HEADER TRANSPORT PROTEIN 06-JUN-23 8JNU TITLE CRYSTAL STRUCTURE OF V30G MUTATED HUMAN TRANSTHYRETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORT OF THYROID HORMONE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MIZUGUCHI,S.YAMADA,T.OBITA REVDAT 2 01-MAY-24 8JNU 1 JRNL REVDAT 1 17-APR-24 8JNU 0 JRNL AUTH M.MIZUGUCHI,T.OBITA,S.YAMADA,Y.NABESHIMA JRNL TITL TRYPSIN-INDUCED AGGREGATION OF TRANSTHYRETIN VALINE 30 JRNL TITL 2 VARIANTS ASSOCIATED WITH HEREDITARY AMYLOIDOSIS. JRNL REF FEBS J. V. 291 1732 2024 JRNL REFN ISSN 1742-464X JRNL PMID 38273457 JRNL DOI 10.1111/FEBS.17070 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6000 - 3.5300 0.97 2921 150 0.1802 0.1739 REMARK 3 2 3.5300 - 2.8100 1.00 2892 143 0.1834 0.2253 REMARK 3 3 2.8100 - 2.4500 1.00 2863 128 0.2030 0.2224 REMARK 3 4 2.4500 - 2.2300 1.00 2816 163 0.1865 0.2414 REMARK 3 5 2.2300 - 2.0700 1.00 2817 157 0.1730 0.1798 REMARK 3 6 2.0700 - 1.9500 1.00 2794 148 0.1728 0.1908 REMARK 3 7 1.9500 - 1.8500 1.00 2805 137 0.1822 0.2374 REMARK 3 8 1.8500 - 1.7700 1.00 2774 172 0.1916 0.2074 REMARK 3 9 1.7700 - 1.7000 1.00 2810 132 0.1989 0.2421 REMARK 3 10 1.7000 - 1.6400 0.99 2770 137 0.2118 0.2566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.135 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.081 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1815 REMARK 3 ANGLE : 0.883 2473 REMARK 3 CHIRALITY : 0.065 280 REMARK 3 PLANARITY : 0.015 314 REMARK 3 DIHEDRAL : 6.002 244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9168 9.6053 -34.3813 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.1691 REMARK 3 T33: 0.1529 T12: -0.0185 REMARK 3 T13: -0.0198 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 9.3606 L22: 5.0453 REMARK 3 L33: 5.7272 L12: 6.3093 REMARK 3 L13: -5.0800 L23: -2.5928 REMARK 3 S TENSOR REMARK 3 S11: -0.4004 S12: 0.6001 S13: -0.1217 REMARK 3 S21: -0.7551 S22: 0.2814 S23: -0.1162 REMARK 3 S31: 0.4719 S32: -0.2081 S33: 0.1535 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4463 18.7025 -29.9778 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.0873 REMARK 3 T33: 0.1548 T12: 0.0258 REMARK 3 T13: -0.0092 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 7.0762 L22: 3.6374 REMARK 3 L33: 2.0129 L12: 3.8979 REMARK 3 L13: -0.3573 L23: -1.5461 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.1275 S13: 0.3909 REMARK 3 S21: -0.1766 S22: 0.0269 S23: -0.0149 REMARK 3 S31: -0.0152 S32: 0.1882 S33: 0.0252 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2070 11.0417 -20.3012 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.1620 REMARK 3 T33: 0.1221 T12: -0.0086 REMARK 3 T13: 0.0215 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 5.2217 L22: 8.2677 REMARK 3 L33: 7.5704 L12: -1.9046 REMARK 3 L13: 1.5736 L23: -1.6508 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -0.0640 S13: 0.2830 REMARK 3 S21: 0.2072 S22: -0.0242 S23: 0.3574 REMARK 3 S31: -0.0047 S32: -0.6292 S33: 0.0090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7522 12.3782 -14.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1258 REMARK 3 T33: 0.0930 T12: -0.0185 REMARK 3 T13: 0.0251 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.8383 L22: 7.1691 REMARK 3 L33: 7.7816 L12: -1.0312 REMARK 3 L13: 2.3735 L23: 0.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: -0.0251 S13: -0.2098 REMARK 3 S21: 0.4566 S22: -0.1200 S23: -0.4385 REMARK 3 S31: -0.2407 S32: -0.0960 S33: -0.0136 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5937 15.3455 -21.