HEADER ISOMERASE 06-JUN-23 8JNV TITLE PFDXR - MN2+ - MAMK89 TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, COMPND 3 APICOPLASTIC; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: 1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE,DOXP COMPND 6 REDUCTOISOMERASE,DXP REDUCTOISOMERASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM HB3; SOURCE 3 ORGANISM_TAXID: 137071; SOURCE 4 GENE: DXR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TAKADA,Y.SAKAMOTO,N.TANAKA REVDAT 1 22-MAY-24 8JNV 0 JRNL AUTH M.A.ABDULLAZIZ,S.TAKADA,B.ILLARIONOV,L.PESSANHA DE CARVALHO, JRNL AUTH 2 Y.SAKAMOTO,S.HOFMANN,T.KNAK,A.L.KIFFE-DELF,F.MAZZONE, JRNL AUTH 3 K.PFEFFER,R.KALSCHEUER,A.BACHER,J.HELD,M.FISCHER,N.TANAKA, JRNL AUTH 4 T.KURZ JRNL TITL REVERSE N -SUBSTITUTED HYDROXAMIC ACID DERIVATIVES OF JRNL TITL 2 FOSMIDOMYCIN TARGET A PREVIOUSLY UNKNOWN SUBPOCKET OF JRNL TITL 3 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXR). JRNL REF ACS INFECT DIS. V. 10 1739 2024 JRNL REFN ESSN 2373-8227 JRNL PMID 38647213 JRNL DOI 10.1021/ACSINFECDIS.4C00100 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 106015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 393 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.481 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6750 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6540 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9114 ; 2.019 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15138 ; 0.560 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 820 ; 5.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ; 2.615 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1282 ;14.795 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1036 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7596 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3286 ; 1.909 ; 1.687 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3286 ; 1.906 ; 1.687 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4104 ; 2.836 ; 3.022 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4105 ; 2.836 ; 3.023 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3464 ; 3.241 ; 2.147 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3465 ; 3.240 ; 2.146 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5011 ; 5.080 ; 3.735 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7927 ; 6.741 ;19.070 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7799 ; 6.646 ;17.530 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6990 -16.2455 13.2221 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0278 