HEADER OXIDOREDUCTASE 10-JUN-23 8JP1 TITLE CRYSTAL STRUCTURE OF AKR1C3 IN COMPLEX WITH DFV COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5,17-BETA-HSD 5,3- COMPND 5 ALPHA-HSD TYPE II,BRAIN,3-ALPHA-HYDROXYSTEROID DEHYDROGENASE TYPE 2, COMPND 6 3-ALPHA-HSD TYPE 2,CHLORDECONE REDUCTASE HOMOLOG HAKRB,DIHYDRODIOL COMPND 7 DEHYDROGENASE 3,DD-3,DD3,DIHYDRODIOL DEHYDROGENASE TYPE I,HA1753, COMPND 8 PROSTAGLANDIN F SYNTHASE,PGFS,TESTOSTERONE 17-BETA-DEHYDROGENASE 5; COMPND 9 EC: 1.1.1.-,1.1.1.210,1.1.1.53,1.1.1.62,1.1.1.357,1.1.1.188, COMPND 10 1.1.1.239,1.1.1.64; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C3, DDH1, HSD17B5, KIAA0119, PGFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALDO-KETO REDUCTASE 1C3;17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5; KEYWDS 2 COMPLEX;INHIBITOR;FLAVANONE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.H.ZHENG,H.LIU,Z.Q.YAO,L.P.ZHANG REVDAT 1 24-APR-24 8JP1 0 JRNL AUTH H.LIU,Z.YAO,M.SUN,C.ZHANG,Y.Y.HUANG,H.B.LUO,D.WU,X.ZHENG JRNL TITL INHIBITION OF AKR1CS BY LIQUIRITIGENIN AND THE STRUCTURAL JRNL TITL 2 BASIS. JRNL REF CHEM.BIOL.INTERACT. V. 385 10654 2023 JRNL REFN ISSN 0009-2797 JRNL PMID 37666442 JRNL DOI 10.1016/J.CBI.2023.110654 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3283: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 48921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.0899 - 5.1397 0.98 2716 146 0.1881 0.2212 REMARK 3 2 5.1397 - 4.1214 1.00 2703 152 0.1466 0.1818 REMARK 3 3 4.1214 - 3.6129 0.98 2651 155 0.1729 0.2199 REMARK 3 4 3.6129 - 3.2883 0.98 2654 127 0.1890 0.2098 REMARK 3 5 3.2883 - 3.0558 1.00 2703 131 0.1840 0.2124 REMARK 3 6 3.0558 - 2.8777 1.00 2701 153 0.1818 0.2282 REMARK 3 7 2.8777 - 2.7349 1.00 2743 116 0.1904 0.2447 REMARK 3 8 2.7349 - 2.6169 1.00 2717 149 0.1937 0.2502 REMARK 3 9 2.6169 - 2.5169 1.00 2686 146 0.2018 0.2676 REMARK 3 10 2.5169 - 2.4306 1.00 2689 135 0.2031 0.2822 REMARK 3 11 2.4306 - 2.3550 1.00 2690 141 0.2029 0.2585 REMARK 3 12 2.3550 - 2.2881 0.91 2438 127 0.2901 0.3710 REMARK 3 13 2.2881 - 2.2281 0.75 2029 99 0.4106 0.5026 REMARK 3 14 2.2281 - 2.1740 0.66 1788 102 0.4699 0.6435 REMARK 3 15 2.1740 - 2.1248 1.00 2626 155 0.2141 0.2692 REMARK 3 16 2.1248 - 2.0798 0.99 2697 145 0.2140 0.2760 REMARK 3 17 2.0798 - 2.0383 0.98 2599 150 0.1999 0.2548 REMARK 3 18 2.0383 - 2.0000 0.96 2633 129 0.1951 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5211 REMARK 3 ANGLE : 1.056 7095 REMARK 3 CHIRALITY : 0.068 780 REMARK 3 PLANARITY : 0.007 982 REMARK 3 DIHEDRAL : 16.778 1994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 16-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54055 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 13.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.19500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% (W/V) PEG 8000, 100 MM MES AND REMARK 280 0.14 M NACL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.18650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 HIS A 5 REMARK 465 SER A 320 REMARK 465 ASP A 321 REMARK 465 GLU A 322 REMARK 465 TYR A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 HIS B 5 REMARK 465 TYR B 319 REMARK 465 SER B 320 REMARK 465 ASP B 321 REMARK 465 GLU B 322 REMARK 465 TYR B 323 REMARK 465 LEU B 324 REMARK 465 GLU B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 104 CD CE NZ REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 ASN A 134 CG OD1 ND2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ARG A 171 NE CZ NH1 NH2 REMARK 470 LYS A 183 CD CE REMARK 470 LYS A 201 CD CE NZ REMARK 470 LYS A 246 CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 294 CD CE NZ REMARK 470 LYS B 104 CD CE NZ REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ASN B 134 CG OD1 ND2 REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 ARG B 171 NE CZ NH1 NH2 REMARK 470 LYS B 183 CD CE REMARK 470 LYS B 201 CD CE NZ REMARK 470 LYS B 246 CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 LYS B 294 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 119 HD22 ASN A 316 1.17 REMARK 500 HE2 HIS B 117 HO3 DFV B 402 1.20 REMARK 500 HE2 HIS A 117 HO3 DFV A 402 1.26 REMARK 500 H SER B 217 O HOH B 502 1.32 REMARK 500 HZ1 LYS A 33 O HOH A 501 1.34 REMARK 500 HH22 ARG A 66 O HOH A 514 1.48 REMARK 500 HH11 ARG B 301 O HOH B 512 1.49 REMARK 500 HG3 ARG A 223 O HOH A 582 1.53 REMARK 500 HH11 ARG B 170 O HOH B 524 1.54 REMARK 500 HZ1 LYS A 155 O HOH A 534 1.58 REMARK 500 HZ3 LYS B 161 O HOH B 531 1.58 REMARK 500 HH TYR B 110 O HOH B 528 1.60 REMARK 500 OD1 ASP B 132 H LYS B 136 1.60 REMARK 500 O HOH A 636 O HOH A 822 1.64 REMARK 500 O PRO A 119 ND2 ASN A 316 1.73 REMARK 500 O HOH A 514 O HOH A 842 1.78 REMARK 500 O HOH A 938 O HOH A 955 1.81 REMARK 500 O HOH B 529 O HOH B 702 1.85 REMARK 500 O HOH B 916 O HOH B 976 1.85 REMARK 500 O HOH B 671 O HOH B 912 1.88 REMARK 500 O HOH B 638 O HOH B 900 1.88 REMARK 500 O HOH B 521 O HOH B 855 1.90 REMARK 500 NZ LYS A 33 O HOH A 501 1.92 REMARK 500 O HOH B 705 O HOH B 755 1.93 REMARK 500 O HOH A 740 O HOH A 827 1.93 REMARK 500 O HOH B 837 O HOH B 908 1.93 REMARK 500 OD2 ASP B 210 O HOH B 501 1.94 REMARK 500 O HOH B 989 O HOH B 1016 1.95 REMARK 500 N SER B 217 O HOH B 502 1.95 REMARK 500 OH TYR A 24 O HOH A 502 1.95 REMARK 500 O HOH A 723 O HOH A 797 1.95 REMARK 500 OD2 ASP A 210 O HOH A 503 1.95 REMARK 500 OD1 ASP B 238 O HOH B 503 1.96 REMARK 500 O GLU A 133 O HOH A 504 1.96 REMARK 500 O HOH B 852 O HOH B 920 1.98 REMARK 500 C GLU A 133 O HOH A 504 1.98 REMARK 500 O HOH A 962 O HOH A 987 1.98 REMARK 500 O HOH B 505 O HOH B 821 1.99 REMARK 500 O HOH B 549 O HOH B 933 1.99 REMARK 500 O GLU A 133 O HOH A 505 1.99 REMARK 500 O HOH B 715 O HOH B 731 2.00 REMARK 500 O HOH A 582 O HOH A 715 2.00 REMARK 500 O HOH B 915 O HOH B 922 2.01 REMARK 500 OE1 GLU A 59 O HOH A 506 2.01 REMARK 500 O HOH B 514 O HOH B 805 2.01 REMARK 500 O HOH A 526 O HOH A 626 2.03 REMARK 500 O HOH A 867 O HOH A 911 2.04 REMARK 500 O HOH A 760 O HOH A 925 2.04 REMARK 500 OD2 ASP A 210 O HOH A 507 2.05 REMARK 500 O HOH A 561 O HOH A 925 2.06 REMARK 500 REMARK 500 THIS ENTRY HAS 98 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1048 O HOH B 1007 2545 2.05 REMARK 500 O HOH B 656 O HOH B 820 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 58 CD GLU A 58 OE1 -0.076 REMARK 500 GLU A 58 CD GLU A 58 OE2 -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 226 CG - CD - NE ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 197 88.42 -156.80 REMARK 500 SER A 221 166.30 73.93 REMARK 500 ARG A 250 -150.02 -126.27 REMARK 500 PRO A 315 6.57 -64.87 REMARK 500 ASN B 57 26.50 -153.70 REMARK 500 SER B 221 171.31 79.86 REMARK 500 TRP B 227 -1.21 -140.55 REMARK 500 ARG B 250 -149.20 -122.