HEADER TRANSPORT PROTEIN 27-JUN-23 8JV7 TITLE CRYO-EM STRUCTURE OF THE PANDA P2X7 RECEPTOR IN COMPLEX WITH PPADS COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2X PURINOCEPTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AILUROPODA MELANOLEUCA; SOURCE 3 ORGANISM_COMMON: GIANT PANDA; SOURCE 4 ORGANISM_TAXID: 9646; SOURCE 5 GENE: PANDA_000894; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CHANNEL, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR D.SHENG,M.HATTORI REVDAT 3 15-MAY-24 8JV7 1 JRNL REVDAT 2 24-APR-24 8JV7 1 TITLE REVDAT 1 29-NOV-23 8JV7 0 JRNL AUTH D.SHENG,C.X.YUE,F.JIN,Y.WANG,M.ICHIKAWA,Y.YU,C.R.GUO, JRNL AUTH 2 M.HATTORI JRNL TITL STRUCTURAL INSIGHTS INTO THE ORTHOSTERIC INHIBITION OF P2X JRNL TITL 2 RECEPTORS BY NON-ATP ANALOG ANTAGONISTS. JRNL REF ELIFE V. 12 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38578670 JRNL DOI 10.7554/ELIFE.92829 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.SHENG,C.YUE,F.JIN,Y.WANG,M.ICHIKAWA,Y.YU,C.R.GUO,M.HATTORI REMARK 1 TITL STRUCTURAL INSIGHTS INTO THE ORTHOSTERIC INHIBITION OF P2X REMARK 1 TITL 2 RECEPTORS BY NON-ATP-ANALOG ANTAGONISTS REMARK 1 REF ELIFE 2023 REMARK 1 REFN ESSN 2050-084X REMARK 1 DOI 10.7554/ELIFE.92829.1 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 161188 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8JV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038996. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : P2X7 TRIMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 TYR A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 ILE A 29 REMARK 465 LYS A 30 REMARK 465 ILE A 351 REMARK 465 ASP A 352 REMARK 465 ILE A 353 REMARK 465 LEU A 354 REMARK 465 ILE A 355 REMARK 465 ASN A 356 REMARK 465 THR A 357 REMARK 465 TYR A 358 REMARK 465 SER A 359 REMARK 465 ALA A 360 REMARK 465 SER A 361 REMARK 465 SER A 362 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 THR B 24 REMARK 465 ASN B 25 REMARK 465 TYR B 26 REMARK 465 GLY B 27 REMARK 465 THR B 28 REMARK 465 ILE B 29 REMARK 465 LYS B 30 REMARK 465 ILE B 351 REMARK 465 ASP B 352 REMARK 465 ILE B 353 REMARK 465 LEU B 354 REMARK 465 ILE B 355 REMARK 465 ASN B 356 REMARK 465 THR B 357 REMARK 465 TYR B 358 REMARK 465 SER B 359 REMARK 465 ALA B 360 REMARK 465 SER B 361 REMARK 465 SER B 362 REMARK 465 GLY C 21 REMARK 465 SER C 22 REMARK 465 SER C 23 REMARK 465 THR C 24 REMARK 465 ASN C 25 REMARK 465 TYR C 26 REMARK 465 GLY C 27 REMARK 465 THR C 28 REMARK 465 ILE C 29 REMARK 465 LYS C 30 REMARK 465 ILE C 351 REMARK 465 ASP C 352 REMARK 465 ILE C 353 REMARK 465 LEU C 354 REMARK 465 ILE C 355 REMARK 465 ASN C 356 REMARK 465 THR C 357 REMARK 465 