HEADER TRANSPORT PROTEIN 02-JUN-23 8JLI TITLE CRYO-EM STRUCTURE OF SV2A DIMER IN COMPLEX LEVETIRACETAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTIC VESICLE GLYCOPROTEIN 2A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SV2A, KIAA0736, PSEC0174; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS SYNAPTIC VESICLE, EPILEPSY, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.YAMAGATA REVDAT 2 08-MAY-24 8JLI 1 JRNL REVDAT 1 01-MAY-24 8JLI 0 JRNL AUTH A.YAMAGATA,K.ITO,T.SUZUKI,N.DOHMAE,T.TERADA,M.SHIROUZU JRNL TITL STRUCTURAL BASIS FOR ANTIEPILEPTIC DRUGS AND BOTULINUM JRNL TITL 2 NEUROTOXIN RECOGNITION OF SV2A. JRNL REF NAT COMMUN V. 15 3027 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38637505 JRNL DOI 10.1038/S41467-024-47322-4 REMARK 2 REMARK 2 RESOLUTION. 3.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, COOT, REFMAC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.380 REMARK 3 NUMBER OF PARTICLES : 424198 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8JLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038186. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SV2A DIMER IN COMPLEX WITH ANTI REMARK 245 -EPILEPTIC DRUG, LEVETIRACETAM REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10001 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5020.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ASP A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 LYS A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 PHE A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 PHE A 11 REMARK 465 ILE A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 LYS A 16 REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 HIS A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 VAL A 30 REMARK 465 VAL A 31 REMARK 465 LYS A 32 REMARK 465 GLY A 33 REMARK 465 LEU A 34 REMARK 465 ASP A 35 REMARK 465 ARG A 36 REMARK 465 VAL A 37 REMARK 465 GLN A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 TYR A 41 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 SER A 45 REMARK 465 TYR A 46 REMARK 465 SER A 47 REMARK 465 ARG A 48 REMARK 465 PHE A 49 REMARK 465 GLU A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 ASP A 53 REMARK 465 ASP A 54 REMARK 465 ASP A 55 REMARK 465 ASP A 56 REMARK 465 ASP A 57 REMARK 465 PHE A 58 REMARK 465 PRO A 59 REMARK 465 ALA A 60 REMARK 465 PRO A 61 REMARK 465 SER A 62 REMARK 465 ASP A 63 REMARK 465 GLY A 64 REMARK 465 TYR A 65 REMARK 465 TYR A 66 REMARK 465 ARG A 67 REMARK 465 GLY A 68 REMARK 465 GLU A 69 REMARK 465 GLY A 70 REMARK 465 THR A 71 REMARK 465 GLN A 72 REMARK 465 ASP A 73 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 