REMARK 3 T33: 0.0512 T12: -0.0057 REMARK 3 T13: -0.0075 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.1275 L22: 0.0960 REMARK 3 L33: 0.4118 L12: 0.0528 REMARK 3 L13: 0.0539 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0046 S13: -0.0447 REMARK 3 S21: 0.0229 S22: -0.0162 S23: -0.0105 REMARK 3 S31: 0.0424 S32: -0.0385 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2359 14.8623 39.9055 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.0670 REMARK 3 T33: 0.0139 T12: 0.0003 REMARK 3 T13: -0.0024 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1657 L22: 0.1587 REMARK 3 L33: 0.1776 L12: -0.0191 REMARK 3 L13: 0.1124 L23: 0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.0434 S13: 0.0012 REMARK 3 S21: -0.0166 S22: 0.0223 S23: 0.0030 REMARK 3 S31: -0.0251 S32: 0.0101 S33: -0.0012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 63.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.0, 20%(W/V) REMARK 280 PEG6000, AND 0.2 M CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.51100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 618 O HOH A 698 1.90 REMARK 500 O HOH A 683 O HOH A 797 1.98 REMARK 500 NZ LYS A 393 O HOH A 601 2.02 REMARK 500 O HOH B 845 O HOH B 856 2.07 REMARK 500 O HOH A 815 O HOH A 834 2.09 REMARK 500 O HOH B 609 O HOH B 752 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 116 6.76 -159.26 REMARK 500 SER A 183 -149.60 72.32 REMARK 500 THR A 249 -155.68 -141.28 REMARK 500 SER A 342 170.77 168.64 REMARK 500 LYS A 349 5.28 82.03 REMARK 500 ASP A 359 124.04 -171.26 REMARK 500 SER A 387 -49.43 78.22 REMARK 500 ASN A 413 -138.46 55.45 REMARK 500 LYS B 116 10.63 -152.24 REMARK 500 SER B 183 -148.66 62.90 REMARK 500 THR B 249 -158.58 -153.35 REMARK 500 ASN B 255 6.18 83.74 REMARK 500 HIS B 293 61.47 -118.66 REMARK 500 SER B 342 171.30 174.26 REMARK 500 LYS B 349 5.50 81.78 REMARK 500 ASP B 359 116.40 -172.00 REMARK 500 SER B 387 -48.13 78.92 REMARK 500 ASN B 413 -130.03 54.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 GLU A 233 OE1 93.3 REMARK 620 3 GLU A 233 OE2 144.1 51.9 REMARK 620 4 GLU A 315 OE2 97.2 99.6 97.1 REMARK 620 5 UW0 A 502 O1 113.9 152.2 100.4 83.1 REMARK 620 6 UW0 A 502 O2 89.8 101.2 89.3 157.6 74.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD1 REMARK 620 2 HOH A 651 O 82.7 REMARK 620 3 HOH A 741 O 84.2 72.9 REMARK 620 4 GLN B 239 O 168.2 88.9 101.4 REMARK 620 5 LEU B 241 O 87.7 141.3 143.3 93.7 REMARK 620 6 HOH B 658 O 91.3 68.1 140.9 77.8 74.8 REMARK 620 7 HOH B 761 O 102.5 142.5 70.8 89.2 76.2 147.