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1453 REMARK 3 T33: 0.0670 T12: 0.0052 REMARK 3 T13: -0.0070 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 5.7903 L22: 7.6199 REMARK 3 L33: 7.4921 L12: 6.3791 REMARK 3 L13: -5.5243 L23: -6.3036 REMARK 3 S TENSOR REMARK 3 S11: -0.2501 S12: -0.3346 S13: 0.4701 REMARK 3 S21: -0.0191 S22: 0.2311 S23: 0.2261 REMARK 3 S31: 0.1748 S32: -0.1946 S33: -0.0126 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4380 13.6956 -30.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.2964 REMARK 3 T33: 0.3582 T12: 0.0260 REMARK 3 T13: 0.0863 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 3.5059 L22: 4.7439 REMARK 3 L33: 5.1074 L12: 2.0504 REMARK 3 L13: -2.7956 L23: 1.5714 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.7610 S13: -0.3857 REMARK 3 S21: -0.1946 S22: 0.4970 S23: -1.3161 REMARK 3 S31: -0.2479 S32: 1.1401 S33: -0.4154 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8812 7.0234 -26.3445 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1657 REMARK 3 T33: 0.0846 T12: -0.0277 REMARK 3 T13: -0.0064 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 6.3843 L22: 4.5814 REMARK 3 L33: 5.2145 L12: 4.1002 REMARK 3 L13: -5.8391 L23: -3.7717 REMARK 3 S TENSOR REMARK 3 S11: -0.4477 S12: 0.5480 S13: -0.2476 REMARK 3 S21: -0.3478 S22: 0.2143 S23: -0.2701 REMARK 3 S31: 0.4643 S32: -0.2772 S33: 0.2117 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8372 6.1543 -22.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.1123 REMARK 3 T33: 0.0721 T12: -0.0044 REMARK 3 T13: -0.0191 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 7.9465 L22: 2.6337 REMARK 3 L33: 8.9288 L12: 0.2798 REMARK 3 L13: -7.5541 L23: -0.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: 0.0495 S13: -0.1959 REMARK 3 S21: -0.2517 S22: -0.0931 S23: -0.1792 REMARK 3 S31: -0.0180 S32: 0.0692 S33: 0.1135 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7523 7.9144 -1.8957 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.2213 REMARK 3 T33: 0.1548 T12: -0.0108 REMARK 3 T13: 0.0362 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 9.1948 L22: 8.1657 REMARK 3 L33: 7.1858 L12: -8.0215 REMARK 3 L13: -7.3973 L23: 7.5113 REMARK 3 S TENSOR REMARK 3 S11: -0.6103 S12: -0.8246 S13: -0.4883 REMARK 3 S21: 1.0362 S22: 0.2497 S23: 0.7250 REMARK 3 S31: 0.5098 S32: 0.1988 S33: 0.3366 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0549 2.6915 -5.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.1534 REMARK 3 T33: 0.1492 T12: 0.0237 REMARK 3 T13: -0.0503 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8538 L22: 6.2433 REMARK 3 L33: 8.8340 L12: -0.4779 REMARK 3 L13: -1.0919 L23: 6.5897 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.3086 S13: 0.0310 REMARK 3 S21: 0.3725 S22: 0.1133 S23: -0.6617 REMARK 3 S31: 0.1149 S32: 0.4116 S33: -0.0702 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6883 25.0736 -8.2235 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1515 REMARK 3 T33: 0.2963 T12: 0.0006 REMARK 3 T13: 0.0517 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 8.6794 L22: 5.3661 REMARK 3 L33: 6.1387 L12: -5.4922 REMARK 3 L13: 1.4195 L23: -1.5689 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.1683 S13: 0.9416 REMARK 3 S21: 0.0362 S22: -0.0263 S23: -0.3010 REMARK 3 S31: -0.6733 S32: -0.4406 S33: 0.0323 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5433 22.3222 -3.7742 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.1930 REMARK 3 T33: 0.1977 T12: -0.0227 REMARK 3 T13: 0.0017 