GLU A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 SER A 80 REMARK 465 SER A 81 REMARK 465 ASP A 82 REMARK 465 ALA A 83 REMARK 465 THR A 84 REMARK 465 GLU A 85 REMARK 465 GLY A 86 REMARK 465 HIS A 87 REMARK 465 ASP A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 ASP A 91 REMARK 465 GLU A 92 REMARK 465 ILE A 93 REMARK 465 TYR A 94 REMARK 465 GLU A 95 REMARK 465 GLY A 96 REMARK 465 GLU A 97 REMARK 465 TYR A 98 REMARK 465 GLN A 99 REMARK 465 GLY A 100 REMARK 465 ILE A 101 REMARK 465 PRO A 102 REMARK 465 ARG A 103 REMARK 465 ALA A 104 REMARK 465 GLU A 105 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 LYS A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 ARG A 112 REMARK 465 MET A 113 REMARK 465 ALA A 114 REMARK 465 ASP A 115 REMARK 465 GLY A 116 REMARK 465 ALA A 117 REMARK 465 PRO A 118 REMARK 465 LEU A 119 REMARK 465 ALA A 120 REMARK 465 GLY A 121 REMARK 465 VAL A 122 REMARK 465 ARG A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 LEU A 126 REMARK 465 SER A 127 REMARK 465 ASP A 128 REMARK 465 GLY A 129 REMARK 465 GLU A 130 REMARK 465 GLY A 131 REMARK 465 PRO A 132 REMARK 465 PRO A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 ARG A 136 REMARK 465 HIS A 401 REMARK 465 GLN A 402 REMARK 465 GLU A 403 REMARK 465 ASP A 404 REMARK 465 GLU A 405 REMARK 465 LEU A 406 REMARK 465 ILE A 407 REMARK 465 GLU A 408 REMARK 465 ILE A 409 REMARK 465 GLN A 410 REMARK 465 SER A 411 REMARK 465 ASP A 412 REMARK 465 THR A 413 REMARK 465 GLY A 414 REMARK 465 THR A 415 REMARK 465 TRP A 416 REMARK 465 TYR A 417 REMARK 465 GLN A 418 REMARK 465 ARG A 419 REMARK 465 TRP A 420 REMARK 465 MET B -7 REMARK 465 ASP B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 ASP B 0 REMARK 465 LYS B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 4 REMARK 465 PHE B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 PHE B 11 REMARK 465 ILE B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ASP B 17 REMARK 465 ILE B 18 REMARK 465 ALA B 19 REMARK 465 LYS B 20 REMARK 465 GLU B 21 REMARK 465 VAL B 22 REMARK 465 LYS B 23 REMARK 465 LYS B 24 REMARK 465 HIS B 25 REMARK 465 ALA B 26 REMARK 465 ALA B 27 REMARK 465 LYS B 28 REMARK 465 LYS B 29 REMARK 465 VAL B 30 REMARK 465 VAL B 31 REMARK 465 LYS B 32 REMARK 465 GLY B 33 REMARK 465 LEU B 34 REMARK 465 ASP B 35 REMARK 465 ARG B 36 REMARK 465 VAL B 37 REMARK 465 GLN B 38 REMARK 465 ASP B 39 REMARK 465 GLU B 40 REMARK 465 TYR B 41 REMARK 465 SER B 42 REMARK 465 ARG B 43 REMARK 465 ARG B 44 REMARK 465 SER B 45 REMARK 465 TYR B 46 REMARK 465 SER B 47 REMARK 465 ARG B 48 REMARK 465 PHE B 49 REMARK 465 GLU B 50 REMARK 465 GLU B 51 REMARK 