HEADER ENDOCYTOSIS 14-JUN-23 8JQU TITLE CRYSTAL STRUCTURE OF GPPNHP BOUND GTPASE DOMAIN OF RAB5A FROM TITLE 2 LEISHMANIA DONOVANI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB5A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: GPPNHP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA DONOVANI; SOURCE 3 ORGANISM_TAXID: 5661; SOURCE 4 GENE: RAB5A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS EARLY ENDOCYTOSIS, GTPASE, ACTIVE CONFORMATION, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR D.PANDEY,M.ZOHIB,R.K.PAL,B.K.BISWAL,A.ARORA REVDAT 1 19-JUN-24 8JQU 0 JRNL AUTH D.PANDEY,M.ZOHIB,R.K.PAL,B.K.BISWAL,A.ARORA JRNL TITL CRYSTAL STRUCTURE OF GPPNHP BOUND GTPASE DOMAIN OF RAB5A JRNL TITL 2 FROM LEISHMANIA DONOVANI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.993 REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.15200 REMARK 3 B33 (A**2) : -0.27800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1313 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1786 ; 2.130 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 6.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;31.582 ;22.759 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;14.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.837 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 181 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 977 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 639 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 889 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 152 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.012 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 666 ; 2.553 ; 2.345 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 834 ; 3.901 ; 3.499 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 647 ; 3.385 ; 2.469 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 5.104 ; 3.573 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 175 REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2979 14.6012 11.8288 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0051 REMARK 3 T33: 0.0022 T12: -0.0004 REMARK 3 T13: -0.0021 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.3406 L22: 0.2664 REMARK 3 L33: 0.3020 L12: 0.1126 REMARK 3 L13: -0.0024 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0213 S13: 0.0251 REMARK 3 S21: -0.0152 S22: 0.0143 S23: 0.0142 REMARK 3 S31: 0.0094 S32: -0.0268 S33: 0.0030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8JQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 0.1M TRIS-HCL REMARK 280 PH 8.5, 19% PEG 8K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.27600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.13300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.27600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.13300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 HIS A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 MET A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 12 OG1 CG2 REMARK 470 GLU A 43 OE1 OE2 REMARK 470 THR A 54 CG2 REMARK 470 VAL A 55 CG1 CG2 REMARK 470 MET A 56 CG SD CE REMARK 470 ILE A 57 CG1 CG2 CD1 REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 74 CZ NH1 NH2 REMARK 470 GLU A 99 CD OE1 OE2 REMARK 470 LYS A 128 NZ REMARK 470 GLU A 147 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 83 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 46 -63.98 -94.73 REMARK 500 ILE A 57 -78.70 -102.92 REMARK 500 LYS A 127 37.60 72.49 REMARK 500 LEU A 130 43.15 -87.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 27 OG REMARK 620 2 THR A 45 OG1 86.3 REMARK 620 3 GNP A 202 O2G 175.8 90.4 REMARK 620 4 GNP A 202 O2B 92.5 177.4 91.0 REMARK 620 5 HOH A 344 O 87.7 88.8 94.8 88.8 REMARK 620 6 HOH A 353 O 84.2 91.6 93.3 90.5 171.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6L6O RELATED DB: PDB DBREF1 8JQU A 1 175 UNP A0A109NYM0_LEIDO DBREF2 8JQU A A0A109NYM0 1 235 SEQADV 8JQU ASP A 58 UNP A0A109NYM PRO 58 ENGINEERED MUTATION SEQADV 8JQU GLY A 59 UNP A0A109NYM PRO 59 ENGINEERED MUTATION SEQADV 8JQU A UNP A0A109NYM PRO 60 DELETION SEQADV 8JQU A UNP A0A109NYM ARG 61 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 62 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 63 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 64 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 65 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 66 DELETION SEQADV 8JQU A UNP A0A109NYM PRO 67 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 68 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 69 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 