TYR C 358 REMARK 465 SER C 359 REMARK 465 ALA C 360 REMARK 465 SER C 361 REMARK 465 SER C 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 32 CG1 CG2 CD1 REMARK 470 PHE A 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 36 CG CD1 CD2 REMARK 470 SER A 39 OG REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 54 CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ASN A 78 CG OD1 ND2 REMARK 470 MET A 80 CG SD CE REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 MET A 83 CE REMARK 470 LEU A 97 CG CD1 CD2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 LEU A 118 CG CD1 CD2 REMARK 470 ARG A 126 NE CZ NH1 NH2 REMARK 470 SER A 130 OG REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 MET A 140 CG SD CE REMARK 470 ASP A 141 CG OD1 OD2 REMARK 470 SER A 144 OG REMARK 470 ARG A 151 NE CZ NH1 NH2 REMARK 470 VAL A 154 CG1 CG2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 159 CG CD1 CD2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 ILE A 214 CG1 CG2 CD1 REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 THR A 282 OG1 CG2 REMARK 470 THR A 283 OG1 CG2 REMARK 470 SER A 284 OG REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 SER A 286 OG REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ASN A 302 CG OD1 ND2 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 VAL A 335 CG1 CG2 REMARK 470 LEU A 346 CG CD1 CD2 REMARK 470 THR A 348 OG1 CG2 REMARK 470 VAL A 349 CG1 CG2 REMARK 470 PHE A 350 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 32 CG1 CG2 CD1 REMARK 470 PHE B 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 36 CG CD1 CD2 REMARK 470 SER B 39 OG REMARK 470 ILE B 46 CG1 CG2 CD1 REMARK 470 LYS B 49 CE NZ REMARK 470 LYS B 54 CD CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LEU B 76 CG CD1 CD2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 ASN B 78 CG OD1 ND2 REMARK 470 MET B 80 CG SD CE REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 MET B 83 CE REMARK 470 LEU B 97 CG CD1 CD2 REMARK 470 ASN B 100 CG OD1 ND2 REMARK 470 LEU B 118 CG CD1 CD2 REMARK 470 ARG B 126 NE CZ NH1 NH2 REMARK 470 SER B 130 OG REMARK 470 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2 REMARK 470 MET B 140 CG SD CE REMARK 470 ASP B 141 CG OD1 OD2 REMARK 470 SER B 144 OG REMARK 470 ARG B 151 NE CZ NH1 NH2 REMARK 470 VAL B 154 CG1 CG2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 LEU B 209 CG CD1 CD2 REMARK 470 ILE B 214 CG1 CG2 CD1 REMARK 470 GLN B 222 CG CD OE1 NE2 REMARK 470 ASP B 259 CG OD1 OD2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 THR B 282 OG1 CG2 REMARK 470 THR B 283 OG1 CG2 REMARK 470 SER B 284 OG REMARK 470 GLU B 285 CG CD OE1 