465 GLU B 52 REMARK 465 ASP B 53 REMARK 465 ASP B 54 REMARK 465 ASP B 55 REMARK 465 ASP B 56 REMARK 465 ASP B 57 REMARK 465 PHE B 58 REMARK 465 PRO B 59 REMARK 465 ALA B 60 REMARK 465 PRO B 61 REMARK 465 SER B 62 REMARK 465 ASP B 63 REMARK 465 GLY B 64 REMARK 465 TYR B 65 REMARK 465 TYR B 66 REMARK 465 ARG B 67 REMARK 465 GLY B 68 REMARK 465 GLU B 69 REMARK 465 GLY B 70 REMARK 465 THR B 71 REMARK 465 GLN B 72 REMARK 465 ASP B 73 REMARK 465 GLU B 74 REMARK 465 GLU B 75 REMARK 465 GLU B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 ALA B 79 REMARK 465 SER B 80 REMARK 465 SER B 81 REMARK 465 ASP B 82 REMARK 465 ALA B 83 REMARK 465 THR B 84 REMARK 465 GLU B 85 REMARK 465 GLY B 86 REMARK 465 HIS B 87 REMARK 465 ASP B 88 REMARK 465 GLU B 89 REMARK 465 ASP B 90 REMARK 465 ASP B 91 REMARK 465 GLU B 92 REMARK 465 ILE B 93 REMARK 465 TYR B 94 REMARK 465 GLU B 95 REMARK 465 GLY B 96 REMARK 465 GLU B 97 REMARK 465 TYR B 98 REMARK 465 GLN B 99 REMARK 465 GLY B 100 REMARK 465 ILE B 101 REMARK 465 PRO B 102 REMARK 465 ARG B 103 REMARK 465 ALA B 104 REMARK 465 GLU B 105 REMARK 465 SER B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 108 REMARK 465 LYS B 109 REMARK 465 GLY B 110 REMARK 465 GLU B 111 REMARK 465 ARG B 112 REMARK 465 MET B 113 REMARK 465 ALA B 114 REMARK 465 ASP B 115 REMARK 465 GLY B 116 REMARK 465 ALA B 117 REMARK 465 PRO B 118 REMARK 465 LEU B 119 REMARK 465 ALA B 120 REMARK 465 GLY B 121 REMARK 465 VAL B 122 REMARK 465 ARG B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 LEU B 126 REMARK 465 SER B 127 REMARK 465 ASP B 128 REMARK 465 GLY B 129 REMARK 465 GLU B 130 REMARK 465 GLY B 131 REMARK 465 PRO B 132 REMARK 465 PRO B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 ARG B 136 REMARK 465 HIS B 401 REMARK 465 GLN B 402 REMARK 465 GLU B 403 REMARK 465 ASP B 404 REMARK 465 GLU B 405 REMARK 465 LEU B 406 REMARK 465 ILE B 407 REMARK 465 GLU B 408 REMARK 465 ILE B 409 REMARK 465 GLN B 410 REMARK 465 SER B 411 REMARK 465 ASP B 412 REMARK 465 THR B 413 REMARK 465 GLY B 414 REMARK 465 THR B 415 REMARK 465 TRP B 416 REMARK 465 TYR B 417 REMARK 465 GLN B 418 REMARK 465 ARG B 419 REMARK 465 TRP B 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 144 CD1 ILE B 400 2.02 REMARK 500 OD2 ASP A 227 OG1 THR A 683 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 387 C PRO B 388 N -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 439 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 GLY A 589 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 HIS B 387 CA - C - O ANGL. DEV. = 16.1 DEGREES REMARK 500 HIS B 387 CA - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO