HEADER TRANSPORT PROTEIN 15-JUN-23 8JQW TITLE CRYSTAL STRUCTURE OF V30I MUTATED HUMAN TRANSTHYRETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THYROID HORMONE-BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MIZUGUCHI,S.YAMADA,T.OBITA REVDAT 2 01-MAY-24 8JQW 1 JRNL REVDAT 1 17-APR-24 8JQW 0 JRNL AUTH M.MIZUGUCHI,T.OBITA,S.YAMADA,Y.NABESHIMA JRNL TITL TRYPSIN-INDUCED AGGREGATION OF TRANSTHYRETIN VALINE 30 JRNL TITL 2 VARIANTS ASSOCIATED WITH HEREDITARY AMYLOIDOSIS. JRNL REF FEBS J. V. 291 1732 2024 JRNL REFN ISSN 1742-464X JRNL PMID 38273457 JRNL DOI 10.1111/FEBS.17070 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5500 - 3.5900 0.99 2866 131 0.1714 0.2193 REMARK 3 2 3.5900 - 2.8500 1.00 2759 137 0.1790 0.1952 REMARK 3 3 2.8500 - 2.4900 1.00 2718 140 0.1848 0.2289 REMARK 3 4 2.4900 - 2.2600 1.00 2709 120 0.1792 0.2408 REMARK 3 5 2.2600 - 2.1000 1.00 2694 140 0.1647 0.1992 REMARK 3 6 2.1000 - 1.9800 1.00 2663 151 0.1712 0.2628 REMARK 3 7 1.9800 - 1.8800 1.00 2640 143 0.1709 0.2243 REMARK 3 8 1.8800 - 1.8000 1.00 2678 146 0.2093 0.2523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.184 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1833 REMARK 3 ANGLE : 0.894 2503 REMARK 3 CHIRALITY : 0.066 288 REMARK 3 PLANARITY : 0.008 315 REMARK 3 DIHEDRAL : 5.601 249 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7740 9.4302 -34.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1393 REMARK 3 T33: 0.1039 T12: -0.0203 REMARK 3 T13: -0.0179 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 6.0766 L22: 7.7597 REMARK 3 L33: 6.8779 L12: 1.1437 REMARK 3 L13: -3.9573 L23: -3.0542 REMARK 3 S TENSOR REMARK 3 S11: -0.3627 S12: 0.6719 S13: -0.3864 REMARK 3 S21: -0.6008 S22: 0.2009 S23: -0.0336 REMARK 3 S31: 0.6085 S32: -0.4012 S33: 0.1254 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4543 18.7726 -29.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0488 REMARK 3 T33: 0.1484 T12: 0.0128 REMARK 3 T13: -0.0043 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 7.8195 L22: 3.5894 REMARK 3 L33: 2.1014 L12: 3.9025 REMARK 3 L13: -0.4353 L23: -1.9982 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.0388 S13: 0.2384 REMARK 3 S21: -0.0793 S22: -0.0529 S23: -0.1076 REMARK 3 S31: -0.0511 S32: 0.3025 S33: 0.0391 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6393 11.8082 -17.3134 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1268 REMARK 3 T33: 0.1224 T12: 0.0087 REMARK 3 T13: 0.0214 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.5461 L22: 4.2515 REMARK 3 L33: 7.7053 L12: 0.5799 REMARK 3 L13: 2.3100 L23: 1.9989 REMARK 3 S TENSOR REMARK 3 S11: 0.1306 S12: -0.1106 S13: 0.0297 REMARK 3 S21: 0.1160 S22: -0.2348 S23: 0.2173 REMARK 3 S31: 0.0057 S32: -0.4875 S33: 0.1191 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7679 15.4033 -21.6269 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1376 REMARK 3 T33: 0.1274 T12: -0.0105 REMARK 3 T13: -0.0028 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.0167 L22: 9.0386 REMARK 3 L33: 8.0553 L12: 5.6309 REMARK 3 L13: -4.2222 L23: -4.8106 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.2769 S13: 0.8092 REMARK 3 S21: 0.3134 S22: 0.1661 S23: 0.3287 REMARK 3 S31: -0.0547 S32: -0.3685 S33: -0.1663 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8309 9.7896 -28.0327 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1271 REMARK 3 T33: 0.1580 T12: 0.0190 REMARK 3 T13: 0.0060 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 5.7251 L22: 4.7513 REMARK 3 L33: 5.7043 L12: 3.8673 REMARK 3 L13: -5.4246 L23: -2.9312 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: 0.2554 S13: -0.0119 REMARK 3 S21: -0.3515 S22: 0.1330 S23: -0.4487 REMARK 3 S31: 0.2043 S32: 0.0989 S33: 0.0995 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0415 6.0966 -22.