OE2 REMARK 470 SER B 286 OG REMARK 470 LEU B 287 CG CD1 CD2 REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 470 ASN B 302 CG OD1 ND2 REMARK 470 ASN B 303 CG OD1 ND2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 VAL B 335 CG1 CG2 REMARK 470 LEU B 346 CG CD1 CD2 REMARK 470 THR B 348 OG1 CG2 REMARK 470 VAL B 349 CG1 CG2 REMARK 470 PHE B 350 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE C 32 CG1 CG2 CD1 REMARK 470 PHE C 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 36 CG CD1 CD2 REMARK 470 SER C 39 OG REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 470 LYS C 49 CE NZ REMARK 470 LYS C 54 CD CE NZ REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 GLU C 70 CG CD OE1 OE2 REMARK 470 LYS C 72 CG CD CE NZ REMARK 470 GLU C 74 CG CD OE1 OE2 REMARK 470 LEU C 76 CG CD1 CD2 REMARK 470 GLU C 77 CG CD OE1 OE2 REMARK 470 ASN C 78 CG OD1 ND2 REMARK 470 MET C 80 CG SD CE REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 LYS C 82 CG CD CE NZ REMARK 470 MET C 83 CE REMARK 470 LEU C 97 CG CD1 CD2 REMARK 470 ASN C 100 CG OD1 ND2 REMARK 470 LEU C 118 CG CD1 CD2 REMARK 470 ARG C 126 NE CZ NH1 NH2 REMARK 470 SER C 130 OG REMARK 470 ARG C 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 136 CG CD CE NZ REMARK 470 LYS C 137 CG CD CE NZ REMARK 470 ARG C 139 CG CD NE CZ NH1 NH2 REMARK 470 MET C 140 CG SD CE REMARK 470 ASP C 141 CG OD1 OD2 REMARK 470 SER C 144 OG REMARK 470 ARG C 151 NE CZ NH1 NH2 REMARK 470 VAL C 154 CG1 CG2 REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 GLU C 157 CG CD OE1 OE2 REMARK 470 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 159 CG CD1 CD2 REMARK 470 LYS C 160 CG CD CE NZ REMARK 470 GLU C 163 CG CD OE1 OE2 REMARK 470 GLU C 171 CG CD OE1 OE2 REMARK 470 GLU C 172 CG CD OE1 OE2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 LEU C 209 CG CD1 CD2 REMARK 470 ILE C 214 CG1 CG2 CD1 REMARK 470 GLN C 222 CG CD OE1 NE2 REMARK 470 ASP C 259 CG OD1 OD2 REMARK 470 LYS C 281 CG CD CE NZ REMARK 470 THR C 282 OG1 CG2 REMARK 470 THR C 283 OG1 CG2 REMARK 470 SER C 284 OG REMARK 470 GLU C 285 CG CD OE1 OE2 REMARK 470 SER C 286 OG REMARK 470 LEU C 287 CG CD1 CD2 REMARK 470 LYS C 300 CG CD CE NZ REMARK 470 GLU C 301 CG CD OE1 OE2 REMARK 470 ASN C 302 CG OD1 ND2 REMARK 470 ASN C 303 CG OD1 ND2 REMARK 470 GLU C 305 CG CD OE1 OE2 REMARK 470 LYS C 306 CG CD CE NZ REMARK 470 VAL C 335 CG1 CG2 REMARK 470 LEU C 346 CG CD1 CD2 REMARK 470 THR C 348 OG1 CG2 REMARK 470 VAL C 349 CG1 CG2 REMARK 470 PHE C 350 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 67 OH TYR A 93 2.15 REMARK 500 O GLY C 67 OH TYR C 93 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 142 