HEADER OXIDOREDUCTASE 13-JUN-23 8JPW TITLE CRYSTAL STRUCTURE OF SINGLE-CHAIN L-GLUTAMATE OXIDASE MUTANT FROM TITLE 2 STREPTOMYCES SP. X-119-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-GLUTAMATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. X-119-6; SOURCE 3 ORGANISM_TAXID: 196112; SOURCE 4 GENE: LGOX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINO ACID OXIDASE, MUTANT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YAMAGUCHI,K.TAKAHASHI,M.TATSUMI,U.TAGAMI,T.MIZUKOSHI,H.MIYANO, AUTHOR 2 M.SUGIKI REVDAT 3 08-MAY-24 8JPW 1 JRNL REVDAT 2 16-AUG-23 8JPW 1 REMARK REVDAT 1 09-AUG-23 8JPW 0 JRNL AUTH H.YAMAGUCHI,K.TAKAHASHI,M.TATSUMI,U.TAGAMI,T.MIZUKOSHI, JRNL AUTH 2 H.MIYANO,M.SUGIKI JRNL TITL DEVELOPMENT OF A NOVEL SINGLE-CHAIN L-GLUTAMATE OXIDASE FROM JRNL TITL 2 STREPTOMYCES SP. X-119-6 BY INSERTING FLEXIBLE LINKERS. JRNL REF ENZYME.MICROB.TECHNOL. V. 170 10287 2023 JRNL REFN ISSN 0141-0229 JRNL PMID 37487431 JRNL DOI 10.1016/J.ENZMICTEC.2023.110287 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.00000 REMARK 3 B22 (A**2) : 15.00000 REMARK 3 B33 (A**2) : -29.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2375 ; 5.003 ; 5.423 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2375 ; 5.000 ; 5.423 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2960 ; 7.197 ; 9.727 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2961 ; 7.196 ; 9.727 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2520 ; 5.298 ; 5.801 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2518 ; 5.292 ; 5.800 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3710 ; 8.010 ;10.456 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5804 ;11.121 ;54.220 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5786 ;11.094 ;54.150 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 49.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE (PH REMARK 280 4.5), 10% PEG3000 AND 0.05 M ZINC ACETATE DIHYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.20000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 69.11750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 79.20000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 69.11750 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.20000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 69.11750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 79.20000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 69.11750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.20000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 69.11750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 79.20000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 69.11750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 79.20000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 69.11750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.20000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.20000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.11750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 171790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -573.