B 388 C - N - CA ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO B 388 CA - N - CD ANGL. DEV. = 12.6 DEGREES REMARK 500 PRO B 388 N - CA - CB ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 287 -73.40 -56.21 REMARK 500 LYS A 288 65.09 -105.18 REMARK 500 MET A 298 -19.53 -49.98 REMARK 500 ILE A 314 -54.02 -120.56 REMARK 500 HIS A 331 -169.19 -100.01 REMARK 500 PRO A 388 48.40 -84.17 REMARK 500 THR A 588 -134.58 59.55 REMARK 500 ASN A 646 -4.77 -141.04 REMARK 500 ILE A 710 -63.24 -93.06 REMARK 500 GLU B 287 -72.53 -58.33 REMARK 500 LYS B 288 65.23 -103.54 REMARK 500 ILE B 314 -54.25 -120.70 REMARK 500 PRO B 388 51.65 -65.42 REMARK 500 PHE B 439 55.67 -94.16 REMARK 500 ARG B 444 -47.21 -140.30 REMARK 500 THR B 588 -173.28 62.59 REMARK 500 ASN B 646 -3.31 -142.04 REMARK 500 ILE B 710 -62.96 -92.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36398 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF SV2A DIMER IN COMPLEX LEVETIRACETAM DBREF 8JLI A 2 742 UNP Q7L0J3 SV2A_HUMAN 2 742 DBREF 8JLI B 2 742 UNP Q7L0J3 SV2A_HUMAN 2 742 SEQADV 8JLI MET A -7 UNP Q7L0J3 INITIATING METHIONINE SEQADV 8JLI ASP A -6 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI TYR A -5 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI LYS A -4 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP A -3 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP A -2 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP A -1 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP A 0 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI LYS A 1 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI MET B -7 UNP Q7L0J3 INITIATING METHIONINE SEQADV 8JLI ASP B -6 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI TYR B -5 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI LYS B -4 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP B -3 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP B -2 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP B -1 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI ASP B 0 UNP Q7L0J3 EXPRESSION TAG SEQADV 8JLI LYS B 1 UNP Q7L0J3 EXPRESSION TAG SEQRES 1 A 750 MET ASP TYR LYS ASP ASP ASP ASP LYS GLU GLU GLY PHE SEQRES 2 A 750 ARG ASP ARG ALA ALA PHE ILE ARG GLY ALA LYS ASP ILE SEQRES 3 A 750 ALA LYS GLU VAL LYS LYS HIS ALA ALA LYS LYS VAL VAL SEQRES 4 A 750 LYS GLY LEU ASP ARG VAL GLN ASP GLU TYR SER ARG ARG SEQRES 5 A 750 SER TYR SER ARG PHE GLU GLU GLU ASP ASP ASP ASP ASP SEQRES 6 A 750 PHE PRO ALA PRO SER ASP GLY TYR TYR ARG GLY GLU GLY SEQRES 7 A 750 THR GLN ASP GLU GLU GLU GLY GLY ALA SER SER ASP ALA SEQRES 8 A 750 THR GLU GLY HIS ASP GLU ASP