CA - N - CD ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 90 1.07 -66.11 REMARK 500 SER A 144 145.21 -174.10 REMARK 500 ALA A 166 -167.43 -162.24 REMARK 500 LEU A 182 57.51 -95.86 REMARK 500 ASN A 202 76.05 -101.02 REMARK 500 ASN A 223 88.85 -159.32 REMARK 500 ASP B 92 -60.54 -96.94 REMARK 500 ASN B 187 50.79 -93.12 REMARK 500 ASN B 223 87.33 -159.54 REMARK 500 THR C 106 -52.51 -120.35 REMARK 500 ALA C 166 -167.76 -165.73 REMARK 500 LEU C 182 52.70 -92.96 REMARK 500 ASN C 202 64.68 -101.04 REMARK 500 ASN C 223 81.92 -156.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36670 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURES OF THE PANDA P2X7 RECEPTOR IN COMPLEX WITH PPADS DBREF 8JV7 A 23 359 UNP D2GVW0 D2GVW0_AILME 23 359 DBREF 8JV7 B 23 359 UNP D2GVW0 D2GVW0_AILME 23 359 DBREF 8JV7 C 23 359 UNP D2GVW0 D2GVW0_AILME 23 359 SEQADV 8JV7 GLY A 21 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER A 22 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 ALA A 35 UNP D2GVW0 VAL 35 ENGINEERED MUTATION SEQADV 8JV7 ALA A 125 UNP D2GVW0 ARG 125 ENGINEERED MUTATION SEQADV 8JV7 LYS A 174 UNP D2GVW0 GLU 174 ENGINEERED MUTATION SEQADV 8JV7 SER A 241 UNP D2GVW0 ASN 241 ENGINEERED MUTATION SEQADV 8JV7 SER A 284 UNP D2GVW0 ASN 284 ENGINEERED MUTATION SEQADV 8JV7 ALA A 360 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER A 361 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER A 362 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 GLY B 21 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER B 22 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 ALA B 35 UNP D2GVW0 VAL 35 ENGINEERED MUTATION SEQADV 8JV7 ALA B 125 UNP D2GVW0 ARG 125 ENGINEERED MUTATION SEQADV 8JV7 LYS B 174 UNP D2GVW0 GLU 174 ENGINEERED MUTATION SEQADV 8JV7 SER B 241 UNP D2GVW0 ASN 241 ENGINEERED MUTATION SEQADV 8JV7 SER B 284 UNP D2GVW0 ASN 284 ENGINEERED MUTATION SEQADV 8JV7 ALA B 360 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER B 361 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER B 362 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 GLY C 21 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER C 22 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 ALA C 35 UNP D2GVW0 VAL 35 ENGINEERED MUTATION SEQADV 8JV7 ALA C 125 UNP D2GVW0 ARG 125 ENGINEERED MUTATION SEQADV 8JV7 LYS C 174 UNP D2GVW0 GLU 174 ENGINEERED MUTATION SEQADV 8JV7 SER C 241 UNP D2GVW0 ASN 241 ENGINEERED MUTATION SEQADV 8JV7 SER C 284 UNP D2GVW0 ASN 284 ENGINEERED MUTATION SEQADV 8JV7 ALA C 360 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER C 361 UNP D2GVW0 EXPRESSION TAG SEQADV 8JV7 SER C 362 UNP D2GVW0 