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 HIS A 16 REMARK 465 ILE A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 ARG A 325 REMARK 465 SER A 326 REMARK 465 ASP A 327 REMARK 465 ILE A 328 REMARK 465 ASP A 329 REMARK 465 PRO A 330 REMARK 465 ARG A 371A REMARK 465 ASP A 371B REMARK 465 GLY A 371C REMARK 465 HIS A 371D REMARK 465 HIS A 371E REMARK 465 GLY A 371F REMARK 465 GLU A 371G REMARK 465 GLY A 371H REMARK 465 GLY A 371I REMARK 465 GLY A 371J REMARK 465 GLY A 371K REMARK 465 GLU A 395A REMARK 465 PRO A 395B REMARK 465 TYR A 395C REMARK 465 GLY A 395D REMARK 465 GLY A 395E REMARK 465 GLY A 395F REMARK 465 GLY A 395G REMARK 465 SER A 395H REMARK 465 ALA A 395I REMARK 465 ALA A 525 REMARK 465 GLU A 526 REMARK 465 ALA A 527 REMARK 465 ALA A 528 REMARK 465 GLY A 529 REMARK 465 GLY A 530 REMARK 465 VAL A 531 REMARK 465 PRO A 680 REMARK 465 VAL A 681 REMARK 465 GLY A 682 REMARK 465 ASP A 683 REMARK 465 THR A 684 REMARK 465 GLY A 685 REMARK 465 VAL A 686 REMARK 465 THR A 687 REMARK 465 ALA A 688 REMARK 465 ALA A 689 REMARK 465 ALA A 690 REMARK 465 GLY A 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 556 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 574 CG OD1 OD2 REMARK 470 GLU A 586 CG CD OE1 OE2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 42 70.44 -69.04 REMARK 500 THR A 43 -57.58 155.86 REMARK 500 ASP A 180 99.41 89.76 REMARK 500 LEU A 323 -70.73 -71.88 REMARK 500 GLU A 394 -114.22 63.65 REMARK 500 THR A 401 85.89 -158.77 REMARK 500 THR A 424 -72.95 -68.15 REMARK 500 ARG A 549 -60.61 69.35 REMARK 500 SER A 573 -130.37 50.76 REMARK 500 HIS A 632 -13.56 70.68 REMARK 500 LYS A 658 64.77 -113.40 REMARK 500 ALA A 660 8.16 90.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 984 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 GLU A 465 OE2 132.4 REMARK 620 N 1 DBREF 8JPW A 23 691 UNP Q8L3C7 Q8L3C7_9ACTN 15 683 SEQADV 8JPW MET A 1 UNP Q8L3C7 INITIATING METHIONINE SEQADV 8JPW GLY A 2 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 3 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 4 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 5 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 6 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 7 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 8 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 9 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 10 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 11 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 12 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW SER A 13 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW SER A 14 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW GLY A 15 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 16 