LYS G 133 REMARK 465 LYS G 134 REMARK 465 GLY G 135 REMARK 465 GLY H 20 REMARK 465 ASN H 21 REMARK 465 GLY H 131 REMARK 465 ALA H 132 REMARK 465 LYS H 133 REMARK 465 LYS H 134 REMARK 465 GLY H 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU D 130 CG CD OE1 OE2 REMARK 470 GLU H 130 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP G 89 OG1 THR G 92 2.07 REMARK 500 O6 DG E 14 NZ LYS H 103 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU C 45 NH1 ARG H 126 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 2 O3' DA A 2 C3' -0.045 REMARK 500 DA E 2 O3' DA E 2 C3' -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O3' - P - OP2 ANGL. DEV. = -31.2 DEGREES REMARK 500 DA A 2 O3' - P - OP1 ANGL. DEV. = -23.2 DEGREES REMARK 500 DA A 2 OP1 - P - OP2 ANGL. DEV. = 12.1 DEGREES REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA E 2 O3' - P - OP2 ANGL. DEV. = -21.7 DEGREES REMARK 500 DA E 2 O3' - P - OP1 ANGL. DEV. = -28.5 DEGREES REMARK 500 DA E 2 OP1 - P - OP2 ANGL. DEV. = 11.7 DEGREES REMARK 500 DC E 18 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA F 15 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 GLN H 60 CB - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 85 -68.48 -96.82 REMARK 500 LEU C 116 34.52 -86.26 REMARK 500 ARG D 64 -42.62 -138.89 REMARK 500 ILE D 85 -49.76 -130.83 REMARK 500 ASP D 89 78.78 -161.72 REMARK 500 ASP G 61 4.87 -68.55 REMARK 500 ASP G 117 25.74 -140.60 REMARK 500 ASP H 61 126.30 -172.16 REMARK 500 PHE H 81 115.39 -161.27 REMARK 500 ASP H 120 80.05 54.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 8JKN A 1 19 PDB 8JKN 8JKN 1 19 DBREF 8JKN B 1 19 PDB 8JKN 8JKN 1 19 DBREF 8JKN C 20 135 UNP F2Z3D5 F2Z3D5_HUMAN 20 135 DBREF 8JKN D 20 135 UNP F2Z3D5 F2Z3D5_HUMAN 20 135 DBREF 8JKN E 1 19 PDB 8JKN 8JKN 1 19 DBREF 8JKN F 1 19 PDB 8JKN 8JKN 1 19 DBREF 8JKN G 20 135 UNP F2Z3D5 F2Z3D5_HUMAN 20 135 DBREF 8JKN H 20 135 UNP F2Z3D5 F2Z3D5_HUMAN 20 135 SEQADV 8JKN ARG C 95 UNP F2Z3D5 THR 95 ENGINEERED MUTATION SEQADV 8JKN ARG D 95 UNP F2Z3D5 THR 95 ENGINEERED MUTATION SEQADV 8JKN ARG G 95 UNP F2Z3D5 THR 95 ENGINEERED MUTATION SEQADV 8JKN ARG H 95 UNP F2Z3D5 THR 95 ENGINEERED MUTATION SEQRES 1 A 19 DC DA DA DC DT DG DA DA DA DC DC DG DA SEQRES 2 A 19 DG DA DA DA DC DC SEQRES 1 B 19 DG DG DT DT DT DC DT DC DG DG DT DT DT SEQRES 2 B 19 DC DA DG DT DT DG SEQRES 1 C 116 GLY ASN GLY LYS LEU ARG GLN TRP LEU ILE ASP GLN ILE SEQRES 2 C 116 ASP SER GLY LYS TYR PRO GLY LEU VAL TRP GLU ASN GLU SEQRES 3 C 116 GLU LYS SER ILE PHE ARG ILE PRO TRP LYS HIS ALA GLY SEQRES 4 C 116 LYS GLN ASP TYR ASN ARG GLU GLU ASP ALA ALA LEU PHE SEQRES 5 C 116 LYS ALA TRP ALA LEU PHE LYS GLY LYS PHE ARG GLU GLY SEQRES 6 C 116 ILE ASP LYS PRO ASP PRO PRO THR TRP LYS ARG ARG LEU SEQRES 7 C 116 ARG CYS ALA LEU ASN LYS SER ASN ASP PHE GLU GLU LEU SEQRES 8 C 116 VAL GLU ARG SER GLN LEU ASP ILE SER ASP PRO TYR LYS SEQRES 9 C 116 VAL TYR ARG ILE VAL PRO GLU GLY ALA LYS LYS GLY SEQRES 1 D 116 GLY ASN GLY LYS LEU ARG GLN TRP LEU ILE ASP GLN ILE SEQRES 2 D 116 ASP SER GLY LYS TYR PRO GLY LEU VAL TRP GLU ASN GLU SEQRES 3 D 116 GLU LYS SER ILE PHE ARG ILE PRO TRP LYS HIS ALA GLY SEQRES 4 D 116 LYS GLN ASP TYR ASN ARG GLU GLU ASP ALA ALA LEU PHE SEQRES 5 D 116 LYS ALA TRP ALA