ASP GLU ILE TYR GLU GLY SEQRES 9 A 750 GLU TYR GLN GLY ILE PRO ARG ALA GLU SER GLY GLY LYS SEQRES 10 A 750 GLY GLU ARG MET ALA ASP GLY ALA PRO LEU ALA GLY VAL SEQRES 11 A 750 ARG GLY GLY LEU SER ASP GLY GLU GLY PRO PRO GLY GLY SEQRES 12 A 750 ARG GLY GLU ALA GLN ARG ARG LYS GLU ARG GLU GLU LEU SEQRES 13 A 750 ALA GLN GLN TYR GLU ALA ILE LEU ARG GLU CYS GLY HIS SEQRES 14 A 750 GLY ARG PHE GLN TRP THR LEU TYR PHE VAL LEU GLY LEU SEQRES 15 A 750 ALA LEU MET ALA ASP GLY VAL GLU VAL PHE VAL VAL GLY SEQRES 16 A 750 PHE VAL LEU PRO SER ALA GLU LYS ASP MET CYS LEU SER SEQRES 17 A 750 ASP SER ASN LYS GLY MET LEU GLY LEU ILE VAL TYR LEU SEQRES 18 A 750 GLY MET MET VAL GLY ALA PHE LEU TRP GLY GLY LEU ALA SEQRES 19 A 750 ASP ARG LEU GLY ARG ARG GLN CYS LEU LEU ILE SER LEU SEQRES 20 A 750 SER VAL ASN SER VAL PHE ALA PHE PHE SER SER PHE VAL SEQRES 21 A 750 GLN GLY TYR GLY THR PHE LEU PHE CYS ARG LEU LEU SER SEQRES 22 A 750 GLY VAL GLY ILE GLY GLY SER ILE PRO ILE VAL PHE SER SEQRES 23 A 750 TYR PHE SER GLU PHE LEU ALA GLN GLU LYS ARG GLY GLU SEQRES 24 A 750 HIS LEU SER TRP LEU CYS MET PHE TRP MET ILE GLY GLY SEQRES 25 A 750 VAL TYR ALA ALA ALA MET ALA TRP ALA ILE ILE PRO HIS SEQRES 26 A 750 TYR GLY TRP SER PHE GLN MET GLY SER ALA TYR GLN PHE SEQRES 27 A 750 HIS SER TRP ARG VAL PHE VAL LEU VAL CYS ALA PHE PRO SEQRES 28 A 750 SER VAL PHE ALA ILE GLY ALA LEU THR THR GLN PRO GLU SEQRES 29 A 750 SER PRO ARG PHE PHE LEU GLU ASN GLY LYS HIS ASP GLU SEQRES 30 A 750 ALA TRP MET VAL LEU LYS GLN VAL HIS ASP THR ASN MET SEQRES 31 A 750 ARG ALA LYS GLY HIS PRO GLU ARG VAL PHE SER VAL THR SEQRES 32 A 750 HIS ILE LYS THR ILE HIS GLN GLU ASP GLU LEU ILE GLU SEQRES 33 A 750 ILE GLN SER ASP THR GLY THR TRP TYR GLN ARG TRP GLY SEQRES 34 A 750 VAL ARG ALA LEU SER LEU GLY GLY GLN VAL TRP GLY ASN SEQRES 35 A 750 PHE LEU SER CYS PHE GLY PRO GLU TYR ARG ARG ILE THR SEQRES 36 A 750 LEU MET MET MET GLY VAL TRP PHE THR MET SER PHE SER SEQRES 37 A 750 TYR TYR GLY LEU THR VAL TRP PHE PRO ASP MET ILE ARG SEQRES 38 A 750 HIS LEU GLN ALA VAL ASP TYR ALA SER ARG THR LYS VAL SEQRES 39 A 750 PHE PRO GLY GLU ARG VAL GLU HIS VAL THR PHE ASN PHE SEQRES 40 A 750 THR LEU GLU ASN GLN ILE HIS ARG GLY GLY GLN TYR PHE SEQRES 41 A 750 ASN ASP LYS PHE ILE GLY LEU ARG LEU LYS SER VAL SER SEQRES 42 A 750 PHE GLU ASP SER LEU PHE GLU GLU CYS TYR PHE GLU ASP SEQRES 43 A 750 VAL THR SER SER ASN THR PHE PHE ARG ASN CYS THR PHE SEQRES 44 A 750 ILE ASN THR VAL PHE TYR ASN THR ASP LEU PHE GLU TYR SEQRES 45 A 750 LYS PHE VAL ASN SER ARG LEU ILE ASN SER THR PHE LEU SEQRES 46 A 750 HIS ASN LYS GLU GLY CYS PRO LEU ASP VAL THR GLY THR SEQRES 47 A 750 GLY GLU GLY ALA TYR