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.1439 REMARK 3 T33: 0.1109 T12: -0.0028 REMARK 3 T13: -0.0096 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 4.6014 L22: 1.9755 REMARK 3 L33: 6.4522 L12: -0.9118 REMARK 3 L13: -5.3483 L23: 1.3063 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.1776 S13: -0.0431 REMARK 3 S21: -0.1889 S22: -0.0249 S23: -0.1894 REMARK 3 S31: -0.0865 S32: -0.0707 S33: -0.0201 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8204 7.9169 -1.7532 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.2186 REMARK 3 T33: 0.1514 T12: -0.0216 REMARK 3 T13: 0.0041 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 5.3674 L22: 8.6415 REMARK 3 L33: 7.5519 L12: -6.0309 REMARK 3 L13: -6.4030 L23: 6.8658 REMARK 3 S TENSOR REMARK 3 S11: -0.3951 S12: -0.9598 S13: -0.1366 REMARK 3 S21: 0.6932 S22: 0.3463 S23: 0.4197 REMARK 3 S31: 0.4891 S32: 0.3566 S33: 0.0490 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1597 2.5377 -5.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1887 REMARK 3 T33: 0.1689 T12: -0.0144 REMARK 3 T13: -0.0508 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.1052 L22: 8.8683 REMARK 3 L33: 7.2068 L12: -0.1558 REMARK 3 L13: -0.5440 L23: 6.7747 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.1620 S13: 0.0359 REMARK 3 S21: 0.1573 S22: 0.1202 S23: -0.6581 REMARK 3 S31: -0.0910 S32: 0.3531 S33: -0.1497 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1126 24.1512 -7.8475 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.1483 REMARK 3 T33: 0.2482 T12: -0.0255 REMARK 3 T13: 0.0191 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 8.5741 L22: 4.5573 REMARK 3 L33: 3.8599 L12: -5.1135 REMARK 3 L13: -0.0740 L23: -0.8133 REMARK 3 S TENSOR REMARK 3 S11: 0.2639 S12: 0.4683 S13: 0.6371 REMARK 3 S21: -0.0241 S22: -0.2590 S23: -0.0929 REMARK 3 S31: -0.5556 S32: -0.0857 S33: 0.0046 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6280 22.4392 -3.9168 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1661 REMARK 3 T33: 0.1918 T12: -0.0352 REMARK 3 T13: 0.0181 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 6.5561 L22: 7.4988 REMARK 3 L33: 9.0520 L12: -3.7583 REMARK 3 L13: 5.8485 L23: -5.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 0.0489 S13: 0.7599 REMARK 3 S21: 0.0726 S22: -0.1294 S23: -0.4880 REMARK 3 S31: -0.2955 S32: 0.0478 S33: 0.3117 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3096 8.7247 2.3997 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.1959 REMARK 3 T33: 0.1382 T12: -0.0155 REMARK 3 T13: -0.0184 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 6.7685 L22: 4.6172 REMARK 3 L33: 6.0557 L12: -5.0084 REMARK 3 L13: -2.2708 L23: 0.9767 REMARK 3 S TENSOR REMARK 3 S11: -0.5109 S12: -0.5323 S13: -0.2181 REMARK 3 S21: 0.9343 S22: 0.3284 S23: 0.1388 REMARK 3 S31: 0.6485 S32: 0.0610 S33: 0.2045 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4889 19.3592 -2.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1084 REMARK 3 T33: 0.1715 T12: -0.0504 REMARK 3 T13: -0.0014 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 7.4292 L22: 4.2804 REMARK 3 L33: 0.8657 L12: -3.5554 REMARK 3 L13: 0.4238 L23: 1.1811 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: -0.0997 S13: 0.5070 REMARK 3 S21: 0.1156 S22: -0.0942 S23: 0.1074 REMARK 3 S31: -0.1218 S32: -0.2400 S33: -0.0098 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3151 9.8362 -14.5796 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1603 REMARK 3 T33: 0.1585 T12: -0.0357 REMARK 3 T13: 0.0058 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.0918 L22: 5.6316 REMARK 3 L33: 7.2627 L12: -1.0581 REMARK 3 L13: 0.7351 L23: -3.5407 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: -0.0250 S13: 0.1179 REMARK 3 S21: -0.0370 S22: -0.2541 S23: -0.3695 REMARK 3 S31: 0.0369 S32: 0.3775 S33: 0.2091 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1036 15.2622 -6.2997 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.1535 REMARK 3 T33: 0.2249 T12: -0.0034 REMARK 3 T13: 0.0520 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 6.8424 L22: 3.5292 REMARK 3 L33: 7.3050 L12: -2.8663 REMARK 3 L13: -0.2155 L23: 2.