LEU PHE LYS GLY LYS PHE ARG GLU GLY SEQRES 6 D 116 ILE ASP LYS PRO ASP PRO PRO THR TRP LYS ARG ARG LEU SEQRES 7 D 116 ARG CYS ALA LEU ASN LYS SER ASN ASP PHE GLU GLU LEU SEQRES 8 D 116 VAL GLU ARG SER GLN LEU ASP ILE SER ASP PRO TYR LYS SEQRES 9 D 116 VAL TYR ARG ILE VAL PRO GLU GLY ALA LYS LYS GLY SEQRES 1 E 19 DC DA DA DC DT DG DA DA DA DC DC DG DA SEQRES 2 E 19 DG DA DA DA DC DC SEQRES 1 F 19 DG DG DT DT DT DC DT DC DG DG DT DT DT SEQRES 2 F 19 DC DA DG DT DT DG SEQRES 1 G 116 GLY ASN GLY LYS LEU ARG GLN TRP LEU ILE ASP GLN ILE SEQRES 2 G 116 ASP SER GLY LYS TYR PRO GLY LEU VAL TRP GLU ASN GLU SEQRES 3 G 116 GLU LYS SER ILE PHE ARG ILE PRO TRP LYS HIS ALA GLY SEQRES 4 G 116 LYS GLN ASP TYR ASN ARG GLU GLU ASP ALA ALA LEU PHE SEQRES 5 G 116 LYS ALA TRP ALA LEU PHE LYS GLY LYS PHE ARG GLU GLY SEQRES 6 G 116 ILE ASP LYS PRO ASP PRO PRO THR TRP LYS ARG ARG LEU SEQRES 7 G 116 ARG CYS ALA LEU ASN LYS SER ASN ASP PHE GLU GLU LEU SEQRES 8 G 116 VAL GLU ARG SER GLN LEU ASP ILE SER ASP PRO TYR LYS SEQRES 9 G 116 VAL TYR ARG ILE VAL PRO GLU GLY ALA LYS LYS GLY SEQRES 1 H 116 GLY ASN GLY LYS LEU ARG GLN TRP LEU ILE ASP GLN ILE SEQRES 2 H 116 ASP SER GLY LYS TYR PRO GLY LEU VAL TRP GLU ASN GLU SEQRES 3 H 116 GLU LYS SER ILE PHE ARG ILE PRO TRP LYS HIS ALA GLY SEQRES 4 H 116 LYS GLN ASP TYR ASN ARG GLU GLU ASP ALA ALA LEU PHE SEQRES 5 H 116 LYS ALA TRP ALA LEU PHE LYS GLY LYS PHE ARG GLU GLY SEQRES 6 H 116 ILE ASP LYS PRO ASP PRO PRO THR TRP LYS ARG ARG LEU SEQRES 7 H 116 ARG CYS ALA LEU ASN LYS SER ASN ASP PHE GLU GLU LEU SEQRES 8 H 116 VAL GLU ARG SER GLN LEU ASP ILE SER ASP PRO TYR LYS SEQRES 9 H 116 VAL TYR ARG ILE VAL PRO GLU GLY ALA LYS LYS GLY FORMUL 9 HOH *4(H2 O) HELIX 1 AA1 LYS C 23 GLY C 35 1 13 HELIX 2 AA2 ASN C 63 LYS C 78 1 16 HELIX 3 AA3 ASP C 89 SER C 104 1 16 HELIX 4 AA4 LYS D 23 GLY D 35 1 13 HELIX 5 AA5 ALA D 68 LYS D 78 1 11 HELIX 6 AA6 ASP D 89 SER D 104 1 16 HELIX 7 AA7 LYS G 23 GLY G 35 1 13 HELIX 8 AA8 ASN G 63 ALA G 68 1 6 HELIX 9 AA9 ALA G 68 LYS G 78 1 11 HELIX 10 AB1 ASP G 89 SER G 104 1 16 HELIX 11 AB2 VAL G 111 SER G 114 5 4 HELIX 12 AB3 LYS H 23 GLY H 35 1 13 HELIX 13 AB4 ASP H 67 LYS H 78 1 12 HELIX 14 AB5 ASP H 89 SER H 104 1 16 SHEET 1 AA1 4 VAL C 41 TRP C 42 0 SHEET 2 AA1 4 ILE C 49 PRO C 53 -1 O ARG C 51 N VAL C 41 SHEET 3 AA1 4 TYR C 122 ILE C 127 -1 O TYR C 125 N PHE C 50 SHEET 4 AA1 4 PHE C 107 GLU C 109 -1 N GLU C 108 O ARG C 126 SHEET 1 AA2 4 VAL D 41 TRP D 42 0 SHEET 2 AA2 4 ILE D 49 PRO D 53 -1 O ARG D 51 N VAL D 41 SHEET 3 AA2 4 TYR D 122 ILE D 127 -1 O TYR D 125 N PHE D 50 SHEET 4 AA2 4 PHE D 107 GLU D 109 -1 N GLU D 108 O ARG D 126 SHEET 1 AA3 4 VAL G 41 TRP G 42 0 SHEET 2 AA3 4 ILE G 49 PRO G 53 -1 O ARG G 51 N VAL G 41 SHEET 3 AA3 4 TYR G 122 ILE G 127 -1 O LYS G 123 N ILE G 52 SHEET 4 AA3 4 PHE G 107 GLU G 109 -1 N GLU G 108 O ARG G 126 SHEET 1 AA4 4 VAL H 41 TRP H 42 0 SHEET 2 AA4 4 ILE H 49 PRO H 53 -1 O ARG H 51 N VAL H 41 SHEET 3 AA4 4 TYR H 122 ILE H 127 -1 O TYR H 125 N PHE H 50 SHEET 4 AA4 4 PHE H 107 GLU H 109 -1 N GLU H 108 O ARG H 126 CRYST1 118.642 118.642 154.647 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008429 0.004866 0.000000 0.00000 SCALE2 0.000000 0.009733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006466 0.00000