EXPRESSION TAG SEQRES 1 A 342 GLY SER SER THR ASN TYR GLY THR ILE LYS TRP ILE PHE SEQRES 2 A 342 HIS ALA LEU VAL PHE SER TYR ILE SER PHE ALA LEU ILE SEQRES 3 A 342 SER ASP LYS ARG TYR GLN LYS LYS GLU PRO LEU ILE SER SEQRES 4 A 342 SER VAL HIS THR LYS VAL LYS GLY ILE ALA GLU VAL LYS SEQRES 5 A 342 ALA GLU ILE LEU GLU ASN GLY MET LYS LYS MET VAL SER SEQRES 6 A 342 GLY VAL PHE ASP THR ALA ASP TYR THR PHE PRO LEU GLN SEQRES 7 A 342 GLY ASN SER PHE PHE VAL MET THR ASN PHE ILE LYS THR SEQRES 8 A 342 GLU GLY GLN GLN GLN GLY LEU CYS PRO ASP PHE PRO THR SEQRES 9 A 342 ALA ARG THR ILE CYS SER SER ASP ARG GLY CYS LYS LYS SEQRES 10 A 342 GLY ARG MET ASP PRO GLN SER LYS GLY ILE GLN THR GLY SEQRES 11 A 342 ARG CYS VAL VAL TYR LYS GLU ARG LEU LYS THR CYS GLU SEQRES 12 A 342 VAL SER ALA TRP CYS PRO ILE GLU GLU VAL LYS ASP ALA SEQRES 13 A 342 PRO ARG PRO ALA LEU LEU ASN SER ALA GLU ASN PHE THR SEQRES 14 A 342 VAL LEU ILE LYS ASN ASN ILE ASP PHE PRO GLY HIS ASN SEQRES 15 A 342 TYR THR THR ARG ASN ILE LEU PRO GLY VAL ASN ILE THR SEQRES 16 A 342 CYS THR PHE HIS LYS THR GLN ASN PRO GLN CYS PRO ILE SEQRES 17 A 342 PHE ARG LEU GLY ASP ILE PHE GLN GLU THR GLY ASP SER SEQRES 18 A 342 PHE SER ASP VAL ALA ILE GLN GLY GLY ILE MET GLY ILE SEQRES 19 A 342 GLU ILE TYR TRP ASP CYS ASN LEU ASP GLY TRP PHE HIS SEQRES 20 A 342 HIS CYS ARG PRO LYS TYR SER PHE ARG ARG LEU ASP ASP SEQRES 21 A 342 LYS THR THR SER GLU SER LEU TYR PRO GLY TYR ASN PHE SEQRES 22 A 342 ARG TYR ALA LYS TYR TYR LYS GLU ASN ASN VAL GLU LYS SEQRES 23 A 342 ARG THR LEU ILE LYS VAL PHE GLY ILE ARG PHE ASP ILE SEQRES 24 A 342 LEU VAL PHE GLY THR GLY GLY LYS PHE ASN VAL ILE GLN SEQRES 25 A 342 LEU ALA VAL TYR ILE GLY SER VAL ILE SER TYR PHE GLY SEQRES 26 A 342 LEU ALA THR VAL PHE ILE ASP ILE LEU ILE ASN THR TYR SEQRES 27 A 342 SER ALA SER SER SEQRES 1 B 342 GLY SER SER THR ASN TYR GLY THR ILE LYS TRP ILE PHE SEQRES 2 B 342 HIS ALA LEU VAL PHE SER TYR ILE SER PHE ALA LEU ILE SEQRES 3 B 342 SER ASP LYS ARG TYR GLN LYS LYS GLU PRO LEU ILE SER SEQRES 4 B 342 SER VAL HIS THR LYS VAL LYS GLY ILE ALA GLU VAL LYS SEQRES 5 B 342 ALA GLU ILE LEU GLU ASN GLY MET LYS LYS MET VAL SER SEQRES 6 B 342 GLY VAL PHE ASP THR ALA ASP TYR THR PHE PRO LEU GLN SEQRES 7 B 342 GLY ASN SER PHE PHE VAL MET THR ASN PHE ILE LYS THR SEQRES 8 B 342 GLU GLY GLN GLN GLN GLY LEU CYS PRO ASP PHE PRO THR SEQRES 9 B 342 ALA ARG THR ILE CYS SER SER ASP ARG GLY CYS LYS LYS SEQRES 10 B 342 GLY ARG MET ASP PRO GLN SER LYS GLY ILE GLN THR GLY SEQRES 11 B 342 ARG CYS VAL VAL TYR LYS GLU ARG LEU LYS THR CYS GLU SEQRES 12 B 342 VAL SER ALA TRP CYS PRO ILE GLU GLU VAL LYS ASP ALA SEQRES 13 B 342 PRO ARG PRO ALA LEU LEU ASN SER