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 7.1709 L22: 8.5337 REMARK 3 L33: 3.9307 L12: -3.0306 REMARK 3 L13: 3.5282 L23: -2.7362 REMARK 3 S TENSOR REMARK 3 S11: -0.3751 S12: -0.1869 S13: 0.7567 REMARK 3 S21: 0.2825 S22: 0.2339 S23: -0.1481 REMARK 3 S31: -0.2379 S32: -0.0181 S33: 0.1999 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1908 8.7160 2.2657 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.2664 REMARK 3 T33: 0.1207 T12: 0.0336 REMARK 3 T13: -0.0482 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 7.0241 L22: 6.7383 REMARK 3 L33: 3.4505 L12: -3.5341 REMARK 3 L13: -0.0582 L23: -1.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.4866 S12: -1.1324 S13: -0.0530 REMARK 3 S21: 1.0407 S22: 0.3243 S23: 0.4410 REMARK 3 S31: 0.1686 S32: -0.2960 S33: 0.2066 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3534 19.2491 -2.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.1256 REMARK 3 T33: 0.1612 T12: -0.0315 REMARK 3 T13: 0.0253 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 4.6777 L22: 3.4622 REMARK 3 L33: 1.1376 L12: -2.8310 REMARK 3 L13: 0.6145 L23: 0.5950 REMARK 3 S TENSOR REMARK 3 S11: 0.1733 S12: -0.1915 S13: 0.5668 REMARK 3 S21: 0.1853 S22: 0.0055 S23: 0.0358 REMARK 3 S31: -0.1437 S32: -0.1668 S33: -0.1169 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2247 9.8133 -14.7704 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1046 REMARK 3 T33: 0.0850 T12: -0.0086 REMARK 3 T13: 0.0161 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 8.0151 L22: 7.0288 REMARK 3 L33: 5.1082 L12: -0.9936 REMARK 3 L13: 4.2861 L23: -3.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.1101 S13: 0.0012 REMARK 3 S21: 0.0755 S22: -0.1311 S23: -0.2900 REMARK 3 S31: -0.0979 S32: 0.2073 S33: 0.1133 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0540 15.0403 -6.2877 REMARK 3 T TENSOR REMARK 3 T11: 0.2785 T22: 0.1038 REMARK 3 T33: 0.2015 T12: 0.0050 REMARK 3 T13: 0.0672 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 4.7720 L22: 2.9085 REMARK 3 L33: 8.5754 L12: -2.5309 REMARK 3 L13: -1.7065 L23: 2.7713 REMARK 3 S TENSOR REMARK 3 S11: -0.2079 S12: 0.2393 S13: -0.0787 REMARK 3 S21: 0.3441 S22: -0.1022 S23: 0.3923 REMARK 3 S31: 0.2408 S32: -0.3079 S33: 0.3210 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4760 6.4671 -8.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.1587 T22: 0.1294 REMARK 3 T33: 0.0785 T12: -0.0042 REMARK 3 T13: -0.0187 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.9718 L22: 2.9711 REMARK 3 L33: 0.1763 L12: 0.0494 REMARK 3 L13: 0.6900 L23: 0.4769 REMARK 3 S TENSOR REMARK 3 S11: -0.2474 S12: -0.3373 S13: 0.0587 REMARK 3 S21: 0.3083 S22: 0.0630 S23: 0.1561 REMARK 3 S31: 0.2779 S32: -0.0833 S33: 0.1350 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5355 8.0691 -30.2926 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.2071 REMARK 3 T33: 0.1572 T12: -0.0444 REMARK 3 T13: 0.0273 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.7637 L22: 6.5925 REMARK 3 L33: 6.2453 L12: 5.4186 REMARK 3 L13: -5.4671 L23: -6.