MET VAL TYR PHE VAL SER PHE LEU SEQRES 48 A 750 GLY THR LEU ALA VAL LEU PRO GLY ASN ILE VAL SER ALA SEQRES 49 A 750 LEU LEU MET ASP LYS ILE GLY ARG LEU ARG MET LEU ALA SEQRES 50 A 750 GLY SER SER VAL MET SER CYS VAL SER CYS PHE PHE LEU SEQRES 51 A 750 SER PHE GLY ASN SER GLU SER ALA MET ILE ALA LEU LEU SEQRES 52 A 750 CYS LEU PHE GLY GLY VAL SER ILE ALA SER TRP ASN ALA SEQRES 53 A 750 LEU ASP VAL LEU THR VAL GLU LEU TYR PRO SER ASP LYS SEQRES 54 A 750 ARG THR THR ALA PHE GLY PHE LEU ASN ALA LEU CYS LYS SEQRES 55 A 750 LEU ALA ALA VAL LEU GLY ILE SER ILE PHE THR SER PHE SEQRES 56 A 750 VAL GLY ILE THR LYS ALA ALA PRO ILE LEU PHE ALA SER SEQRES 57 A 750 ALA ALA LEU ALA LEU GLY SER SER LEU ALA LEU LYS LEU SEQRES 58 A 750 PRO GLU THR ARG GLY GLN VAL LEU GLN SEQRES 1 B 750 MET ASP TYR LYS ASP ASP ASP ASP LYS GLU GLU GLY PHE SEQRES 2 B 750 ARG ASP ARG ALA ALA PHE ILE ARG GLY ALA LYS ASP ILE SEQRES 3 B 750 ALA LYS GLU VAL LYS LYS HIS ALA ALA LYS LYS VAL VAL SEQRES 4 B 750 LYS GLY LEU ASP ARG VAL GLN ASP GLU TYR SER ARG ARG SEQRES 5 B 750 SER TYR SER ARG PHE GLU GLU GLU ASP ASP ASP ASP ASP SEQRES 6 B 750 PHE PRO ALA PRO SER ASP GLY TYR TYR ARG GLY GLU GLY SEQRES 7 B 750 THR GLN ASP GLU GLU GLU GLY GLY ALA SER SER ASP ALA SEQRES 8 B 750 THR GLU GLY HIS ASP GLU ASP ASP GLU ILE TYR GLU GLY SEQRES 9 B 750 GLU TYR GLN GLY ILE PRO ARG ALA GLU SER GLY GLY LYS SEQRES 10 B 750 GLY GLU ARG MET ALA ASP GLY ALA PRO LEU ALA GLY VAL SEQRES 11 B 750 ARG GLY GLY LEU SER ASP GLY GLU GLY PRO PRO GLY GLY SEQRES 12 B 750 ARG GLY GLU ALA GLN ARG ARG LYS GLU ARG GLU GLU LEU SEQRES 13 B 750 ALA GLN GLN TYR GLU ALA ILE LEU ARG GLU CYS GLY HIS SEQRES 14 B 750 GLY ARG PHE GLN TRP THR LEU TYR PHE VAL LEU GLY LEU SEQRES 15 B 750 ALA LEU MET ALA ASP GLY VAL GLU VAL PHE VAL VAL GLY SEQRES 16 B 750 PHE VAL LEU PRO SER ALA GLU LYS ASP MET CYS LEU SER SEQRES 17 B 750 ASP SER ASN LYS GLY MET LEU GLY LEU ILE VAL TYR LEU SEQRES 18 B 750 GLY MET MET VAL GLY ALA PHE LEU TRP GLY GLY LEU ALA SEQRES 19 B 750 ASP ARG LEU GLY ARG ARG GLN CYS LEU LEU ILE SER LEU SEQRES 20 B 750 SER VAL ASN SER VAL PHE ALA PHE PHE SER SER PHE VAL SEQRES 21 B 750 GLN GLY TYR GLY THR PHE LEU PHE CYS ARG LEU LEU SER SEQRES 22 B 750 GLY VAL GLY ILE GLY GLY SER ILE PRO ILE VAL PHE SER SEQRES 23 B 750 TYR PHE SER GLU PHE LEU ALA GLN GLU LYS ARG GLY GLU SEQRES 24 B 750 HIS LEU SER TRP LEU CYS MET PHE TRP MET ILE GLY GLY SEQRES 25 B 750 VAL TYR ALA ALA ALA MET ALA TRP ALA ILE ILE PRO HIS SEQRES 26 B 750 TYR GLY TRP SER PHE GLN MET GLY SER ALA TYR GLN PHE SEQRES 27 B 750 HIS SER TRP ARG VAL PHE VAL LEU VAL CYS ALA PHE PRO SEQRES 28 B 750 SER VAL PHE ALA ILE GLY ALA LEU