ALA GLU ASN PHE THR SEQRES 14 B 342 VAL LEU ILE LYS ASN ASN ILE ASP PHE PRO GLY HIS ASN SEQRES 15 B 342 TYR THR THR ARG ASN ILE LEU PRO GLY VAL ASN ILE THR SEQRES 16 B 342 CYS THR PHE HIS LYS THR GLN ASN PRO GLN CYS PRO ILE SEQRES 17 B 342 PHE ARG LEU GLY ASP ILE PHE GLN GLU THR GLY ASP SER SEQRES 18 B 342 PHE SER ASP VAL ALA ILE GLN GLY GLY ILE MET GLY ILE SEQRES 19 B 342 GLU ILE TYR TRP ASP CYS ASN LEU ASP GLY TRP PHE HIS SEQRES 20 B 342 HIS CYS ARG PRO LYS TYR SER PHE ARG ARG LEU ASP ASP SEQRES 21 B 342 LYS THR THR SER GLU SER LEU TYR PRO GLY TYR ASN PHE SEQRES 22 B 342 ARG TYR ALA LYS TYR TYR LYS GLU ASN ASN VAL GLU LYS SEQRES 23 B 342 ARG THR LEU ILE LYS VAL PHE GLY ILE ARG PHE ASP ILE SEQRES 24 B 342 LEU VAL PHE GLY THR GLY GLY LYS PHE ASN VAL ILE GLN SEQRES 25 B 342 LEU ALA VAL TYR ILE GLY SER VAL ILE SER TYR PHE GLY SEQRES 26 B 342 LEU ALA THR VAL PHE ILE ASP ILE LEU ILE ASN THR TYR SEQRES 27 B 342 SER ALA SER SER SEQRES 1 C 342 GLY SER SER THR ASN TYR GLY THR ILE LYS TRP ILE PHE SEQRES 2 C 342 HIS ALA LEU VAL PHE SER TYR ILE SER PHE ALA LEU ILE SEQRES 3 C 342 SER ASP LYS ARG TYR GLN LYS LYS GLU PRO LEU ILE SER SEQRES 4 C 342 SER VAL HIS THR LYS VAL LYS GLY ILE ALA GLU VAL LYS SEQRES 5 C 342 ALA GLU ILE LEU GLU ASN GLY MET LYS LYS MET VAL SER SEQRES 6 C 342 GLY VAL PHE ASP THR ALA ASP TYR THR PHE PRO LEU GLN SEQRES 7 C 342 GLY ASN SER PHE PHE VAL MET THR ASN PHE ILE LYS THR SEQRES 8 C 342 GLU GLY GLN GLN GLN GLY LEU CYS PRO ASP PHE PRO THR SEQRES 9 C 342 ALA ARG THR ILE CYS SER SER ASP ARG GLY CYS LYS LYS SEQRES 10 C 342 GLY ARG MET ASP PRO GLN SER LYS GLY ILE GLN THR GLY SEQRES 11 C 342 ARG CYS VAL VAL TYR LYS GLU ARG LEU LYS THR CYS GLU SEQRES 12 C 342 VAL SER ALA TRP CYS PRO ILE GLU GLU VAL LYS ASP ALA SEQRES 13 C 342 PRO ARG PRO ALA LEU LEU ASN SER ALA GLU ASN PHE THR SEQRES 14 C 342 VAL LEU ILE LYS ASN ASN ILE ASP PHE PRO GLY HIS ASN SEQRES 15 C 342 TYR THR THR ARG ASN ILE LEU PRO GLY VAL ASN ILE THR SEQRES 16 C 342 CYS THR PHE HIS LYS THR GLN ASN PRO GLN CYS PRO ILE SEQRES 17 C 342 PHE ARG LEU GLY ASP ILE PHE GLN GLU THR GLY ASP SER SEQRES 18 C 342 PHE SER ASP VAL ALA ILE GLN GLY GLY ILE MET GLY ILE SEQRES 19 C 342 GLU ILE TYR TRP ASP CYS ASN LEU ASP GLY TRP PHE HIS SEQRES 20 C 342 HIS CYS ARG PRO LYS TYR SER PHE ARG ARG LEU ASP ASP SEQRES 21 C 342 LYS THR THR SER GLU SER LEU TYR PRO GLY TYR ASN PHE SEQRES 22 C 342 ARG TYR ALA LYS TYR TYR LYS GLU ASN ASN VAL GLU LYS SEQRES 23 C 342 ARG THR LEU ILE LYS VAL PHE GLY ILE ARG PHE ASP ILE SEQRES 24 C 342 LEU VAL PHE GLY THR GLY GLY LYS PHE ASN VAL ILE GLN SEQRES 25 C 342 LEU ALA VAL TYR ILE GLY SER VAL ILE SER TYR PHE GLY SEQRES 26 C 342 LEU ALA THR