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.5190 S12: 0.8948 S13: -0.3266 REMARK 3 S21: -0.5195 S22: 0.2848 S23: -0.4862 REMARK 3 S31: 0.4358 S32: -0.3020 S33: 0.2116 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6010 4.2865 -26.3841 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.1288 REMARK 3 T33: 0.1515 T12: -0.0212 REMARK 3 T13: -0.0427 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.1905 L22: 3.9816 REMARK 3 L33: 8.9963 L12: 1.5893 REMARK 3 L13: -2.0473 L23: -5.8964 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.1051 S13: 0.2090 REMARK 3 S21: -0.0726 S22: 0.0990 S23: 0.5645 REMARK 3 S31: 0.1264 S32: -0.2277 S33: -0.2528 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9775 24.8788 -24.1672 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.1181 REMARK 3 T33: 0.2528 T12: -0.0061 REMARK 3 T13: -0.0349 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.3942 L22: 5.5805 REMARK 3 L33: 4.4593 L12: 0.9989 REMARK 3 L13: -2.4532 L23: -1.7686 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.2518 S13: 0.8204 REMARK 3 S21: 0.3496 S22: -0.0937 S23: -0.2312 REMARK 3 S31: -0.4037 S32: 0.4397 S33: 0.0664 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2907 22.5744 -28.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1013 REMARK 3 T33: 0.1441 T12: 0.0133 REMARK 3 T13: -0.0011 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 4.4967 L22: 8.6171 REMARK 3 L33: 7.2006 L12: 1.2947 REMARK 3 L13: 3.9081 L23: 2.6708 REMARK 3 S TENSOR REMARK 3 S11: -0.3557 S12: 0.0834 S13: 0.6287 REMARK 3 S21: 0.1005 S22: 0.0696 S23: 0.0609 REMARK 3 S31: -0.3773 S32: 0.1859 S33: 0.3012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29770 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 51.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, MGCL2, GLYCEROL, PH 7.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -43.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 340 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 350 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 SER A 100 REMARK 465 GLY A 101 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 MET B -8 REMARK 465 ALA B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 313 O HOH A 348 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 21 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 303 O REMARK 620 2 HOH A 305 O 89.5 REMARK 620 3 HOH A 318 O 94.3 92.3 REMARK 620 4 HOH A 341 O 88.8 86.6 176.6 REMARK 620 5 HOH A 349 O 82.4 170.5 93.2 88.3 REMARK 620 6 HOH A 361 O 174.7 86.4 89.0 87.7 101.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 305 O REMARK 620 2 HOH B 308 O 84.0 REMARK 620 3 HOH B 312 O 173.9 89.9 REMARK 620 4 HOH B 313 O 89.7 171.9 96.3 REMARK 620 5 HOH B 332 O 86.7 86.6 93.1 87.9 REMARK 620 6 HOH B 377 O 83.9 92.0 96.2 92.4 170.7 REMARK 620 N 1 2 3 4 5 DBREF 8JNU A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 8JNU B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 8JNU MET A -8 UNP P02766 INITIATING METHIONINE SEQADV 8JNU ALA A -7 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS A -6 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS A -5 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS A -4 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS A -3 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS A -2 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS A -1 UNP P02766 EXPRESSION TAG SEQADV 8JNU MET A 0 UNP P02766 EXPRESSION TAG SEQADV 8JNU GLY A 30 UNP P02766 VAL 50 VARIANT SEQADV 8JNU MET B -8 UNP P02766 INITIATING METHIONINE SEQADV 8JNU ALA B -7 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS B -6 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS B -5 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS B -4 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS B -3 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS B -2 UNP P02766 EXPRESSION TAG SEQADV 8JNU HIS B -1 UNP P02766 EXPRESSION TAG SEQADV 8JNU MET