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW ILE A 17 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW GLU A 18 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW GLY A 19 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW ARG A 20 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW HIS A 21 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW MET A 22 UNP Q8L3C7 EXPRESSION TAG SEQADV 8JPW GLY A 371H UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 371I UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 371J UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 371K UNP Q8L3C7 INSERTION SEQADV 8JPW SER A 378 UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 395D UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 395E UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 395F UNP Q8L3C7 INSERTION SEQADV 8JPW GLY A 395G UNP Q8L3C7 INSERTION SEQADV 8JPW SER A 395H UNP Q8L3C7 INSERTION SEQADV 8JPW A UNP Q8L3C7 LEU 481 DELETION SEQADV 8JPW A UNP Q8L3C7 ALA 482 DELETION SEQADV 8JPW A UNP Q8L3C7 LEU 483 DELETION SEQADV 8JPW A UNP Q8L3C7 PRO 484 DELETION SEQADV 8JPW A UNP Q8L3C7 GLN 485 DELETION SEQADV 8JPW A UNP Q8L3C7 SER 486 DELETION SEQADV 8JPW A UNP Q8L3C7 VAL 487 DELETION SEQADV 8JPW A UNP Q8L3C7 ARG 488 DELETION SEQADV 8JPW A UNP Q8L3C7 ASN 489 DELETION SEQADV 8JPW A UNP Q8L3C7 LEU 490 DELETION SEQADV 8JPW A UNP Q8L3C7 PRO 491 DELETION SEQADV 8JPW A UNP Q8L3C7 THR 492 DELETION SEQADV 8JPW A UNP Q8L3C7 GLY 493 DELETION SEQADV 8JPW A UNP Q8L3C7 LEU 494 DELETION SEQADV 8JPW A UNP Q8L3C7 LEU 495 DELETION SEQADV 8JPW A UNP Q8L3C7 GLY 496 DELETION SEQADV 8JPW A UNP Q8L3C7 ALA 497 DELETION SEQADV 8JPW A UNP Q8L3C7 HIS 498 DELETION SEQADV 8JPW A UNP Q8L3C7 PRO 499 DELETION SEQADV 8JPW A UNP Q8L3C7 SER 500 DELETION SEQADV 8JPW A UNP Q8L3C7 VAL 501 DELETION SEQADV 8JPW A UNP Q8L3C7 ASP 502 DELETION SEQADV 8JPW A UNP Q8L3C7 GLU 503 DELETION SEQADV 8JPW A UNP Q8L3C7 SER 504 DELETION SEQADV 8JPW A UNP Q8L3C7 ARG 505 DELETION SEQADV 8JPW A UNP Q8L3C7 ILE 506 DELETION SEQADV 8JPW A UNP Q8L3C7 GLY 507 DELETION SEQADV 8JPW A UNP Q8L3C7 GLU 508 DELETION SEQADV 8JPW A UNP Q8L3C7 GLU 509 DELETION SEQADV 8JPW A UNP Q8L3C7 GLN 510 DELETION SEQADV 8JPW A UNP Q8L3C7 VAL 511 DELETION SEQADV 8JPW A UNP Q8L3C7 GLU 512 DELETION SEQADV 8JPW A UNP Q8L3C7 TYR 513 DELETION SEQADV 8JPW A UNP Q8L3C7 TYR 514 DELETION SEQADV 8JPW A UNP Q8L3C7 ARG 515 DELETION SEQADV 8JPW A UNP Q8L3C7 ASN 516 DELETION SEQADV 8JPW A UNP Q8L3C7 SER 517 DELETION SEQADV 8JPW A UNP Q8L3C7 GLU 518 DELETION SEQADV 8JPW A UNP Q8L3C7 LEU 519 DELETION SEQADV 8JPW A UNP Q8L3C7 ARG 520 DELETION SEQRES 1 A 661 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 661 SER GLY HIS ILE GLU GLY ARG HIS MET ALA ASN GLU MET SEQRES 3 A 661 THR TYR GLU GLN LEU ALA ARG GLU LEU LEU LEU VAL GLY SEQRES 4 A 661 PRO ALA PRO THR ASN GLU ASP LEU LYS LEU ARG TYR LEU SEQRES 5 A 661 ASP VAL LEU ILE ASP ASN GLY LEU ASN PRO PRO GLY PRO SEQRES 6 A 661 