HEADER OXIDOREDUCTASE 14-JUN-23 8JQJ TITLE CRYSTAL STRUCTURE OF CARBONYL REDUCTASE SSCR MUTANT 1 FROM TITLE 2 SPOROBOLOMYCES SALMONICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE REDUCTASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALDEHYDE REDUCTASE II,ARII; COMPND 5 EC: 1.1.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROBOLOMYCES SALMONICOLOR; SOURCE 3 ORGANISM_TAXID: 5005; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SSCR, REDUCTASE, CARBONYL REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.L.ZHANG,Q.LI,W.D.LIU,X.CHEN,Q.Q.WU,D.M.ZHU REVDAT 1 27-DEC-23 8JQJ 0 JRNL AUTH H.ZHANG,X.CHEN,T.LV,Q.LI,W.LIU,J.FENG,X.LIU,P.YAO,Q.WU,D.ZHU JRNL TITL ENGINEERING A CARBONYL REDUCTASE TO SIMULTANEOUSLY INCREASE JRNL TITL 2 ACTIVITY TOWARD BULKY KETONE AND ISOPROPANOL FOR DYNAMIC JRNL TITL 3 KINETIC ASYMMETRIC REDUCTION VIA ENZYMATIC HYDROGEN TRANSFER JRNL REF ACS CATALYSIS V. 13 9960 2023 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.3C01569 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.870 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 57387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2600 - 3.0200 0.94 5784 299 0.1771 0.1738 REMARK 3 2 3.0200 - 2.4000 1.00 5924 311 0.1876 0.2050 REMARK 3 3 2.4000 - 2.0900 0.84 4931 256 0.1834 0.1887 REMARK 3 4 2.0900 - 1.9200 0.93 4715 250 0.1924 0.2143 REMARK 3 5 1.9000 - 1.7700 0.84 4864 256 0.1962 0.2185 REMARK 3 6 1.7700 - 1.6600 0.89 5203 265 0.2048 0.2432 REMARK 3 7 1.6600 - 1.5800 1.00 5782 296 0.2023 0.2100 REMARK 3 8 1.5800 - 1.5100 1.00 5815 299 0.2064 0.2295 REMARK 3 9 1.5100 - 1.4500 1.00 5756 304 0.2347 0.2646 REMARK 3 10 1.4500 - 1.4000 1.00 5768 309 0.2613 0.3010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2622 REMARK 3 ANGLE : 0.809 3569 REMARK 3 CHIRALITY : 0.071 407 REMARK 3 PLANARITY : 0.007 454 REMARK 3 DIHEDRAL : 5.248 354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES PH 7.5, 25% MPD, 25% PEG 1000 REMARK 280 ,25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.16450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.74550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.17650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.74550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.16450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.17650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 ASP A 169 REMARK 465 PRO A 170 REMARK 465 GLN A 171 REMARK 465 THR A 342 REMARK 465 ALA A 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 132 -136.27 -111.91 REMARK 500 ASN A 207 -120.69 -94.