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 139 O REMARK 620 2 GLU B 143 OE1 73.9 REMARK 620 3 GLU B 143 OE2 124.8 53.1 REMARK 620 4 ASN B 452 OD1 42.8 109.4 140.6 REMARK 620 5 HOH B 654 O 79.0 147.5 156.1 57.2 REMARK 620 6 HOH B 795 O 87.2 80.8 97.3 115.6 80.3 REMARK 620 7 HOH B 830 O 84.1 102.3 92.5 53.9 92.3 169.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD1 REMARK 620 2 GLU B 233 OE1 93.9 REMARK 620 3 GLU B 315 OE2 95.5 100.9 REMARK 620 4 UW0 B 502 O2 91.7 99.5 157.9 REMARK 620 5 UW0 B 502 O1 115.7 149.3 85.0 73.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 329 OD2 REMARK 620 2 HOH B 608 O 79.7 REMARK 620 3 HOH B 679 O 72.2 128.9 REMARK 620 4 HOH B 722 O 96.4 69.3 72.5 REMARK 620 5 HOH B 759 O 76.5 73.6 135.3 143.0 REMARK 620 6 HOH B 769 O 87.5 154.8 65.4 134.2 82.4 REMARK 620 7 HOH B 859 O 144.8 125.0 72.6 74.0 130.8 76.9 REMARK 620 8 HOH B 866 O 147.7 90.1 134.3 108.6 71.1 89.3 64.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8JNW RELATED DB: PDB DBREF 8JNV A 76 486 UNP O96693 DXR_PLAFX 76 486 DBREF 8JNV B 76 486 UNP O96693 DXR_PLAFX 76 486 SEQRES 1 A 411 LYS PRO ILE ASN VAL ALA ILE PHE GLY SER THR GLY SER SEQRES 2 A 411 ILE GLY THR ASN ALA LEU ASN ILE ILE ARG GLU CYS ASN SEQRES 3 A 411 LYS ILE GLU ASN VAL PHE ASN VAL LYS ALA LEU TYR VAL SEQRES 4 A 411 ASN LYS SER VAL ASN GLU LEU TYR GLU GLN ALA ARG GLU SEQRES 5 A 411 PHE LEU PRO GLU TYR LEU CYS ILE HIS ASP LYS SER VAL SEQRES 6 A 411 TYR GLU GLU LEU LYS GLU LEU VAL LYS ASN ILE LYS ASP SEQRES 7 A 411 TYR LYS PRO ILE ILE LEU CYS GLY ASP GLU GLY MET LYS SEQRES 8 A 411 GLU ILE CYS SER SER ASN SER ILE ASP LYS ILE VAL ILE SEQRES 9 A 411 GLY ILE ASP SER PHE GLN GLY LEU TYR SER THR MET TYR SEQRES 10 A 411 ALA ILE MET ASN ASN LYS ILE VAL ALA LEU ALA ASN LYS SEQRES 11 A 411 GLU SER ILE VAL SER ALA GLY PHE PHE LEU LYS LYS LEU SEQRES 12 A 411 LEU ASN ILE HIS LYS ASN ALA LYS ILE ILE PRO VAL ASP SEQRES 13 A 411 SER GLU HIS SER ALA ILE PHE GLN CYS LEU ASP ASN ASN SEQRES 14 A 411 LYS VAL LEU LYS THR LYS CYS LEU GLN ASP ASN PHE SER SEQRES 15 A 411 LYS ILE ASN ASN ILE ASN LYS ILE PHE LEU CYS SER SER SEQRES 16 A 411 GLY GLY PRO PHE GLN ASN LEU THR MET ASP GLU LEU LYS SEQRES 17 A 411 ASN VAL THR SER GLU ASN ALA LEU LYS HIS PRO LYS TRP SEQRES 18 A 411 LYS MET GLY LYS LYS ILE THR ILE ASP SER ALA THR MET SEQRES 19 A 411 MET ASN LYS GLY LEU GLU VAL ILE GLU THR HIS PHE LEU SEQRES 20 A 411 PHE ASP VAL ASP TYR ASN ASP ILE GLU VAL ILE VAL HIS SEQRES 21 A 411 LYS GLU CYS ILE ILE HIS SER CYS VAL GLU PHE ILE ASP SEQRES 22 A 411 LYS SER VAL ILE SER GLN MET TYR TYR PRO ASP MET GLN SEQRES 23 A 411 ILE PRO ILE LEU TYR SER LEU THR TRP PRO ASP ARG ILE SEQRES 24 