HEADER DNA BINDING PROTEIN 13-JUN-23 8JQ1 TITLE SOLUTION NMR STRUCTURE OF ZINC FINGERS 1-2 (FRAGMENT 257-320) FROM TITLE 2 HUMAN INSULINOMA-ASSOCIATED PROTEIN 1(INSM1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULINOMA-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC FINGER PROTEIN IA-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INSM1, IA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ZINC FINGERS, LONG FLEXIBLE LINKER, C3H/C2H2-TYPE ZINC-FINGERS, DNA KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.L.HE,Y.H.YANG REVDAT 1 19-JUN-24 8JQ1 0 JRNL AUTH X.L.HE,Y.H.YANG JRNL TITL SOLUTION NMR STRUCTURE OF ZINC FINGERS 1-2 (FRAGMENT JRNL TITL 2 257-320) FROM HUMAN INSULINOMA-ASSOCIATED PROTEIN 1(INSM1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FMCGUI, CNS REMARK 3 AUTHORS : LEMAK A., SUNNERGAGEN M., GUTMANAS A., DOHERTY R., REMARK 3 WU B. (FMCGUI), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038591. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 2.0 % [U-13C; U-15N] REMARK 210 RIBONUCLEASE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCACB; 3D HNCO; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 7 84.70 -54.01 REMARK 500 1 SER A 32 95.80 169.67 REMARK 500 1 VAL A 35 78.57 -117.16 REMARK 500 1 VAL A 37 88.96 -153.80 REMARK 500 1 CYS A 44 58.60 -92.10 REMARK 500 1 ALA A 45 -19.02 -46.76 REMARK 500 2 ALA A 45 -5.51 -47.28 REMARK 500 2 LYS A 46 93.38 -47.39 REMARK 500 3 ALA A 4 50.50 -94.47 REMARK 500 3 ALA A 45 -10.93 -46.20 REMARK 500 4 ALA A 45 -16.14 -44.00 REMARK 500 4 LYS A 46 101.47 -51.04 REMARK 500 5 SER A 32 -160.07 -115.28 REMARK 500 5 ALA A 45 -6.04 -54.35 REMARK 500 5 PRO A 63 87.28 -58.31 REMARK 500 6 ARG A 6 90.68 57.37 REMARK 500 6 ALA A 45 -10.64 -44.13 REMARK 500 6 PRO A 63 97.89 -54.47 REMARK 500 7 ALA A 4 19.89 -152.16 REMARK 500 7 ARG A 6 94.27 62.39 REMARK 500 7 PRO A 7 81.72 -65.78 REMARK 500 7 LYS A 17 15.38 56.95 REMARK 500 7 SER A 32 47.17 -140.87 REMARK 500 8 PRO A 7 -153.94 -78.51 REMARK 500 8 ALA A 45 -6.27 -43.39 REMARK 500 9 ILE A 34 92.13 -69.06 REMARK 500 10 ARG A 36 -74.89 -73.23 REMARK 500 10 VAL A 37 144.62 -175.03 REMARK 500 10 ALA A 45 -11.77 -47.86 REMARK 500 11 LEU A 8 36.21 -99.75 REMARK 500 11 LEU A 15 -69.71 -105.44 REMARK 500 11 LYS A 17 -1.44 64.88 REMARK 500 11 GLU A 18 95.05 -65.80 REMARK 500 11 ALA A 45 -12.34 -43.23 REMARK 500 12 SER A 32 -41.92 -136.44 REMARK 500 12 ARG A 33 88.59 -69.23 REMARK 500 12 ARG A 36 -154.62 -154.46 REMARK 500 12 ALA A 45 -17.63 -44.39 REMARK 500 12 LYS A 46 103.30 -55.40 REMARK 500 13 ALA A 45 -15.61 -46.56 REMARK 500 13 PRO A 63 99.61 -48.97 REMARK 500 14 ALA A 5 72.46 -100.24 REMARK 500 14 ARG A 6 76.81 58.29 REMARK 500 14 LYS A 17 27.75 44.29 REMARK 500 14 ARG A 36 -167.62 -69.87 REMARK 500 14 CYS A 44 62.49 -107.40 REMARK 500 14 ALA A 45 -9.11 -44.91 REMARK 500 15 ALA A 5 58.93 -141.28 REMARK 500 15 SER A 32 -151.94 -172.54 REMARK 500 15 ALA A 45 -10.77 -42.40 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 107.2 REMARK 620 3 HIS A 29 NE2 105.9 109.5 REMARK 620 4 CYS A 31 SG 113.9 113.1 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 41 SG REMARK 620 2 CYS A 44 SG 110.7 REMARK 620 3 HIS A 57 NE2 106.8 106.9 REMARK 620 4 HIS A 61 NE2 110.2 111.2 110.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36574 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF ZF1 AND ZF2 FROM HUMAN INSULINOMA- REMARK 900 ASSOCIATED PROTEIN 1(INSM1) DBREF 8JQ1 A 1 64 UNP Q01101 INSM1_HUMAN 257 320 SEQRES 1 A 64 ALA GLY GLY ALA ALA ARG PRO LEU GLY GLU PHE ILE CYS SEQRES 2 A 64 GLN LEU CYS LYS GLU GLU TYR ALA ASP PRO PHE ALA LEU SEQRES 3 A 64 ALA GLN HIS LYS CYS SER ARG ILE VAL ARG VAL GLU TYR SEQRES 4 A 64 ARG CYS PRO GLU CYS ALA LYS VAL PHE SER CYS PRO ALA SEQRES 5 A 64 ASN LEU ALA SER HIS ARG ARG TRP HIS LYS PRO ARG HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 ASP A 22 GLN A 28 1 7 HELIX 2 AA2 PRO A 51 LYS A 62 1 12 SHEET 1 AA1 2 PHE A 11 ILE A 12 0 SHEET 2 AA1 2 GLU A 19 TYR A 20 -1 O TYR A 20 N PHE A 11 LINK SG CYS A 13 ZN ZN A 101 1555 1555 2.32 LINK SG CYS A 16 ZN ZN A 101 1555 1555 2.37 LINK NE2 HIS A 29 ZN ZN A 101 1555 1555 2.08 LINK SG CYS A 31 ZN ZN A 101 1555 1555 2.35 LINK SG CYS A 41 ZN ZN A 102 1555 1555 2.33 LINK SG CYS A 44 ZN ZN A 102 1555 1555 2.33 LINK NE2 HIS A 57 ZN ZN A 102 1555 1555 2.04 LINK NE2 HIS A 61 ZN ZN A 102 1555 1555 2.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1