HEADER STRUCTURAL GENOMICS 17-JUN-23 8JRM TITLE SOLUTION STRUCTURE OF A 7_1 KNOTTED Q9PR55 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN UU089.1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UREAPLASMA PARVUM SEROVAR 3 STR. ATCC 700970; SOURCE 3 ORGANISM_TAXID: 273119; SOURCE 4 GENE: UU089.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KNOTTED PROTEIN, STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.T.D.HSU,C.H.LAI REVDAT 1 19-JUN-24 8JRM 0 JRNL AUTH S.T.D.HSU JRNL TITL SOLUTION STRUCTURE OF A 7_1 KNOTTED Q9PR55 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038743. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.3 MM [U-13C; U-15N] PROTEIN, REMARK 210 50 MM SODIUM PHOSPHATE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCACO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D HCCH- REMARK 210 TOCSY; 2D CBHD REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 -173.57 -174.88 REMARK 500 1 PHE A 33 56.15 32.65 REMARK 500 1 PRO A 45 -94.13 -69.75 REMARK 500 1 ASN A 53 64.46 -104.05 REMARK 500 1 PHE A 57 -37.12 -174.96 REMARK 500 2 LYS A 8 -74.13 -51.85 REMARK 500 2 HIS A 9 131.55 -177.14 REMARK 500 2 PHE A 33 55.70 33.38 REMARK 500 2 PRO A 45 -95.50 -69.77 REMARK 500 2 ASN A 53 52.81 -104.63 REMARK 500 2 SER A 55 -40.51 -134.41 REMARK 500 2 PHE A 57 -34.90 -179.55 REMARK 500 3 ASN A 3 -175.35 -177.07 REMARK 500 3 VAL A 7 31.43 -97.34 REMARK 500 3 LYS A 8 106.27 -52.09 REMARK 500 3 PHE A 33 55.61 33.16 REMARK 500 3 PRO A 45 -94.58 -69.75 REMARK 500 3 PHE A 57 -38.57 -177.72 REMARK 500 4 LYS A 5 -178.79 -57.13 REMARK 500 4 PHE A 33 55.71 33.24 REMARK 500 4 PRO A 45 -94.45 -69.78 REMARK 500 4 ASN A 53 52.45 -112.82 REMARK 500 4 SER A 55 -46.45 -143.47 REMARK 500 4 PHE A 57 -36.80 -177.33 REMARK 500 5 ASN A 3 -178.26 -171.05 REMARK 500 5 TYR A 4 -73.53 -89.47 REMARK 500 5 PHE A 33 56.04 32.90 REMARK 500 5 PRO A 45 -95.62 -69.75 REMARK 500 5 ASN A 53 56.39 -101.73 REMARK 500 5 PHE A 57 -36.66 -179.62 REMARK 500 6 ASN A 3 -176.51 -62.58 REMARK 500 6 PHE A 33 55.55 33.48 REMARK 500 6 PRO A 45 -94.45 -69.75 REMARK 500 6 ASN A 53 64.75 -103.51 REMARK 500 6 PHE A 57 -35.78 -179.93 REMARK 500 7 ASN A 3 -179.57 -178.62 REMARK 500 7 PHE A 33 55.79 32.91 REMARK 500 7 PRO A 45 -94.46 -69.77 REMARK 500 7 ASN A 53 65.19 -103.70 REMARK 500 7 PHE A 57 -36.35 -175.07 REMARK 500 8 ASN A 3 -175.41 -177.31 REMARK 500 8 LYS A 5 -178.27 -57.07 REMARK 500 8 PHE A 33 55.88 32.86 REMARK 500 8 PRO A 45 -94.81 -69.71 REMARK 500 8 ASN A 53 53.78 -103.76 REMARK 500 8 PHE A 57 -35.46 -178.02 REMARK 500 9 ASN A 3 -176.13 -179.14 REMARK 500 9 LYS A 8 -171.96 -69.67 REMARK 500 9 PHE A 33 55.33 33.64 REMARK 500 9 PRO A 45 -93.19 -69.81 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8IWA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF Q9PR55 AT PH 6.5 REMARK 900 RELATED ID: 8IWB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF Q9PR55 AT PH 7.5 REMARK 900 RELATED ID: 8IWC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF Q9PR55 AT PH 6.0 REMARK 900 RELATED ID: 36578 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF A 7_1 KNOTTED Q9PR55 DBREF 8JRM A 1 89 UNP Q9PR55 Y08A_UREPA 1 89 SEQRES 1 A 89 MET TYR ASN TYR LYS GLU VAL LYS HIS MET GLY TYR GLY SEQRES 2 A 89 LYS GLY TYR LEU ALA MET PHE LYS ASN LYS LYS VAL ARG SEQRES 3 A 89 PHE LYS VAL VAL ASN SER PHE PRO ASP LEU LYS VAL GLN SEQRES 4 A 89 PHE VAL THR SER PHE PRO ASP TYR LYS VAL LYS ILE SER SEQRES 5 A 89 ASN SER SER SER PHE CYS GLU GLU THR ILE LYS ILE GLN SEQRES 6 A 89 VAL VAL THR SER PHE PRO ASP VAL LYS LEU GLN LYS VAL SEQRES 7 A 89 THR SER PHE GLY ASP PHE GLU ALA TYR ILE ASP HELIX 1 AA1 GLY A 13 MET A 19 1 7 SHEET 1 AA1 6 VAL A 38 VAL A 41 0 SHEET 2 AA1 6 VAL A 73 VAL A 78 1 O LEU A 75 N GLN A 39 SHEET 3 AA1 6 TYR A 47 LYS A 50 1 N VAL A 49 O GLN A 76 SHEET 4 AA1 6 PHE A 84 ILE A 88 1 O PHE A 84 N LYS A 50 SHEET 5 AA1 6 LYS A 24 VAL A 29 1 N PHE A 27 O TYR A 87 SHEET 6 AA1 6 THR A 61 ILE A 64 1 O ILE A 62 N LYS A 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1