A 411 LYS THR ASN LEU LYS PRO LEU ASP LEU ALA GLN VAL SER SEQRES 25 A 411 THR LEU THR PHE HIS LYS PRO SER LEU GLU HIS PHE PRO SEQRES 26 A 411 CYS ILE LYS LEU ALA TYR GLN ALA GLY ILE LYS GLY ASN SEQRES 27 A 411 PHE TYR PRO THR VAL LEU ASN ALA SER ASN GLU ILE ALA SEQRES 28 A 411 ASN ASN LEU PHE LEU ASN ASN LYS ILE LYS TYR PHE ASP SEQRES 29 A 411 ILE SER SER ILE ILE SER GLN VAL LEU GLU SER PHE ASN SEQRES 30 A 411 SER GLN LYS VAL SER GLU ASN SER GLU ASP LEU MET LYS SEQRES 31 A 411 GLN ILE LEU GLN ILE HIS SER TRP ALA LYS ASP LYS ALA SEQRES 32 A 411 THR ASP ILE TYR ASN LYS HIS ASN SEQRES 1 B 411 LYS PRO ILE ASN VAL ALA ILE PHE GLY SER THR GLY SER SEQRES 2 B 411 ILE GLY THR ASN ALA LEU ASN ILE ILE ARG GLU CYS ASN SEQRES 3 B 411 LYS ILE GLU ASN VAL PHE ASN VAL LYS ALA LEU TYR VAL SEQRES 4 B 411 ASN LYS SER VAL ASN GLU LEU TYR GLU GLN ALA ARG GLU SEQRES 5 B 411 PHE LEU PRO GLU TYR LEU CYS ILE HIS ASP LYS SER VAL SEQRES 6 B 411 TYR GLU GLU LEU LYS GLU LEU VAL LYS ASN ILE LYS ASP SEQRES 7 B 411 TYR LYS PRO ILE ILE LEU CYS GLY ASP GLU GLY MET LYS SEQRES 8 B 411 GLU ILE CYS SER SER ASN SER ILE ASP LYS ILE VAL ILE SEQRES 9 B 411 GLY ILE ASP SER PHE GLN GLY LEU TYR SER THR MET TYR SEQRES 10 B 411 ALA ILE MET ASN ASN LYS ILE VAL ALA LEU ALA ASN LYS SEQRES 11 B 411 GLU SER ILE VAL SER ALA GLY PHE PHE LEU LYS LYS LEU SEQRES 12 B 411 LEU ASN ILE HIS LYS ASN ALA LYS ILE ILE PRO VAL ASP SEQRES 13 B 411 SER GLU HIS SER ALA ILE PHE GLN CYS LEU ASP ASN ASN SEQRES 14 B 411 LYS VAL LEU LYS THR LYS CYS LEU GLN ASP ASN PHE SER SEQRES 15 B 411 LYS ILE ASN ASN ILE ASN LYS ILE PHE LEU CYS SER SER SEQRES 16 B 411 GLY GLY PRO PHE GLN ASN LEU THR MET ASP GLU LEU LYS SEQRES 17 B 411 ASN VAL THR SER GLU ASN ALA LEU LYS HIS PRO LYS TRP SEQRES 18 B 411 LYS MET GLY LYS LYS ILE THR ILE ASP SER ALA THR MET SEQRES 19 B 411 MET ASN LYS GLY LEU GLU VAL ILE GLU THR HIS PHE LEU SEQRES 20 B 411 PHE ASP VAL ASP TYR ASN ASP ILE GLU VAL ILE VAL HIS SEQRES 21 B 411 LYS GLU CYS ILE ILE HIS SER CYS VAL GLU PHE ILE ASP SEQRES 22 B 411 LYS SER VAL ILE SER GLN MET TYR TYR PRO ASP MET GLN SEQRES 23 B 411 ILE PRO ILE LEU TYR SER LEU THR TRP PRO ASP ARG ILE SEQRES 24 B 411 LYS THR ASN LEU LYS PRO LEU ASP LEU ALA GLN VAL SER SEQRES 25 B 411 THR LEU THR PHE HIS LYS PRO SER LEU GLU HIS PHE PRO SEQRES 26 B 411 CYS ILE LYS LEU ALA TYR GLN ALA GLY ILE LYS GLY ASN SEQRES 27 B 411 PHE TYR PRO THR VAL LEU ASN ALA SER ASN GLU ILE ALA SEQRES 28 B 411 ASN ASN LEU PHE LEU ASN ASN LYS ILE LYS TYR PHE ASP SEQRES 29 B 411 ILE SER SER ILE ILE SER GLN VAL LEU GLU SER PHE ASN SEQRES 30 B 411 SER GLN LYS VAL SER GLU ASN SER