VAL PHE ILE ASP ILE LEU ILE ASN THR TYR SEQRES 27 C 342 SER ALA SER SER HET NAG A 401 14 HET NAG A 402 14 HET UO6 A 403 32 HET NAG B 401 14 HET NAG B 402 14 HET UO6 B 403 32 HET NAG C 401 14 HET NAG C 402 14 HET UO6 C 403 32 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM UO6 4-[(E)-[4-METHANOYL-6-METHYL-5-OXIDANYL-3- HETNAM 2 UO6 (PHOSPHONOOXYMETHYL)PYRIDIN-2-YL]DIAZENYL]BENZENE-1,3- HETNAM 3 UO6 DISULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN UO6 PPADS FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 6 UO6 3(C14 H14 N3 O12 P S2) FORMUL 13 HOH *3(H2 O) HELIX 1 AA1 TRP A 31 LYS A 49 1 19 HELIX 2 AA2 LEU A 182 ASN A 187 5 6 HELIX 3 AA3 LEU A 231 THR A 238 1 8 HELIX 4 AA4 SER A 241 ILE A 247 1 7 HELIX 5 AA5 VAL A 330 PHE A 350 1 21 HELIX 6 AA6 ILE B 32 LYS B 49 1 18 HELIX 7 AA7 SER B 131 CYS B 135 5 5 HELIX 8 AA8 LEU B 182 ASN B 187 5 6 HELIX 9 AA9 LEU B 231 GLY B 239 1 9 HELIX 10 AB1 SER B 241 ALA B 246 1 6 HELIX 11 AB2 ASN B 329 PHE B 350 1 22 HELIX 12 AB3 ILE C 32 LYS C 49 1 18 HELIX 13 AB4 LEU C 182 ASN C 187 5 6 HELIX 14 AB5 LEU C 231 GLY C 239 1 9 HELIX 15 AB6 SER C 241 GLN C 248 1 8 HELIX 16 AB7 VAL C 330 PHE C 350 1 21 SHEET 1 AA1 3 GLN A 52 GLU A 55 0 SHEET 2 AA1 3 ILE A 315 PHE A 328 -1 O LYS A 327 N LYS A 53 SHEET 3 AA1 3 SER A 101 PHE A 103 -1 N PHE A 102 O PHE A 317 SHEET 1 AA2 4 GLN A 52 GLU A 55 0 SHEET 2 AA2 4 ILE A 315 PHE A 328 -1 O LYS A 327 N LYS A 53 SHEET 3 AA2 4 GLY A 250 ASN A 261 1 N ILE A 254 O ASP A 318 SHEET 4 AA2 4 PRO A 271 ARG A 277 -1 O LYS A 272 N TYR A 257 SHEET 1 AA3 3 ILE A 58 VAL A 65 0 SHEET 2 AA3 3 THR A 189 PHE A 198 -1 O LEU A 191 N LYS A 64 SHEET 3 AA3 3 TYR A 203 ARG A 206 -1 O TYR A 203 N PHE A 198 SHEET 1 AA4 3 ILE A 58 VAL A 65 0 SHEET 2 AA4 3 THR A 189 PHE A 198 -1 O LEU A 191 N LYS A 64 SHEET 3 AA4 3 PHE A 229 ARG A 230 -1 O PHE A 229 N VAL A 190 SHEET 1 AA5 2 ALA A 69 GLU A 77 0 SHEET 2 AA5 2 MET A 80 PHE A 88 -1 O PHE A 88 N ALA A 69 SHEET 1 AA6 5 ILE A 147 VAL A 154 0 SHEET 2 AA6 5 LYS A 160 CYS A 168 -1 O SER A 165 N ILE A 147 SHEET 3 AA6 5 ASN A 107 CYS A 119 -1 N GLY A 117 O ALA A 166 SHEET 4 AA6 5 VAL A 304 PHE A 313 -1 O PHE A 313 N ASN A 107 SHEET 5 AA6 5 ASN A 292 GLU A 301 -1 N PHE A 293 O VAL A 312 SHEET 1 AA7 4 GLN B 52 GLU B 55 0 SHEET 2 AA7 4 VAL B 304 PHE B 328 -1 O GLY B 325 N GLU B 55 SHEET 3 AA7 4 GLY B 250 ASN B 261 1 N ILE B 254 O ASP B 318 SHEET 4 AA7 4 PRO B 271 ARG B 277 -1 O ARG B 276 N GLY B 253 SHEET 1 AA8 5 ILE B 147 VAL B 154 0 SHEET 2 AA8 5 LYS B 160 CYS B 168 -1 O THR B 161 N VAL B 153 SHEET 3 AA8 5 SER B 101 CYS B 119 -1 N GLY B 117 O ALA B 166 SHEET 4 AA8 5 VAL B 304 PHE B 328 -1 O PHE B 317 N PHE B 102 SHEET 