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 8JQJ A 1 343 UNP Q9UUN9 ALD2_SPOSA 1 343 SEQADV 8JQJ PHE A 242 UNP Q9UUN9 MET 242 ENGINEERED MUTATION SEQADV 8JQJ THR A 245 UNP Q9UUN9 GLN 245 ENGINEERED MUTATION SEQRES 1 A 343 MET ALA LYS ILE ASP ASN ALA VAL LEU PRO GLU GLY SER SEQRES 2 A 343 LEU VAL LEU VAL THR GLY ALA ASN GLY PHE VAL ALA SER SEQRES 3 A 343 HIS VAL VAL GLU GLN LEU LEU GLU HIS GLY TYR LYS VAL SEQRES 4 A 343 ARG GLY THR ALA ARG SER ALA SER LYS LEU ALA ASN LEU SEQRES 5 A 343 GLN LYS ARG TRP ASP ALA LYS TYR PRO GLY ARG PHE GLU SEQRES 6 A 343 THR ALA VAL VAL GLU ASP MET LEU LYS GLN GLY ALA TYR SEQRES 7 A 343 ASP GLU VAL ILE LYS GLY ALA ALA GLY VAL ALA HIS ILE SEQRES 8 A 343 ALA SER VAL VAL SER PHE SER ASN LYS TYR ASP GLU VAL SEQRES 9 A 343 VAL THR PRO ALA ILE GLY GLY THR LEU ASN ALA LEU ARG SEQRES 10 A 343 ALA ALA ALA ALA THR PRO SER VAL LYS ARG PHE VAL LEU SEQRES 11 A 343 THR SER SER THR VAL SER ALA LEU ILE PRO LYS PRO ASN SEQRES 12 A 343 VAL GLU GLY ILE TYR LEU ASP GLU LYS SER TRP ASN LEU SEQRES 13 A 343 GLU SER ILE ASP LYS ALA LYS THR LEU PRO GLU SER ASP SEQRES 14 A 343 PRO GLN LYS SER LEU TRP VAL TYR ALA ALA SER LYS THR SEQRES 15 A 343 GLU ALA GLU LEU ALA ALA TRP LYS PHE MET ASP GLU ASN SEQRES 16 A 343 LYS PRO HIS PHE THR LEU ASN ALA VAL LEU PRO ASN TYR SEQRES 17 A 343 THR ILE GLY THR ILE PHE ASP PRO GLU THR GLN SER GLY SEQRES 18 A 343 SER THR SER GLY TRP MET MET SER LEU PHE ASN GLY GLU SEQRES 19 A 343 VAL SER PRO ALA LEU ALA LEU PHE PRO PRO THR TYR TYR SEQRES 20 A 343 VAL SER ALA VAL ASP ILE GLY LEU LEU HIS LEU GLY CYS SEQRES 21 A 343 LEU VAL LEU PRO GLN ILE GLU ARG ARG ARG VAL TYR GLY SEQRES 22 A 343 THR ALA GLY THR PHE ASP TRP ASN THR VAL LEU ALA THR SEQRES 23 A 343 PHE ARG LYS LEU TYR PRO SER LYS THR PHE PRO ALA ASP SEQRES 24 A 343 PHE PRO ASP GLN GLY GLN ASP LEU SER LYS PHE ASP THR SEQRES 25 A 343 ALA PRO SER LEU GLU ILE LEU LYS SER LEU GLY ARG PRO SEQRES 26 A 343 GLY TRP ARG SER ILE GLU GLU SER ILE LYS ASP LEU VAL SEQRES 27 A 343 GLY SER GLU THR ALA FORMUL 2 HOH *260(H2 O) HELIX 1 AA1 GLY A 22 HIS A 35 1 14 HELIX 2 AA2 SER A 45 LYS A 48 5 4 HELIX 3 AA3 LEU A 49 TYR A 60 1 12 HELIX 4 AA4 LYS A 100 ALA A 121 1 22 HELIX 5 AA5 SER A 133 ALA A 137 5 5 HELIX 6 AA6 ASN A 155 LEU A 165 1 11 HELIX 7 AA7 SER A 173 LYS A 196 1 24 HELIX 8 AA8 ASP A 215 SER A 220 1 6 HELIX 9 AA9 SER A 222 ASN A 232 1 11 HELIX 10 AB1 SER A 236 PHE A 242 5 7 HELIX 11 AB2 ALA A 250 LEU A 263 1 14 HELIX 12 AB3 ASP A 279 TYR A 291 1 13 HELIX 13 AB4 THR A 312 LEU A 322 1 11 HELIX 14 AB5 SER A 329 GLY A 339 1 11 SHEET 1 AA1 7 PHE A 64 VAL A 68 0 SHEET 2 AA1 7 LYS A 38 ALA A 43 1 N GLY A 41 O GLU A 65 SHEET 3 AA1 7 LEU A 14 THR A 18 1 N VAL A 17 O ARG A 40 SHEET 4 AA1 7 GLY A 87 HIS A 90 1 O ALA A 89 N LEU A 16 SHEET 5 AA1 7 ARG A 127 THR A 131 1 O VAL A 129 N VAL A 88 SHEET 6 AA1 7 THR A 200 PRO A 206 1 O THR A 200 N PHE A 128 SHEET 7 AA1 7 ARG A 270 GLY A 273 1 O VAL A 271 N ALA A 203 SHEET 1 AA2 2 TYR A 148 LEU A 149 0 SHEET 2 AA2 2 LYS A 309 PHE A 310 1 O LYS A 309 N LEU A 149 SHEET 1 AA3 3 TYR A 208 ILE A 210 0 SHEET 2 AA3 3 THR A 245 SER A 249 1 O VAL A 248 N ILE A 210 SHEET 3 AA3 3 GLY A 276 PHE A 278 -1 O GLY A 276 N TYR A 247 CRYST1 50.329 52.353 117.491 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008511 0.00000