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1014 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1016 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1017 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1018 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1020 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1023 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1024 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1025 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1026 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1027 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1028 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A1029 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A1030 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1034 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1035 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A1036 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A1037 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1038 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1039 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1040 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A1041 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH A1045 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A1046 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH A1047 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH A1048 DISTANCE = 8.88 ANGSTROMS REMARK 525 HOH A1049 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH A1051 DISTANCE = 9.70 ANGSTROMS REMARK 525 HOH A1052 DISTANCE = 9.81 ANGSTROMS REMARK 525 HOH A1053 DISTANCE = 11.43 ANGSTROMS REMARK 525 HOH B1010 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1011 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1012 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1013 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B1014 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1015 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B1016 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1017 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1018 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B1019 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B1020 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B1021 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B1022 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B1023 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B1024 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B1025 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH B1026 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH B1027 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH B1028 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH B1029 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH B1030 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH B1031 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH B1032 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH B1033 DISTANCE = 9.77 ANGSTROMS REMARK 525 HOH B1034 DISTANCE = 9.91 ANGSTROMS REMARK 525 HOH B1035 DISTANCE = 10.33 ANGSTROMS REMARK 525 HOH B1036 DISTANCE = 10.51 ANGSTROMS REMARK 525 HOH B1037 DISTANCE = 10.73 ANGSTROMS REMARK 525 HOH B1038 DISTANCE = 10.79 ANGSTROMS REMARK 525 HOH B1039 DISTANCE = 11.17 ANGSTROMS DBREF 8JP1 A 1 323 UNP P42330 AK1C3_HUMAN 1 323 DBREF 8JP1 B 1 323 UNP P42330 AK1C3_HUMAN 1 323 SEQADV 8JP1 LEU A 324 UNP P42330 EXPRESSION TAG SEQADV 8JP1 GLU A 325 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS A 326 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS A 327 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS A 328 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS A 329 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS A 330 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS A 331 UNP P42330 EXPRESSION TAG SEQADV 8JP1 LEU B 324 UNP