PRO LYS ARG ILE LEU ILE VAL GLY ALA GLY ILE ALA GLY SEQRES 7 A 661 LEU VAL ALA GLY ASP LEU LEU THR ARG ALA GLY HIS ASP SEQRES 8 A 661 VAL THR ILE LEU GLU ALA ASN ALA ASN ARG VAL GLY GLY SEQRES 9 A 661 ARG ILE LYS THR PHE HIS ALA LYS LYS GLY GLU PRO SER SEQRES 10 A 661 PRO PHE ALA ASP PRO ALA GLN TYR ALA GLU ALA GLY ALA SEQRES 11 A 661 MET ARG LEU PRO SER PHE HIS PRO LEU THR LEU ALA LEU SEQRES 12 A 661 ILE ASP LYS LEU GLY LEU LYS ARG ARG LEU PHE PHE ASN SEQRES 13 A 661 VAL ASP ILE ASP PRO GLN THR GLY ASN GLN ASP ALA PRO SEQRES 14 A 661 VAL PRO PRO VAL PHE TYR LYS SER PHE LYS ASP GLY LYS SEQRES 15 A 661 THR TRP THR ASN GLY ALA PRO SER PRO GLU PHE LYS GLU SEQRES 16 A 661 PRO ASP LYS ARG ASN HIS THR TRP ILE ARG THR ASN ARG SEQRES 17 A 661 GLU GLN VAL ARG ARG ALA GLN TYR ALA THR ASP PRO SER SEQRES 18 A 661 SER ILE ASN GLU GLY PHE HIS LEU THR GLY CYS GLU THR SEQRES 19 A 661 ARG LEU THR VAL SER ASP MET VAL ASN GLN ALA LEU GLU SEQRES 20 A 661 PRO VAL ARG ASP TYR TYR SER VAL LYS GLN ASP ASP GLY SEQRES 21 A 661 THR ARG VAL ASN LYS PRO PHE LYS GLU TRP LEU ALA GLY SEQRES 22 A 661 TRP ALA ASP VAL VAL ARG ASP PHE ASP GLY TYR SER MET SEQRES 23 A 661 GLY ARG PHE LEU ARG GLU TYR ALA GLU PHE SER ASP GLU SEQRES 24 A 661 ALA VAL GLU ALA ILE GLY THR ILE GLU ASN MET THR SER SEQRES 25 A 661 ARG LEU HIS LEU ALA PHE PHE HIS SER PHE LEU GLY ARG SEQRES 26 A 661 SER ASP ILE ASP PRO ARG ALA THR TYR TRP GLU ILE GLU SEQRES 27 A 661 GLY GLY SER ARG MET LEU PRO GLU THR LEU ALA LYS ASP SEQRES 28 A 661 LEU ARG ASP GLN ILE VAL MET GLY GLN ARG MET VAL ARG SEQRES 29 A 661 LEU GLU TYR TYR ASP PRO GLY ARG ASP GLY HIS HIS GLY SEQRES 30 A 661 GLU GLY GLY GLY GLY SER LEU THR GLY PRO GLY GLY PRO SEQRES 31 A 661 ALA VAL ALA ILE GLN THR VAL PRO GLU GLY GLU PRO TYR SEQRES 32 A 661 GLY GLY GLY GLY SER ALA ALA THR GLN THR TRP THR GLY SEQRES 33 A 661 ASP LEU ALA ILE VAL THR ILE PRO PHE SER SER LEU ARG SEQRES 34 A 661 PHE VAL LYS VAL THR PRO PRO PHE SER TYR LYS LYS ARG SEQRES 35 A 661 ARG ALA VAL ILE GLU THR HIS TYR ASP GLN ALA THR LYS SEQRES 36 A 661 VAL LEU LEU GLU PHE SER ARG ARG TRP TRP GLU PHE THR SEQRES 37 A 661 GLU ALA ASP TRP LYS ARG GLU LEU ASP ALA ILE ALA PRO SEQRES 38 A 661 GLY LEU TYR ASP TYR TYR GLN GLN TRP GLY GLU ASP ASP SEQRES 39 A 661 ALA GLU ALA ALA GLY GLY VAL ARG PRO ALA THR ASN ALA SEQRES 40 A 661 TYR GLY GLY GLY SER THR THR ASP ASN PRO ASN ARG PHE SEQRES 41 A 661 MET TYR TYR PRO SER HIS PRO VAL PRO GLY THR GLN GLY SEQRES 42 A 661 GLY VAL VAL LEU ALA ALA TYR SER TRP SER ASP ASP ALA SEQRES 43 A 661 ALA ARG TRP ASP SER PHE ASP ASP ALA GLU ARG TYR GLY SEQRES 44 A 661 TYR ALA LEU GLU ASN LEU GLN SER VAL HIS GLY ARG ARG SEQRES 45 A 661 ILE GLU VAL PHE TYR THR GLY ALA GLY GLN THR GLN SER SEQRES 46 A 661 TRP LEU ARG ASP PRO TYR ALA CYS GLY GLU ALA ALA VAL SEQRES 47 A 661 TYR THR PRO HIS GLN MET THR ALA PHE HIS LEU ASP VAL SEQRES 48 A 661 VAL ARG PRO GLU GLY PRO VAL TYR PHE ALA GLY GLU HIS SEQRES 49 A 661 VAL SER LEU LYS HIS ALA