HEADER VIRAL PROTEIN/INHIBITOR 27-JUN-23 8JUX TITLE CRYSTAL STRUCTURE OF SARS-COV-2 PAPAIN-LIKE PROTEASE COMPLEXED WITH TITLE 2 NONCOVALENT INHIBITOR SR-01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NSP7,PAPAIN-LIKE PROTEASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLPRO, INHIBITOR, SARS-COV-2, PROTEASE, DEUBIQUITINASE, VIRAL KEYWDS 2 PROTEIN, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.HSIEH,K.-P.WU REVDAT 1 03-JUL-24 8JUX 0 JRNL AUTH Y.-J.HSIEH,K.-P.WU JRNL TITL CRYSTAL STRUCTURE OF SARS-COV-2 PAPAIN-LIKE PROTEASE JRNL TITL 2 COMPLEXED WITH NONCOVALENT INHIBITOR SR-01 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1447 -5.6500 68.2893 REMARK 3 T TENSOR REMARK 3 T11: 1.4009 T22: 1.1360 REMARK 3 T33: 0.9189 T12: 0.2960 REMARK 3 T13: -0.0326 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.8155 L22: 2.1775 REMARK 3 L33: 2.1544 L12: -1.4891 REMARK 3 L13: 1.1782 L23: -0.3324 REMARK 3 S TENSOR REMARK 3 S11: 0.4905 S12: 0.7803 S13: -0.6886 REMARK 3 S21: -0.9056 S22: -0.1674 S23: -0.2756 REMARK 3 S31: 1.0387 S32: 1.0435 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7564 -0.8562 91.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.8890 T22: 0.7490 REMARK 3 T33: 0.7211 T12: 0.0822 REMARK 3 T13: -0.0681 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 4.3291 L22: 3.2643 REMARK 3 L33: 4.5034 L12: 0.6075 REMARK 3 L13: -1.1446 L23: 0.3967 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.1461 S13: -0.2539 REMARK 3 S21: 0.1104 S22: -0.1916 S23: -0.1121 REMARK 3 S31: 0.5377 S32: 0.3049 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8775 11.4917 107.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.8545 T22: 1.1018 REMARK 3 T33: 0.9790 T12: -0.0836 REMARK 3 T13: -0.1305 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.5119 L22: 4.5663 REMARK 3 L33: 3.2715 L12: 2.1794 REMARK 3 L13: -0.0079 L23: 0.4276 REMARK 3 S TENSOR REMARK 3 S11: 0.2129 S12: -0.3272 S13: 0.2143 REMARK 3 S21: 0.5478 S22: -0.0776 S23: -0.5125 REMARK 3 S31: -0.0947 S32: 0.9850 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7929 32.5357 79.4908 REMARK 3 T TENSOR REMARK 3 T11: 1.8572 T22: 1.6828 REMARK 3 T33: 2.0094 T12: -0.2117 REMARK 3 T13: 0.4908 T23: 0.1230 REMARK 3 L TENSOR REMARK 3 L11: -0.2298 L22: 0.8234 REMARK 3 L33: -0.2229 L12: 0.0340 REMARK 3 L13: 0.2487 L23: 0.2784 REMARK 3 S TENSOR REMARK 3 S11: 0.2410 S12: 0.4302 S13: 0.5963 REMARK 3 S21: -2.2688 S22: 0.0792 S23: -0.9714 REMARK 3 S31: -2.0526 S32: -0.0923 S33: -0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1525 11.2367 86.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.7623 T22: 2.1191 REMARK 3 T33: 1.4156 T12: 0.0346 REMARK 3 T13: 0.0613 T23: 0.1214 REMARK 3 L TENSOR REMARK 3 L11: 2.1233 L22: 2.2160 REMARK 3 L33: 2.0630 L12: -0.3403 REMARK 3 L13: 0.2647 L23: -0.6328 REMARK 3 S TENSOR REMARK 3 S11: 0.1786 S12: 0.1777 S13: 0.1463 REMARK 3 S21: -0.1966 S22: -0.1512 S23: -0.8296 REMARK 3 S31: 0.1389 S32: 1.5871 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2437 -10.4694 89.1832 REMARK 3 T TENSOR REMARK 3 T11: 1.2190 T22: 1.9203 REMARK 3 T33: 1.1959 T12: 0.6705 REMARK 3 T13: 0.0543 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 3.4675 L22: 4.5993 REMARK 3 L33: 1.7621 L12: 0.8116 REMARK 3 L13: 1.1087 L23: 0.3058 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -0.0027 S13: -0.5937 REMARK 3 S21: 0.4467 S22: -0.0062 S23: -0.5050 REMARK 3 S31: 1.5008 S32: 1.8277 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15284 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 1.98800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7D47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM CACODYLATE, PH5.5 , 0.1 REMARK 280 M MAGNESIUM ACETATE, 16% PEG6K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 197.24800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.62400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.93600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.31200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 246.56000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 197.24800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.62400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.31200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 147.93600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 246.