THR THR GLN PRO GLU SEQRES 29 B 750 SER PRO ARG PHE PHE LEU GLU ASN GLY LYS HIS ASP GLU SEQRES 30 B 750 ALA TRP MET VAL LEU LYS GLN VAL HIS ASP THR ASN MET SEQRES 31 B 750 ARG ALA LYS GLY HIS PRO GLU ARG VAL PHE SER VAL THR SEQRES 32 B 750 HIS ILE LYS THR ILE HIS GLN GLU ASP GLU LEU ILE GLU SEQRES 33 B 750 ILE GLN SER ASP THR GLY THR TRP TYR GLN ARG TRP GLY SEQRES 34 B 750 VAL ARG ALA LEU SER LEU GLY GLY GLN VAL TRP GLY ASN SEQRES 35 B 750 PHE LEU SER CYS PHE GLY PRO GLU TYR ARG ARG ILE THR SEQRES 36 B 750 LEU MET MET MET GLY VAL TRP PHE THR MET SER PHE SER SEQRES 37 B 750 TYR TYR GLY LEU THR VAL TRP PHE PRO ASP MET ILE ARG SEQRES 38 B 750 HIS LEU GLN ALA VAL ASP TYR ALA SER ARG THR LYS VAL SEQRES 39 B 750 PHE PRO GLY GLU ARG VAL GLU HIS VAL THR PHE ASN PHE SEQRES 40 B 750 THR LEU GLU ASN GLN ILE HIS ARG GLY GLY GLN TYR PHE SEQRES 41 B 750 ASN ASP LYS PHE ILE GLY LEU ARG LEU LYS SER VAL SER SEQRES 42 B 750 PHE GLU ASP SER LEU PHE GLU GLU CYS TYR PHE GLU ASP SEQRES 43 B 750 VAL THR SER SER ASN THR PHE PHE ARG ASN CYS THR PHE SEQRES 44 B 750 ILE ASN THR VAL PHE TYR ASN THR ASP LEU PHE GLU TYR SEQRES 45 B 750 LYS PHE VAL ASN SER ARG LEU ILE ASN SER THR PHE LEU SEQRES 46 B 750 HIS ASN LYS GLU GLY CYS PRO LEU ASP VAL THR GLY THR SEQRES 47 B 750 GLY GLU GLY ALA TYR MET VAL TYR PHE VAL SER PHE LEU SEQRES 48 B 750 GLY THR LEU ALA VAL LEU PRO GLY ASN ILE VAL SER ALA SEQRES 49 B 750 LEU LEU MET ASP LYS ILE GLY ARG LEU ARG MET LEU ALA SEQRES 50 B 750 GLY SER SER VAL MET SER CYS VAL SER CYS PHE PHE LEU SEQRES 51 B 750 SER PHE GLY ASN SER GLU SER ALA MET ILE ALA LEU LEU SEQRES 52 B 750 CYS LEU PHE GLY GLY VAL SER ILE ALA SER TRP ASN ALA SEQRES 53 B 750 LEU ASP VAL LEU THR VAL GLU LEU TYR PRO SER ASP LYS SEQRES 54 B 750 ARG THR THR ALA PHE GLY PHE LEU ASN ALA LEU CYS LYS SEQRES 55 B 750 LEU ALA ALA VAL LEU GLY ILE SER ILE PHE THR SER PHE SEQRES 56 B 750 VAL GLY ILE THR LYS ALA ALA PRO ILE LEU PHE ALA SER SEQRES 57 B 750 ALA ALA LEU ALA LEU GLY SER SER LEU ALA LEU LYS LEU SEQRES 58 B 750 PRO GLU THR ARG GLY GLN VAL LEU GLN HET UKX A 801 12 HET UKX B 801 12 HETNAM UKX (2S)-2-(2-OXIDANYLIDENEPYRROLIDIN-1-YL)BUTANAMIDE HETSYN UKX LEVETIRACETAM FORMUL 3 UKX 2(C8 H14 N2 O2) HELIX 1 AA1 GLY A 137 GLY A 160 1 24 HELIX 2 AA2 GLY A 162 VAL A 183 1 22 HELIX 3 AA3 PHE A 184 CYS A 198 1 15 HELIX 4 AA4 GLY A 205 GLY A 230 1 26 HELIX 5 AA5 GLY A 230 VAL A 252 1 23 HELIX 6 AA6 TYR A 255 GLY A 271 1 17 HELIX 7 AA7 GLY A 271 SER A 281 1 11 HELIX 8 AA8 GLU A 282 LEU A 284 5 3 HELIX 9 AA9 LYS A 288 TRP A 295 1 8 HELIX 10 AB1 CYS A 297 ILE A 315 1 19 HELIX 11 AB2 HIS A 331 THR A 352 1 22 HELIX 12 AB3 SER A 357 ASN A 364 1 8 HELIX 