70 DELETION SEQADV 8JQU A UNP A0A109NYM THR 71 DELETION SEQADV 8JQU A UNP A0A109NYM SER 72 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 73 DELETION SEQADV 8JQU A UNP A0A109NYM HIS 74 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 75 DELETION SEQADV 8JQU A UNP A0A109NYM LEU 76 DELETION SEQADV 8JQU A UNP A0A109NYM GLN 77 DELETION SEQADV 8JQU A UNP A0A109NYM GLN 78 DELETION SEQADV 8JQU A UNP A0A109NYM MET 79 DELETION SEQADV 8JQU LEU A 72 UNP A0A109NYM GLN 92 ENGINEERED MUTATION SEQADV 8JQU SER A 87 UNP A0A109NYM CYS 107 ENGINEERED MUTATION SEQADV 8JQU A UNP A0A109NYM LEU 196 DELETION SEQADV 8JQU A UNP A0A109NYM ASP 197 DELETION SEQADV 8JQU A UNP A0A109NYM GLN 198 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 199 DELETION SEQADV 8JQU A UNP A0A109NYM LEU 200 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 201 DELETION SEQADV 8JQU A UNP A0A109NYM ASN 202 DELETION SEQADV 8JQU A UNP A0A109NYM ARG 203 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 204 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 205 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 206 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 207 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 208 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 209 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 210 DELETION SEQADV 8JQU A UNP A0A109NYM ARG 211 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 212 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 213 DELETION SEQADV 8JQU A UNP A0A109NYM VAL 214 DELETION SEQADV 8JQU A UNP A0A109NYM VAL 215 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 216 DELETION SEQADV 8JQU A UNP A0A109NYM PRO 217 DELETION SEQADV 8JQU A UNP A0A109NYM ARG 218 DELETION SEQADV 8JQU A UNP A0A109NYM GLY 219 DELETION SEQADV 8JQU A UNP A0A109NYM GLU 220 DELETION SEQADV 8JQU A UNP A0A109NYM ARG 221 DELETION SEQADV 8JQU A UNP A0A109NYM VAL 222 DELETION SEQADV 8JQU A UNP A0A109NYM GLU 223 DELETION SEQADV 8JQU A UNP A0A109NYM GLN 224 DELETION SEQADV 8JQU A UNP A0A109NYM SER 225 DELETION SEQADV 8JQU A UNP A0A109NYM ASN 226 DELETION SEQADV 8JQU A UNP A0A109NYM GLU 227 DELETION SEQADV 8JQU A UNP A0A109NYM SER 228 DELETION SEQADV 8JQU A UNP A0A109NYM ALA 229 DELETION SEQADV 8JQU A UNP A0A109NYM SER 230 DELETION SEQADV 8JQU A UNP A0A109NYM GLN 231 DELETION SEQADV 8JQU A UNP A0A109NYM SER 232 DELETION SEQADV 8JQU A UNP A0A109NYM THR 233 DELETION SEQADV 8JQU A UNP A0A109NYM CYS 234 DELETION SEQADV 8JQU A UNP A0A109NYM CYS 235 DELETION SEQRES 1 A 175 MET ASN THR HIS PRO PRO GLN LEU MET GLU ALA THR SER SEQRES 2 A 175 ALA LYS ILE VAL MET LEU GLY GLU SER GLY ALA GLY LYS SEQRES 3 A 175 SER SER ILE ALA LEU ARG PHE THR ARG ASN GLU PHE LEU SEQRES 4 A 175 ALA ASN GLN GLU THR THR ILE GLY ALA ALA PHE LEU SER SEQRES 5 A 175 LYS THR VAL MET ILE ASP GLY ARG ALA LEU LYS TYR GLU SEQRES 6 A 175 ILE TRP ASP THR ALA GLY LEU GLU ARG PHE ARG SER LEU SEQRES 7 A 175 ALA PRO ILE TYR TYR ARG GLY ALA SER GLY ALA LEU VAL SEQRES 8 A 175 VAL TYR ASP ILE THR ASN SER GLU SER LEU LYS LYS ALA SEQRES 9 A 175 GLN THR TRP ILE LYS GLU LEU ARG ALA ASN ALA ASP PRO SEQRES 10 A 175 SER LEU ILE ILE VAL LEU VAL GLY ASN LYS LYS ASP LEU SEQRES 11 A 175 GLY SER LEU ARG GLN VAL SER PHE GLU ASP GLY GLN ARG SEQRES 12 A 175 LEU ALA ALA GLU GLU GLN LEU ALA ALA PHE TYR GLU ALA SEQRES 13 A 175 SER ALA LYS ASP ASN ASN ASN VAL GLU GLN VAL PHE LEU SEQRES 14 A 175 ASP LEU ALA ALA LYS LEU HET EDO A 201 4 HET GNP A 202 32 HET MG A 203 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *190(H2 O) HELIX 1 AA1 GLY A 25 ASN A 36 1 12 HELIX 2 AA2 LEU A 72 SER A 77 5 6 HELIX 3 AA3 LEU A 78 ARG A 84 1 7 HELIX 4 AA4 ASN A 97 ALA A 115 1 19 HELIX 5 AA5 LEU A 130 ARG A 134 5 5 HELIX 6 AA6 SER A 137 GLU A 148 1 12 HELIX 7 AA7 ASN A 163 LYS A 174 1 12 SHEET 1 AA1 6 ALA A 49 MET A 56 0 SHEET 2 AA1 6 ALA A 61 ASP A 68 -1 O LEU A 62 N VAL A 55 SHEET 3 AA1 6 SER A 13 LEU A 19 1 N ALA A 14 O GLU A 65 SHEET 4 AA1 6 GLY A 88 ASP A 94 1 O VAL A 92 N LEU A 19 SHEET 5 AA1 6 ILE A 120 ASN A 126 1 O ASN A 126 N TYR A 93 SHEET 6 AA1 6 ALA A 152 GLU A 155 1 O TYR A 154 N GLY A 125 LINK OG SER A 27 MG MG A 203 1555 1555 2.02 LINK OG1 THR A 45 MG MG A 203 1555 1555 2.15 LINK O2G GNP A 202 MG MG A 203 1555 1555 1.98 LINK O2B GNP A 202 MG MG A 203 1555 1555 2.04 LINK MG MG A 203 O HOH A 344 1555 1555 2.08 LINK MG MG A 203 O HOH A 353 1555 1555 2.04 CRYST1 110.552 42.266 37.777 90.00 103.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009046 0.000000 0.002153 0.00000 SCALE2 0.000000 0.023660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027210 0.00000