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 VAL A 317 REMARK 465 GLU B 1 REMARK 465 VAL B 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 14.10 59.29 REMARK 500 PRO A 59 83.73 -65.24 REMARK 500 LEU A 178 47.64 -89.93 REMARK 500 GLN A 194 47.89 -160.17 REMARK 500 PRO A 223 55.07 -65.01 REMARK 500 LYS A 279 -123.02 -118.75 REMARK 500 ASN A 308 -60.10 -142.96 REMARK 500 ASN B 13 13.49 58.91 REMARK 500 PRO B 59 82.75 -65.64 REMARK 500 LEU B 178 49.96 -87.30 REMARK 500 PRO B 223 55.53 -65.24 REMARK 500 LYS B 279 -121.76 -120.26 REMARK 500 ASN B 308 -60.28 -142.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 501 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 10.73 ANGSTROMS DBREF 8JUX A 1 317 UNP P0DTD1 R1AB_SARS2 1564 1880 DBREF 8JUX B 1 317 UNP P0DTD1 R1AB_SARS2 1564 1880 SEQADV 8JUX SER A 111 UNP P0DTD1 CYS 1674 ENGINEERED MUTATION SEQADV 8JUX SER B 111 UNP P0DTD1 CYS 1674 ENGINEERED MUTATION SEQRES 1 A 317 GLU VAL ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN SEQRES 2 A 317 ILE ASN LEU HIS THR GLN VAL VAL ASP MET SER MET THR SEQRES 3 A 317 TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA SEQRES 4 A 317 ASP VAL THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY SEQRES 5 A 317 LYS THR PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG SEQRES 6 A 317 VAL GLU ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER SEQRES 7 A 317 PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS SEQRES 8 A 317 LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE SEQRES 9 A 317 LYS TRP ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU SEQRES 10 A 317 LEU THR LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO SEQRES 11 A 317 ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU SEQRES 12 A 317 ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN SEQRES 13 A 317 LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SEQRES 14 A 317 SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS SEQRES 15 A 317 ARG VAL LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN SEQRES 16 A 317 GLN THR THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET SEQRES 17 A 317 GLY THR LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN SEQRES 18 A 317 ILE PRO CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU SEQRES 19 A 317 VAL GLN GLN GLU SER PRO PHE VAL MET MET SER ALA PRO SEQRES 20 A 317 PRO ALA GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS SEQRES 21 A 317 ALA SER GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR SEQRES 22 A 317 LYS HIS ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP SEQRES 23 A 317 GLY ALA LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO SEQRES 24 A 317 ILE THR ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR SEQRES 25 A 317 THR ILE LYS PRO VAL SEQRES 1 B 317 GLU VAL ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN SEQRES 2 B 317 ILE ASN LEU HIS THR GLN VAL VAL ASP MET SER MET THR SEQRES 3 B 317 TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA SEQRES 4 B 317 ASP VAL THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY SEQRES 5 B 317 LYS THR PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG SEQRES 6 B 317 VAL GLU ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER SEQRES 7 B 317 PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS SEQRES 8 B 317 LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE SEQRES 9 B 317 LYS TRP ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU SEQRES 10 B 317 LEU THR LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO SEQRES 11 B 317 ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU SEQRES 12 B 317 ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN SEQRES 13 