13 AB4 HIS A 367 GLY A 386 1 20 HELIX 14 AB5 VAL A 422 PHE A 439 1 18 HELIX 15 AB6 ARG A 444 SER A 482 1 39 HELIX 16 AB7 PHE A 562 TYR A 564 5 3 HELIX 17 AB8 GLU A 592 GLY A 623 1 32 HELIX 18 AB9 GLY A 623 LEU A 642 1 20 HELIX 19 AC1 SER A 647 LEU A 676 1 30 HELIX 20 AC2 LYS A 681 THR A 705 1 25 HELIX 21 AC3 LYS A 712 LEU A 731 1 20 HELIX 22 AC4 GLU B 138 GLY B 160 1 23 HELIX 23 AC5 GLY B 162 VAL B 183 1 22 HELIX 24 AC6 PHE B 184 CYS B 198 1 15 HELIX 25 AC7 GLY B 208 GLY B 230 1 23 HELIX 26 AC8 GLY B 230 VAL B 252 1 23 HELIX 27 AC9 TYR B 255 GLY B 271 1 17 HELIX 28 AD1 GLY B 271 SER B 281 1 11 HELIX 29 AD2 GLU B 282 LEU B 284 5 3 HELIX 30 AD3 LYS B 288 TRP B 295 1 8 HELIX 31 AD4 CYS B 297 ILE B 315 1 19 HELIX 32 AD5 HIS B 331 THR B 352 1 22 HELIX 33 AD6 SER B 357 ASN B 364 1 8 HELIX 34 AD7 HIS B 367 GLY B 386 1 20 HELIX 35 AD8 VAL B 422 PHE B 439 1 18 HELIX 36 AD9 ARG B 444 ARG B 483 1 40 HELIX 37 AE1 PHE B 562 TYR B 564 5 3 HELIX 38 AE2 GLU B 592 GLY B 623 1 32 HELIX 39 AE3 GLY B 623 LEU B 642 1 20 HELIX 40 AE4 SER B 643 GLY B 645 5 3 HELIX 41 AE5 SER B 647 LEU B 676 1 30 HELIX 42 AE6 LYS B 681 THR B 705 1 25 HELIX 43 AE7 LYS B 712 LEU B 731 1 20 SHEET 1 AA1 2 PHE A 322 GLN A 323 0 SHEET 2 AA1 2 GLN A 329 PHE A 330 -1 O PHE A 330 N PHE A 322 SHEET 1 AA2 5 LYS A 485 THR A 496 0 SHEET 2 AA2 5 THR A 500 GLU A 527 1 O ARG A 507 N GLY A 489 SHEET 3 AA2 5 LEU A 530 GLU A 532 1 O LEU A 530 N TYR A 511 SHEET 4 AA2 5 THR A 550 ILE A 552 1 O THR A 550 N PHE A 531 SHEET 5 AA2 5 ARG A 570 ILE A 572 1 O ARG A 570 N PHE A 551 SHEET 1 AA3 6 PHE A 566 VAL A 567 0 SHEET 2 AA3 6 PHE A 545 ARG A 547 1 N PHE A 546 O VAL A 567 SHEET 3 AA3 6 THR A 500 GLU A 527 1 N PHE A 526 O ARG A 547 SHEET 4 AA3 6 TYR A 535 SER A 542 1 O TYR A 535 N PHE A 516 SHEET 5 AA3 6 VAL A 555 THR A 559 1 O VAL A 555 N PHE A 536 SHEET 6 AA3 6 THR A 575 LEU A 577 1 O THR A 575 N PHE A 556 SHEET 1 AA4 2 PHE B 322 GLN B 323 0 SHEET 2 AA4 2 GLN B 329 PHE B 330 -1 O PHE B 330 N PHE B 322 SHEET 1 AA5 5 LYS B 485 THR B 496 0 SHEET 2 AA5 5 THR B 500 GLU B 527 1 O ARG B 507 N GLY B 489 SHEET 3 AA5 5 LEU B 530 GLU B 532 1 O LEU B 530 N TYR B 511 SHEET 4 AA5 5 THR B 550 ILE B 552 1 O THR B 550 N PHE B 531 SHEET 5 AA5 5 ARG B 570 ILE B 572 1 O ARG B 570 N PHE B 551 SHEET 1 AA6 6 PHE B 566 VAL B 567 0 SHEET 2 AA6 6 PHE B 545 ARG B 547 1 N PHE B 546 O VAL B 567 SHEET 3 AA6 6 THR B 500 GLU B 527 1 N PHE B 526 O ARG B 547 SHEET 4 AA6 6 TYR B 535 SER B 542 1 O TYR B 535 N PHE B 516 SHEET 5 AA6 6 VAL B 555 THR B 559 1 O VAL B 555 N PHE B 536 SHEET 6 AA6 6 THR B 575 LEU B 577 1 O THR B 575 N PHE B 556 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000