5 AA8 5 ASN B 292 GLU B 301 -1 N PHE B 293 O VAL B 312 SHEET 1 AA9 3 VAL B 61 VAL B 65 0 SHEET 2 AA9 3 THR B 189 PHE B 198 -1 O LEU B 191 N LYS B 64 SHEET 3 AA9 3 TYR B 203 ARG B 206 -1 O TYR B 203 N PHE B 198 SHEET 1 AB1 3 VAL B 61 VAL B 65 0 SHEET 2 AB1 3 THR B 189 PHE B 198 -1 O LEU B 191 N LYS B 64 SHEET 3 AB1 3 PHE B 229 ARG B 230 -1 O PHE B 229 N VAL B 190 SHEET 1 AB2 2 ALA B 69 GLU B 77 0 SHEET 2 AB2 2 MET B 80 PHE B 88 -1 O PHE B 88 N ALA B 69 SHEET 1 AB3 3 GLN C 52 GLU C 55 0 SHEET 2 AB3 3 ILE C 315 PHE C 328 -1 O LYS C 327 N LYS C 53 SHEET 3 AB3 3 SER C 101 PHE C 103 -1 N PHE C 102 O PHE C 317 SHEET 1 AB4 4 GLN C 52 GLU C 55 0 SHEET 2 AB4 4 ILE C 315 PHE C 328 -1 O LYS C 327 N LYS C 53 SHEET 3 AB4 4 GLY C 250 ASN C 261 1 N CYS C 260 O GLY C 326 SHEET 4 AB4 4 HIS C 268 ARG C 277 -1 O LYS C 272 N TYR C 257 SHEET 1 AB5 3 ILE C 58 LYS C 66 0 SHEET 2 AB5 3 THR C 189 PHE C 198 -1 O ASP C 197 N ILE C 58 SHEET 3 AB5 3 TYR C 203 ARG C 206 -1 O TYR C 203 N PHE C 198 SHEET 1 AB6 3 ILE C 58 LYS C 66 0 SHEET 2 AB6 3 THR C 189 PHE C 198 -1 O ASP C 197 N ILE C 58 SHEET 3 AB6 3 PHE C 229 ARG C 230 -1 O PHE C 229 N VAL C 190 SHEET 1 AB7 2 ALA C 69 GLU C 77 0 SHEET 2 AB7 2 MET C 80 PHE C 88 -1 O LYS C 82 N ILE C 75 SHEET 1 AB8 5 ILE C 147 VAL C 154 0 SHEET 2 AB8 5 LYS C 160 CYS C 168 -1 O THR C 161 N VAL C 153 SHEET 3 AB8 5 ASN C 107 PRO C 120 -1 N CYS C 119 O VAL C 164 SHEET 4 AB8 5 VAL C 304 PHE C 313 -1 O PHE C 313 N ASN C 107 SHEET 5 AB8 5 ASN C 292 GLU C 301 -1 N PHE C 293 O VAL C 312 SSBOND 1 CYS A 119 CYS A 168 1555 1555 2.03 SSBOND 2 CYS A 129 CYS A 152 1555 1555 2.03 SSBOND 3 CYS A 135 CYS A 162 1555 1555 2.03 SSBOND 4 CYS A 216 CYS A 226 1555 1555 2.03 SSBOND 5 CYS A 260 CYS A 269 1555 1555 2.03 SSBOND 6 CYS B 119 CYS B 168 1555 1555 2.03 SSBOND 7 CYS B 129 CYS B 152 1555 1555 2.03 SSBOND 8 CYS B 135 CYS B 162 1555 1555 2.04 SSBOND 9 CYS B 216 CYS B 226 1555 1555 2.03 SSBOND 10 CYS B 260 CYS B 269 1555 1555 2.03 SSBOND 11 CYS C 119 CYS C 168 1555 1555 2.03 SSBOND 12 CYS C 129 CYS C 152 1555 1555 2.04 SSBOND 13 CYS C 135 CYS C 162 1555 1555 2.03 SSBOND 14 CYS C 216 CYS C 226 1555 1555 2.03 SSBOND 15 CYS C 260 CYS C 269 1555 1555 2.03 LINK ND2 ASN A 187 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 213 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN B 187 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 213 C1 NAG B 402 1555 1555 1.44 LINK ND2 ASN C 187 C1 NAG C 401 1555 1555 1.44 LINK ND2 ASN C 213 C1 NAG C 402 1555 1555 1.44 CISPEP 1 CYS A 168 PRO A 169 0 -1.17 CISPEP 2 CYS B 168 PRO B 169 0 -0.17 CISPEP 3 CYS C 168 PRO C 169 0 -3.36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000