B 317 LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SEQRES 14 B 317 SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS SEQRES 15 B 317 ARG VAL LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN SEQRES 16 B 317 GLN THR THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET SEQRES 17 B 317 GLY THR LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN SEQRES 18 B 317 ILE PRO CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU SEQRES 19 B 317 VAL GLN GLN GLU SER PRO PHE VAL MET MET SER ALA PRO SEQRES 20 B 317 PRO ALA GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS SEQRES 21 B 317 ALA SER GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR SEQRES 22 B 317 LYS HIS ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP SEQRES 23 B 317 GLY ALA LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO SEQRES 24 B 317 ILE THR ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR SEQRES 25 B 317 THR ILE LYS PRO VAL HET MG A 400 1 HET V00 A 401 31 HET V00 B 401 31 HETNAM MG MAGNESIUM ION HETNAM V00 ~{N}-[(3-FLUOROPHENYL)METHYL]-1-[(1~{R})-1-(3- HETNAM 2 V00 METHOXYNAPHTHALEN-1-YL)ETHYL]PIPERIDINE-4-CARBOXAMIDE FORMUL 3 MG MG 2+ FORMUL 4 V00 2(C26 H29 F N2 O2) FORMUL 6 HOH *7(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 ALA A 141 1 13 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 VAL A 202 ALA A 204 5 3 HELIX 10 AB1 SER A 212 GLY A 219 1 8 HELIX 11 AB2 THR B 26 GLY B 32 1 7 HELIX 12 AB3 HIS B 47 GLU B 51 5 5 HELIX 13 AB4 ASP B 61 HIS B 73 1 13 HELIX 14 AB5 SER B 78 LYS B 91 1 14 HELIX 15 AB6 ASN B 110 GLN B 121 1 12 HELIX 16 AB7 PRO B 129 ALA B 141 1 13 HELIX 17 AB8 ALA B 144 CYS B 155 1 12 HELIX 18 AB9 ASP B 164 HIS B 175 1 12 HELIX 19 AC1 GLY B 201 ALA B 204 5 4 HELIX 20 AC2 SER B 212 GLY B 219 1 8 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N ILE A 5 O VAL A 21 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N THR A 10 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 THR A 197 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 VAL A 188 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 4 THR A 231 GLU A 238 -1 O THR A 231 N VAL A 188 SHEET 4 AA3 4 VAL A 220 GLN A 221 -1 N VAL A 220 O LYS A 232 SHEET 1 AA4 4 THR A 197 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 VAL A 188 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 THR A 231 GLU A 238 -1 O THR A 231 N VAL A 188 SHEET 4 AA4 4 TYR A 310 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O GLY A 298 N TYR A 251 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O ILE A 276 N ALA A 261 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 SHEET 1 AA6 5 HIS B 17 ASP B 22 0 SHEET 2 AA6 5 THR B 4 THR B 10 -1 N ILE B 5 O VAL B 21 SHEET 3 AA6 5 THR B 54 VAL B 57 1 O PHE B 55 N PHE B 8 SHEET 4 AA6 5 THR B 34 LEU B 36 -1 N TYR B 35 O TYR B 56 SHEET 5 AA6 5 ALA B 39 ASP B 40 -1 O ALA B 39 N LEU B 36 SHEET 1 AA7 2 GLN B 97 VAL B 98 0 SHEET 2 AA7 2 LEU B 101 THR B 102 -1 O LEU B 101 N VAL B 98 SHEET 1 AA8 4 GLN B 196 LEU B 199 0 SHEET 2 AA8 4 LYS B 182 VAL B 188 -1 N ARG B 183 O LEU B 199 SHEET 3 AA8 4 THR B 231 GLU B 238 -1 O GLN B 236 N VAL B 184 SHEET 4 AA8 4 VAL B 220 GLN B 221 -1 N VAL B 220 O LYS B 232 SHEET 1 AA9 4 GLN B 196 LEU B 199 0 SHEET 2 AA9 4 LYS B 182 VAL B 188 -1 N ARG B 183 O LEU B 199 SHEET 3 AA9 4 THR B 231 GLU B 238 -1 O GLN B 236 N VAL B 184 SHEET 4 AA9 4 TYR B 310 THR B 311 -1 O TYR B 310 N GLN B 237 SHEET 1 AB1 7 MET B 206 MET B 208 0 SHEET 2 AB1 7 PHE B 241 LEU B 253 1 O SER B 245 N TYR B 207 SHEET 3 AB1 7 TYR B 296 LYS B 306 -1 O GLY B 298 N TYR B 251 SHEET 4 AB1 7 CYS B 260 GLY B 266 -1 N CYS B 260 O PHE B 304 SHEET 5 AB1 7 GLY B 271 SER B 278 -1 O LYS B 274 N GLU B 263 SHEET 6 AB1 7 LEU B 282 ASP B 286 -1 O ILE B 285 N HIS B 275 SHEET 7 AB1 7 LEU B 289 SER B 293 -1 O THR B 291 N CYS B 284 CRYST1 99.830 99.830 295.872 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010017 0.005783 0.000000 0.00000 SCALE2 0.000000 0.011567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003380 0.00000