P42330 EXPRESSION TAG SEQADV 8JP1 GLU B 325 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS B 326 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS B 327 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS B 328 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS B 329 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS B 330 UNP P42330 EXPRESSION TAG SEQADV 8JP1 HIS B 331 UNP P42330 EXPRESSION TAG SEQRES 1 A 331 MET ASP SER LYS HIS GLN CYS VAL LYS LEU ASN ASP GLY SEQRES 2 A 331 HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR ALA PRO SEQRES 3 A 331 PRO GLU VAL PRO ARG SER LYS ALA LEU GLU VAL THR LYS SEQRES 4 A 331 LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE ASP SER ALA SEQRES 5 A 331 HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU ALA ILE SEQRES 6 A 331 ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG GLU ASP SEQRES 7 A 331 ILE PHE TYR THR SER LYS LEU TRP SER THR PHE HIS ARG SEQRES 8 A 331 PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SER LEU LYS SEQRES 9 A 331 LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR LEU ILE HIS SEQRES 10 A 331 SER PRO MET SER LEU LYS PRO GLY GLU GLU LEU SER PRO SEQRES 11 A 331 THR ASP GLU ASN GLY LYS VAL ILE PHE ASP ILE VAL ASP SEQRES 12 A 331 LEU CYS THR THR TRP GLU ALA MET GLU LYS CYS LYS ASP SEQRES 13 A 331 ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN PHE ASN SEQRES 14 A 331 ARG ARG GLN LEU GLU MET ILE LEU ASN LYS PRO GLY LEU SEQRES 15 A 331 LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS PRO SEQRES 16 A 331 TYR PHE ASN ARG SER LYS LEU LEU ASP PHE CYS LYS SER SEQRES 17 A 331 LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU GLY SER SEQRES 18 A 331 GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SER PRO VAL SEQRES 19 A 331 LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA LYS LYS SEQRES 20 A 331 HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG TYR GLN SEQRES 21 A 331 LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER TYR ASN SEQRES 22 A 331 GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE GLU PHE SEQRES 23 A 331 GLN LEU THR ALA GLU ASP MET LYS ALA ILE ASP GLY LEU SEQRES 24 A 331 ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SER PHE ALA SEQRES 25 A 331 SER HIS PRO ASN TYR PRO TYR SER ASP GLU TYR LEU GLU SEQRES 26 A 331 HIS HIS HIS HIS HIS HIS SEQRES 1 B 331 MET ASP SER LYS HIS GLN CYS VAL LYS LEU ASN ASP GLY SEQRES 2 B 331 HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR ALA PRO SEQRES 3 B 331 PRO GLU VAL PRO ARG SER LYS ALA LEU GLU VAL THR LYS SEQRES 4 B 331 LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE ASP SER ALA SEQRES 5 B 331 HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU ALA ILE SEQRES 6 B 331 ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG GLU ASP SEQRES 7 B 331 ILE PHE TYR THR SER LYS LEU TRP SER THR PHE HIS ARG SEQRES 8 B 331 PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SER LEU LYS SEQRES 9 B 331 LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR LEU ILE HIS SEQRES 10 B 331 SER PRO MET SER LEU LYS PRO GLY GLU GLU LEU SER PRO SEQRES 11 B 331 THR ASP GLU ASN GLY LYS VAL ILE PHE ASP ILE VAL ASP SEQRES 12 B 331 LEU CYS THR THR TRP GLU ALA MET GLU LYS CYS LYS ASP SEQRES 13 B 331 ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN PHE ASN SEQRES 14 B 331 ARG ARG GLN LEU GLU MET ILE LEU ASN LYS PRO GLY LEU SEQRES 15 B 331 LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS PRO SEQRES 16 B 331 TYR PHE ASN ARG SER LYS LEU LEU ASP PHE CYS LYS SER SEQRES 17 B 331 LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU GLY SER SEQRES 18 B 331 GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SER PRO VAL SEQRES 19 B 331 LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA LYS LYS SEQRES 20 B 331 HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG TYR GLN SEQRES 21 B 331 LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER TYR ASN SEQRES 22 B 331 GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE GLU PHE SEQRES 23 B 331 GLN LEU THR ALA GLU ASP MET LYS ALA ILE ASP GLY LEU SEQRES 24 B 331 ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SER PHE ALA SEQRES 25 B 331 SER HIS PRO ASN TYR PRO TYR SER ASP GLU TYR LEU GLU SEQRES 26 B 331 HIS HIS HIS HIS HIS HIS HET NAP A 401 76 HET DFV A 402 31 HET NAP B 401 76 HET DFV B 402 31 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM DFV 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN DFV 5-DEOXYFLAVANONE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 DFV 2(C15 H12 O4) FORMUL 7 HOH *1092(H2 O) HELIX 1 AA1 ARG A 31 GLY A 45 1 15 HELIX 2 AA2 ALA A 52 ASN A 56 5 5 HELIX 3 AA3 ASN A 57 ASP A 71 1 15 HELIX 4 AA4 LYS A 75 ILE A 79 5 5 HELIX 5 AA5 TRP A 86 HIS A 90 5 5 HELIX 6 AA6 ARG A 91 GLU A 93 5 3 HELIX 7 AA7 LEU A 94 GLN A 107 1 14 HELIX 8 AA8 ASP A 143 ALA A 157 1 15 HELIX 9 AA9 ASN A 169 ASN A 178 1 10 HELIX 10 AB1 ARG A 199 LYS A 209 1 11 HELIX 11 AB2 VAL A 234 GLU A 237 5 4 HELIX 12 AB3 ASP A 238 LYS A 249 1 12 HELIX 13 AB4 THR A 251 ARG A 263 1 13 HELIX 14 AB5 ASN A 273 VAL A 281 1 9 HELIX 15 AB6 GLN A 282 PHE A 286 5 5 HELIX 16 AB7 THR A 289 GLY A 298 1 10 HELIX 17 AB8 SER A 308 SER A 313 1 6 HELIX 18 AB9 ARG B 31 GLY B 45 1 15 HELIX 19 AC1 ALA B 52 ASN B 56 5 5 HELIX 20 AC2 ASN B 57 ASP B 71 1 15 HELIX 21 AC3 LYS B 75 ILE B 79 5 5 HELIX 22 AC4 TRP B 86 HIS B 90 5 5 HELIX 23 AC5 ARG B 91 ALA B 106 1 16 HELIX 24 AC6 ASP B 143 ALA B 157 1 15 HELIX 25 AC7 ASN B 169 ASN B 178 1 10 HELIX 26 AC8 ARG B 199 LYS B 209 1 11 HELIX 27 AC9 VAL B 234 GLU B 237 5 4 HELIX 28 AD1 ASP B 238 HIS B 248 1 11 HELIX 29 AD2 THR B 251 ARG B 263 1 13 HELIX 30 AD3 ASN B 273 VAL B 281 1 9 HELIX 31 AD4 GLN B 282 PHE B 286 5 5 HELIX 32 AD5 THR B 289 GLY B 298 1 10 SHEET 1 AA1 2 CYS A 7 LYS A 9 0 SHEET 2 AA1 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 AA2 9 LEU A 19 GLY A 22 0 SHEET 2 AA2 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 AA2 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 AA2 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 AA2 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 AA2 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 AA2 9 VAL A 212 TYR A 216 1 O VAL A 212 N ASN A 189 SHEET 8 AA2 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 AA2 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 AA3 2 CYS B 7 LYS B 9 0 SHEET 2 AA3 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 AA4 9 LEU B 19 GLY B 22 0 SHEET 2 AA4 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 AA4 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 AA4 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 AA4 9 ALA B 160 SER B 166 1 O LYS B 161 N VAL B 111 SHEET 6 AA4 9 CYS B 188 GLU B 192 1 O CYS B 188 N VAL B 165 SHEET 7 AA4 9 VAL B 212 TYR B 216 1 O VAL B 212 N ASN B 189 SHEET 8 AA4 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 AA4 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 CRYST1 48.905 108.373 75.098 90.00 103.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020448 0.000000 0.004787 0.00000 SCALE2 0.000000 0.009227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013676 0.00000