TRP ILE GLU GLY ALA VAL GLU SEQRES 50 A 661 THR ALA VAL ARG ALA ALA ILE ALA VAL ASN GLU ALA PRO SEQRES 51 A 661 VAL GLY ASP THR GLY VAL THR ALA ALA ALA GLY HET FAD A 700 53 HET AKG A 701 10 HET ZN A 702 1 HET ZN A 703 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM ZN ZINC ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 AKG C5 H6 O5 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *184(H2 O) HELIX 1 AA1 ALA A 23 LEU A 37 1 15 HELIX 2 AA2 ASP A 46 ASP A 57 1 12 HELIX 3 AA3 GLY A 75 ALA A 88 1 14 HELIX 4 AA4 HIS A 137 LEU A 147 1 11 HELIX 5 AA5 ARG A 213 ASP A 219 1 7 HELIX 6 AA6 PRO A 220 PHE A 227 1 8 HELIX 7 AA7 THR A 237 TYR A 252 1 16 HELIX 8 AA8 PRO A 266 ASP A 282 1 17 HELIX 9 AA9 SER A 285 TYR A 293 1 9 HELIX 10 AB1 SER A 297 GLU A 308 1 12 HELIX 11 AB2 MET A 310 LEU A 314 5 5 HELIX 12 AB3 ALA A 317 GLY A 324 1 8 HELIX 13 AB4 ARG A 342 ASP A 351 1 10 HELIX 14 AB5 PRO A 414 ARG A 419 1 6 HELIX 15 AB6 SER A 428 THR A 438 1 11 HELIX 16 AB7 ARG A 453 PHE A 457 5 5 HELIX 17 AB8 THR A 458 ALA A 468 1 11 HELIX 18 AB9 GLY A 472 GLY A 481 1 10 HELIX 19 AC1 SER A 573 SER A 581 1 9 HELIX 20 AC2 ASP A 583 GLY A 600 1 18 HELIX 21 AC3 ARG A 601 VAL A 605 5 5 HELIX 22 AC4 HIS A 632 ARG A 643 1 12 HELIX 23 AC5 GLY A 652 SER A 656 5 5 HELIX 24 AC6 ILE A 662 GLU A 678 1 17 SHEET 1 AA1 5 ILE A 356 VAL A 357 0 SHEET 2 AA1 5 ASP A 91 LEU A 95 1 N ILE A 94 O VAL A 357 SHEET 3 AA1 5 ARG A 68 VAL A 72 1 N ILE A 71 O LEU A 95 SHEET 4 AA1 5 LEU A 408 VAL A 411 1 O ILE A 410 N VAL A 72 SHEET 5 AA1 5 VAL A 648 PHE A 650 1 O TYR A 649 N ALA A 409 SHEET 1 AA2 2 THR A 108 PHE A 109 0 SHEET 2 AA2 2 ALA A 126 GLU A 127 -1 O ALA A 126 N PHE A 109 SHEET 1 AA3 3 LEU A 133 PRO A 134 0 SHEET 2 AA3 3 TYR A 334 ILE A 337 -1 O TRP A 335 N LEU A 133 SHEET 3 AA3 3 ARG A 151 PHE A 154 -1 N ARG A 152 O GLU A 336 SHEET 1 AA4 2 PHE A 174 LYS A 176 0 SHEET 2 AA4 2 THR A 183 THR A 185 -1 O TRP A 184 N TYR A 175 SHEET 1 AA5 4 GLU A 209 ARG A 212 0 SHEET 2 AA5 4 TRP A 203 THR A 206 -1 N ILE A 204 O VAL A 211 SHEET 3 AA5 4 GLY A 541 THR A 544 1 O THR A 543 N ARG A 205 SHEET 4 AA5 4 PHE A 550 TYR A 552 -1 O MET A 551 N SER A 542 SHEET 1 AA6 2 SER A 254 LYS A 256 0 SHEET 2 AA6 2 ARG A 262 ASN A 264 -1 O VAL A 263 N VAL A 255 SHEET 1 AA7 4 GLN A 402 GLY A 406 0 SHEET 2 AA7 4 VAL A 387 PRO A 393 -1 N ILE A 389 O TRP A 404 SHEET 3 AA7 4 GLN A 360 TYR A 367 -1 N GLU A 366 O ALA A 388 SHEET 4 AA7 4 LYS A 422 VAL A 423 1 O LYS A 422 N VAL A 363 SHEET 1 AA8 2 HIS A 439 TYR A 440 0 SHEET 2 AA8 2 ALA A 627 VAL A 628 -1 O VAL A 628 N HIS A 439 SHEET 1 AA9 3 GLY A 564 TRP A 572 0 SHEET 2 AA9 3 ALA A 443 PHE A 450 -1 N PHE A 450 O GLY A 564 SHEET 3 AA9 3 TYR A 607 SER A 615 -1 O GLN A 612 N LEU A 447 LINK OD1 ASP A 167 ZN ZN A 703 1555 1555 2.24 LINK OE1 GLU A 346 ZN ZN A 702 1555 1555 2.61 LINK OE2 GLU A 465 ZN ZN A 703 1555 15455 2.15 CRYST1 158.400 158.400 138.235 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007234 0.00000