GLU ASP LEU MET LYS SEQRES 31 B 411 GLN ILE LEU GLN ILE HIS SER TRP ALA LYS ASP LYS ALA SEQRES 32 B 411 THR ASP ILE TYR ASN LYS HIS ASN HET MN A 501 1 HET UW0 A 502 26 HET MN B 501 1 HET UW0 B 502 26 HET CA B 503 1 HET CA B 504 1 HET CA B 505 1 HETNAM MN MANGANESE (II) ION HETNAM UW0 [(1~{S})-4-OXIDANYLIDENE-4-[OXIDANYL(3-PHENYLPROPYL) HETNAM 2 UW0 AMINO]-1-PHENYL-BUTYL]PHOSPHONIC ACID HETNAM CA CALCIUM ION FORMUL 3 MN 2(MN 2+) FORMUL 4 UW0 2(C19 H24 N O5 P) FORMUL 7 CA 3(CA 2+) FORMUL 10 HOH *534(H2 O) HELIX 1 AA1 GLY A 87 GLU A 104 1 18 HELIX 2 AA2 SER A 117 LEU A 129 1 13 HELIX 3 AA3 ASP A 137 SER A 139 5 3 HELIX 4 AA4 VAL A 140 LYS A 149 1 10 HELIX 5 AA5 GLY A 161 SER A 171 1 11 HELIX 6 AA6 ASP A 182 ASN A 196 1 15 HELIX 7 AA7 ASN A 204 HIS A 222 1 19 HELIX 8 AA8 ASP A 231 CYS A 240 1 10 HELIX 9 AA9 ASP A 242 LEU A 247 1 6 HELIX 10 AB1 ASN A 255 ASN A 260 1 6 HELIX 11 AB2 THR A 278 VAL A 285 1 8 HELIX 12 AB3 THR A 286 HIS A 293 1 8 HELIX 13 AB4 GLY A 299 MET A 309 1 11 HELIX 14 AB5 MET A 309 ASP A 324 1 16 HELIX 15 AB6 ASP A 326 ASN A 328 5 3 HELIX 16 AB7 MET A 360 TRP A 370 1 11 HELIX 17 AB8 ASP A 382 SER A 387 1 6 HELIX 18 AB9 PHE A 399 GLY A 412 1 14 HELIX 19 AC1 PHE A 414 ASN A 432 1 19 HELIX 20 AC2 LYS A 436 PHE A 451 1 16 HELIX 21 AC3 ASN A 459 ASN A 486 1 28 HELIX 22 AC4 GLY B 87 ASN B 101 1 15 HELIX 23 AC5 SER B 117 LEU B 129 1 13 HELIX 24 AC6 ASP B 137 SER B 139 5 3 HELIX 25 AC7 VAL B 140 LYS B 149 1 10 HELIX 26 AC8 GLY B 161 SER B 171 1 11 HELIX 27 AC9 ASP B 182 ASN B 196 1 15 HELIX 28 AD1 ASN B 204 HIS B 222 1 19 HELIX 29 AD2 ASP B 231 LEU B 241 1 11 HELIX 30 AD3 ASP B 242 LEU B 247 1 6 HELIX 31 AD4 ASN B 255 ASN B 260 1 6 HELIX 32 AD5 THR B 278 LYS B 283 1 6 HELIX 33 AD6 THR B 286 HIS B 293 1 8 HELIX 34 AD7 GLY B 299 MET B 309 1 11 HELIX 35 AD8 MET B 309 ASP B 324 1 16 HELIX 36 AD9 ASP B 326 ASN B 328 5 3 HELIX 37 AE1 MET B 360 TRP B 370 1 11 HELIX 38 AE2 ASP B 382 SER B 387 1 6 HELIX 39 AE3 PHE B 399 GLY B 412 1 14 HELIX 40 AE4 PHE B 414 ASN B 432 1 19 HELIX 41 AE5 LYS B 436 PHE B 451 1 16 HELIX 42 AE6 ASN B 459 HIS B 485 1 27 SHEET 1 AA1 7 ILE A 157 CYS A 160 0 SHEET 2 AA1 7 TYR A 132 ILE A 135 1 N LEU A 133 O LEU A 159 SHEET 3 AA1 7 PHE A 107 VAL A 114 1 N LEU A 112 O CYS A 134 SHEET 4 AA1 7 ILE A 78 PHE A 83 1 N ILE A 78 O ASN A 108 SHEET 5 AA1 7 LYS A 176 ILE A 179 1 O VAL A 178 N PHE A 83 SHEET 6 AA1 7 ILE A 199 LEU A 202 1 O ALA A 201 N ILE A 179 SHEET 7 AA1 7 LYS A 226 PRO A 229 1 O LYS A 226 N VAL A 200 SHEET 1 AA2 8 ILE A 330 VAL A 334 0 SHEET 2 AA2 8 ILE A 262 SER A 269 1 N ILE A 265 O GLU A 331 SHEET 3 AA2 8 ILE A 340 PHE