B 0 UNP P02766 EXPRESSION TAG SEQADV 8JNU GLY B 30 UNP P02766 VAL 50 VARIANT SEQRES 1 A 136 MET ALA HIS HIS HIS HIS HIS HIS MET GLY PRO THR GLY SEQRES 2 A 136 THR GLY GLU SER LYS CYS PRO LEU MET VAL LYS VAL LEU SEQRES 3 A 136 ASP ALA VAL ARG GLY SER PRO ALA ILE ASN VAL ALA GLY SEQRES 4 A 136 HIS VAL PHE ARG LYS ALA ALA ASP ASP THR TRP GLU PRO SEQRES 5 A 136 PHE ALA SER GLY LYS THR SER GLU SER GLY GLU LEU HIS SEQRES 6 A 136 GLY LEU THR THR GLU GLU GLU PHE VAL GLU GLY ILE TYR SEQRES 7 A 136 LYS VAL GLU ILE ASP THR LYS SER TYR TRP LYS ALA LEU SEQRES 8 A 136 GLY ILE SER PRO PHE HIS GLU HIS ALA GLU VAL VAL PHE SEQRES 9 A 136 THR ALA ASN ASP SER GLY PRO ARG ARG TYR THR ILE ALA SEQRES 10 A 136 ALA LEU LEU SER PRO TYR SER TYR SER THR THR ALA VAL SEQRES 11 A 136 VAL THR ASN PRO LYS GLU SEQRES 1 B 136 MET ALA HIS HIS HIS HIS HIS HIS MET GLY PRO THR GLY SEQRES 2 B 136 THR GLY GLU SER LYS CYS PRO LEU MET VAL LYS VAL LEU SEQRES 3 B 136 ASP ALA VAL ARG GLY SER PRO ALA ILE ASN VAL ALA GLY SEQRES 4 B 136 HIS VAL PHE ARG LYS ALA ALA ASP ASP THR TRP GLU PRO SEQRES 5 B 136 PHE ALA SER GLY LYS THR SER GLU SER GLY GLU LEU HIS SEQRES 6 B 136 GLY LEU THR THR GLU GLU GLU PHE VAL GLU GLY ILE TYR SEQRES 7 B 136 LYS VAL GLU ILE ASP THR LYS SER TYR TRP LYS ALA LEU SEQRES 8 B 136 GLY ILE SER PRO PHE HIS GLU HIS ALA GLU VAL VAL PHE SEQRES 9 B 136 THR ALA ASN ASP SER GLY PRO ARG ARG TYR THR ILE ALA SEQRES 10 B 136 ALA LEU LEU SER PRO TYR SER TYR SER THR THR ALA VAL SEQRES 11 B 136 VAL THR ASN PRO LYS GLU HET MG A 201 1 HET MG B 201 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *145(H2 O) HELIX 1 AA1 ASP A 74 GLY A 83 1 10 HELIX 2 AA2 ASP B 74 LEU B 82 1 9 SHEET 1 AA1 8 SER A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 AA1 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 AA1 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA1 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA1 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA1 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 AA2 8 GLU A 54 LEU A 55 0 SHEET 2 AA2 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 AA2 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 AA2 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA2 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA2 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 AA2 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA2 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 AA3 8 TRP A 41 LYS A 48 0 SHEET 2 AA3 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 AA3 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 AA3 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AA3 8 ALA B 91 ALA B 97 -1 O VAL B 94 N GLU A 89 SHEET 6 AA3 8 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 7 AA3 8 ALA B 29 LYS B 35 -1 N LYS B 35 O ILE B 68 SHEET 8 AA3 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 LINK MG MG A 201 O HOH A 303 1555 1555 2.08 LINK MG MG A 201 O HOH A 305 1555 4455 2.11 LINK MG MG A 201 O HOH A 318 1555 1555 2.05 LINK MG MG A 201 O HOH A 341 1555 4455 2.09 LINK MG MG A 201 O HOH A 349 1555 1555 2.23 LINK MG MG A 201 O HOH A 361 1555 4455 2.31 LINK MG MG B 201 O HOH B 305 1555 1555 2.10 LINK MG MG B 201 O HOH B 308 1555 4554 2.04 LINK MG MG B 201 O HOH B 312 1555 4554 2.03 LINK MG MG B 201 O HOH B 313 1555 1555 1.97 LINK MG MG B 201 O HOH B 332 1555 4554 2.02 LINK MG MG B 201 O HOH B 377 1555 4554 2.14 CRYST1 43.100 85.400 64.480 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015509 0.00000