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.2947 S12: -0.0759 S13: 0.2647 REMARK 3 S21: 0.5280 S22: -0.0676 S23: 0.4274 REMARK 3 S31: 0.1032 S32: -0.3546 S33: 0.3539 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5076 6.4716 -8.3702 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1115 REMARK 3 T33: 0.0878 T12: -0.0174 REMARK 3 T13: -0.0366 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 7.3910 L22: 3.3257 REMARK 3 L33: 1.7153 L12: -1.0851 REMARK 3 L13: -1.9664 L23: 1.4051 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: -0.2856 S13: 0.0464 REMARK 3 S21: 0.2260 S22: 0.0209 S23: 0.0979 REMARK 3 S31: 0.0552 S32: -0.0347 S33: 0.0823 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2717 7.5713 -29.2958 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.1543 REMARK 3 T33: 0.1490 T12: -0.0009 REMARK 3 T13: 0.0095 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 6.1986 L22: 7.4260 REMARK 3 L33: 7.9646 L12: 6.6245 REMARK 3 L13: -7.0698 L23: -7.7133 REMARK 3 S TENSOR REMARK 3 S11: -0.3077 S12: 0.6213 S13: -0.3014 REMARK 3 S21: -0.5421 S22: 0.0531 S23: -0.4313 REMARK 3 S31: 0.4393 S32: -0.2700 S33: 0.2379 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6515 4.2854 -26.2019 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1265 REMARK 3 T33: 0.1646 T12: 0.0070 REMARK 3 T13: -0.0538 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.1598 L22: 4.1448 REMARK 3 L33: 5.3887 L12: 1.6517 REMARK 3 L13: -1.2891 L23: -4.5318 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: 0.1583 S13: 0.1865 REMARK 3 S21: -0.2874 S22: 0.2450 S23: 0.7681 REMARK 3 S31: -0.0305 S32: -0.3242 S33: -0.2160 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8435 24.0613 -24.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1125 REMARK 3 T33: 0.1942 T12: -0.0186 REMARK 3 T13: -0.0003 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 4.0012 L22: 6.1080 REMARK 3 L33: 2.8606 L12: 2.4180 REMARK 3 L13: -0.7225 L23: -0.5586 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: -0.2361 S13: 0.3840 REMARK 3 S21: 0.2252 S22: -0.0495 S23: -0.3558 REMARK 3 S31: -0.2954 S32: 0.2659 S33: -0.0108 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4273 22.6130 -28.3105 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.0860 REMARK 3 T33: 0.1198 T12: 0.0225 REMARK 3 T13: 0.0238 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.7943 L22: 7.0596 REMARK 3 L33: 7.1182 L12: 1.6040 REMARK 3 L13: 1.7728 L23: 2.2106 REMARK 3 S TENSOR REMARK 3 S11: -0.4691 S12: -0.0487 S13: 0.5245 REMARK 3 S21: -0.3618 S22: 0.1166 S23: 0.3060 REMARK 3 S31: -0.6497 S32: 0.1260 S33: 0.3242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 51.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, MGCL2, GLYCEROL, PH 7.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.58500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -43.17000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 355 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 SER A 100 REMARK 465 GLY A 101 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 MET B -8 REMARK 465 ALA B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 CYS B 10 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 90 OE2 GLU B 92 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 310 O REMARK 620 2 HOH A 312 O 85.6 REMARK 620 3 HOH A 317 O 84.9 90.4 REMARK 620 4 HOH A 328 O 169.2 83.9 93.1 REMARK 620 5 HOH A 337 O 89.0 90.8 173.6 93.3 REMARK 620 6 HOH A 368 O 102.1 169.9 83.8 88.2 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 310 O REMARK 620 2 HOH B 320 O 174.2 REMARK 620 3 HOH B 328 O 92.2 91.8 REMARK 620 4 HOH B 330 O 85.9 90.7 170.6 REMARK 620 5 HOH B 336 O 91.0 84.5 96.1 93.1 REMARK 620 6 HOH B 385 O 96.3 87.9 89.0 82.0 170.9 REMARK 620 N 1 2 3 4 5 DBREF 8JQW A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 8JQW B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 8JQW MET A -8 UNP P02766 INITIATING METHIONINE SEQADV 8JQW ALA A -7 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS A -6 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS A -5 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS A -4 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS A -3 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS A -2 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS A -1 UNP P02766 EXPRESSION TAG SEQADV 8JQW MET A 0 UNP P02766 EXPRESSION TAG SEQADV 8JQW ILE A 30 UNP P02766 VAL 50 ENGINEERED MUTATION SEQADV 8JQW MET B -8 UNP P02766 INITIATING METHIONINE SEQADV 8JQW ALA B -7 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS B -6 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS B -5 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS B -4 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS B -3 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS B -2 UNP P02766 EXPRESSION TAG SEQADV 8JQW HIS B -1 UNP P02766 EXPRESSION TAG SEQADV 8JQW MET B 0 UNP P02766 EXPRESSION TAG SEQADV 8JQW ILE B 30 UNP P02766 VAL 50 ENGINEERED MUTATION SEQRES 1 A 136 MET ALA HIS HIS HIS HIS HIS HIS MET GLY PRO THR GLY SEQRES 2 A 136 THR GLY GLU SER LYS CYS PRO LEU MET VAL LYS VAL LEU SEQRES 3 A 136 ASP ALA VAL ARG GLY SER PRO ALA ILE ASN VAL ALA ILE SEQRES 4 A 136 HIS VAL PHE ARG LYS ALA ALA ASP ASP THR TRP GLU PRO SEQRES 5 A 136 PHE ALA SER GLY LYS THR SER GLU SER GLY GLU LEU HIS SEQRES 6 A 136 GLY LEU THR THR GLU GLU GLU PHE VAL GLU GLY ILE TYR SEQRES 7 A 136 LYS VAL GLU ILE ASP THR LYS SER TYR TRP LYS ALA LEU SEQRES 8 A 136 GLY ILE SER PRO PHE HIS GLU HIS ALA GLU VAL VAL PHE SEQRES 9 A 136 THR ALA ASN ASP SER GLY PRO ARG ARG TYR THR ILE ALA SEQRES 10 A 136 ALA LEU LEU SER PRO TYR SER TYR SER THR THR ALA VAL SEQRES 11 A 136 VAL THR ASN PRO LYS GLU SEQRES 1 B 136 MET ALA HIS HIS HIS HIS HIS HIS MET GLY PRO THR GLY SEQRES 2 B 136 THR GLY GLU SER LYS CYS PRO LEU MET VAL LYS VAL LEU SEQRES 3 B 136 ASP ALA VAL ARG GLY SER PRO ALA ILE ASN VAL ALA ILE SEQRES 4 B 136 HIS VAL PHE ARG LYS ALA ALA ASP ASP THR TRP GLU PRO SEQRES 5 B 136 PHE ALA SER GLY LYS THR SER GLU SER GLY GLU LEU HIS SEQRES 6 B 136 GLY LEU THR THR GLU GLU GLU PHE VAL GLU GLY ILE TYR SEQRES 7 B 136 LYS VAL GLU ILE ASP THR LYS SER TYR TRP LYS ALA LEU SEQRES 8 B 136 GLY ILE SER PRO PHE HIS GLU HIS ALA GLU VAL VAL PHE SEQRES 9 B 136 THR ALA ASN ASP SER GLY PRO ARG ARG TYR THR ILE ALA SEQRES 10 B 136 ALA LEU LEU SER PRO TYR SER TYR SER THR THR ALA VAL SEQRES 11 B 136 VAL THR ASN PRO LYS GLU HET MG A 201 1 HET MG B 201 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *156(H2 O) HELIX 1 AA1 ASP A 74 GLY A 83 1 10 HELIX 2 AA2 ASP B 74 LEU B 82 1 9 SHEET 1 AA1 8 SER A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 AA1 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 AA1 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA1 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA1 8 ARG B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA1 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 AA2 8 GLU A 54 LEU A 55 0 SHEET 2 AA2 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 AA2 8 ARG A 104 SER A 112 1 O ILE A 107 N MET A 13 SHEET 4 AA2 8 SER A 115 THR A 123 -1 O THR A 119 N ALA A 108 SHEET 5 AA2 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA2 8 ARG B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 AA2 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 AA2 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 AA3 8 TRP A 41 LYS A 48 0 SHEET 2 AA3 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 AA3 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 AA3 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 AA3 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 AA3 8 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 7 AA3 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 AA3 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 LINK MG MG A 201 O HOH A 310 1555 4455 2.10 LINK MG MG A 201 O HOH A 312 1555 1555 2.04 LINK MG MG A 201 O HOH A 317 1555 1555 2.27 LINK MG MG A 201 O HOH A 328 1555 1555 2.15 LINK MG MG A 201 O HOH A 337 1555 4455 2.02 LINK MG MG A 201 O HOH A 368 1555 4455 2.16 LINK MG MG B 201 O HOH B 310 1555 4554 2.07 LINK MG MG B 201 O HOH B 320 1555 1555 2.15 LINK MG MG B 201 O HOH B 328 1555 4554 2.12 LINK MG MG B 201 O HOH B 330 1555 1555 2.22 LINK MG MG B 201 O HOH B 336 1555 4554 2.06 LINK MG MG B 201 O HOH B 385 1555 4554 1.99 CRYST1 43.170 85.640 64.020 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023164 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015620 0.00000