A 346 -1 O GLU A 345 N LYS A 264 SHEET 4 AA2 8 VAL A 351 MET A 355 -1 O ILE A 352 N VAL A 344 SHEET 5 AA2 8 VAL B 351 MET B 355 -1 O MET B 355 N VAL A 351 SHEET 6 AA2 8 ILE B 340 PHE B 346 -1 N VAL B 344 O ILE B 352 SHEET 7 AA2 8 ILE B 262 SER B 269 -1 N LYS B 264 O GLU B 345 SHEET 8 AA2 8 ILE B 330 VAL B 334 1 O GLU B 331 N ILE B 265 SHEET 1 AA3 2 THR A 388 THR A 390 0 SHEET 2 AA3 2 THR B 388 THR B 390 -1 O LEU B 389 N LEU A 389 SHEET 1 AA4 7 ILE B 157 CYS B 160 0 SHEET 2 AA4 7 TYR B 132 ILE B 135 1 N LEU B 133 O LEU B 159 SHEET 3 AA4 7 PHE B 107 VAL B 114 1 N LYS B 110 O TYR B 132 SHEET 4 AA4 7 ILE B 78 PHE B 83 1 N VAL B 80 O ASN B 108 SHEET 5 AA4 7 LYS B 176 ILE B 179 1 O VAL B 178 N PHE B 83 SHEET 6 AA4 7 ILE B 199 LEU B 202 1 O ALA B 201 N ILE B 177 SHEET 7 AA4 7 LYS B 226 PRO B 229 1 O LYS B 226 N VAL B 200 LINK OD1 ASP A 231 MN MN A 501 1555 1555 2.17 LINK OE1 GLU A 233 MN MN A 501 1555 1555 2.04 LINK OE2 GLU A 233 MN MN A 501 1555 1555 2.71 LINK OD1 ASP A 242 CA CA B 503 1555 1555 2.38 LINK OE2 GLU A 315 MN MN A 501 1555 1555 2.05 LINK MN MN A 501 O1 UW0 A 502 1555 1555 2.14 LINK MN MN A 501 O2 UW0 A 502 1555 1555 2.09 LINK O HOH A 651 CA CA B 503 1555 1555 2.45 LINK O HOH A 741 CA CA B 503 1555 1555 2.41 LINK O SER B 139 CA CA B 504 1555 1555 2.36 LINK OE1 GLU B 143 CA CA B 504 1555 1555 2.56 LINK OE2 GLU B 143 CA CA B 504 1555 1555 2.38 LINK OD1 ASP B 231 MN MN B 501 1555 1555 2.10 LINK OE1 GLU B 233 MN MN B 501 1555 1555 2.05 LINK O GLN B 239 CA CA B 503 1555 1555 2.28 LINK O LEU B 241 CA CA B 503 1555 1555 2.28 LINK OE2 GLU B 315 MN MN B 501 1555 1555 2.09 LINK OD2 ASP B 329 CA CA B 505 1555 1555 2.31 LINK OD1 ASN B 452 CA CA B 504 1555 2646 2.34 LINK MN MN B 501 O2 UW0 B 502 1555 1555 2.19 LINK MN MN B 501 O1 UW0 B 502 1555 1555 2.21 LINK CA CA B 503 O HOH B 658 1555 1555 2.65 LINK CA CA B 503 O HOH B 761 1555 1555 2.41 LINK CA CA B 504 O HOH B 654 1555 2656 2.28 LINK CA CA B 504 O HOH B 795 1555 2656 2.19 LINK CA CA B 504 O HOH B 830 1555 1555 2.39 LINK CA CA B 505 O HOH B 608 1555 1555 2.63 LINK CA CA B 505 O HOH B 679 1555 1555 2.52 LINK CA CA B 505 O HOH B 722 1555 1555 2.37 LINK CA CA B 505 O HOH B 759 1555 1555 2.36 LINK CA CA B 505 O HOH B 769 1555 1555 2.36 LINK CA CA B 505 O HOH B 859 1555 1555 2.52 LINK CA CA B 505 O HOH B 866 1555 1555 2.41 CISPEP 1 TRP A 370 PRO A 371 0 2.98 CISPEP 2 TRP B 370 PRO B 371 0 8.53 CRYST1 51.637 77.022 111.275 90.00 92.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019366 0.000000 0.000903 0.00000 SCALE2 0.000000 0.012983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008997 0.00000