HEADER RIBOSOMAL PROTEIN 28-JUN-23 8JVV TITLE CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN MKAL2_V1.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MKAL2_V1.1; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OB FOLD, RIBOSOMAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.YAGI,S.TAGAMI REVDAT 2 07-AUG-24 8JVV 1 JRNL REVDAT 1 03-JUL-24 8JVV 0 JRNL AUTH S.YAGI,S.TAGAMI JRNL TITL AN ANCESTRAL FOLD REVEALS THE EVOLUTIONARY LINK BETWEEN RNA JRNL TITL 2 POLYMERASE AND RIBOSOMAL PROTEINS. JRNL REF NAT COMMUN V. 15 5938 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39025855 JRNL DOI 10.1038/S41467-024-50013-9 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 51905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.290 REMARK 3 FREE R VALUE TEST SET COUNT : 3782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6750 - 6.8930 0.95 1765 144 0.1738 0.1687 REMARK 3 2 6.8930 - 5.4737 0.96 1798 143 0.1938 0.1923 REMARK 3 3 5.4737 - 4.7825 0.95 1791 134 0.1774 0.2159 REMARK 3 4 4.7825 - 4.3456 0.90 1682 120 0.1520 0.1911 REMARK 3 5 4.3456 - 4.0343 0.90 1674 137 0.1748 0.1832 REMARK 3 6 4.0343 - 3.7965 0.93 1725 136 0.2235 0.2511 REMARK 3 7 3.7965 - 3.6065 0.95 1798 143 0.2216 0.2538 REMARK 3 8 3.6065 - 3.4495 0.97 1787 147 0.2255 0.2410 REMARK 3 9 3.4495 - 3.3168 0.96 1779 147 0.2526 0.2959 REMARK 3 10 3.3168 - 3.2023 0.97 1832 129 0.2479 0.2526 REMARK 3 11 3.2023 - 3.1022 0.96 1779 145 0.2731 0.3114 REMARK 3 12 3.1022 - 3.0136 0.95 1763 148 0.2842 0.3273 REMARK 3 13 3.0136 - 2.9342 0.96 1825 147 0.2863 0.2894 REMARK 3 14 2.9342 - 2.8627 0.97 1809 137 0.2682 0.3061 REMARK 3 15 2.8627 - 2.7976 0.97 1796 134 0.2898 0.2975 REMARK 3 16 2.7976 - 2.7381 0.97 1819 147 0.2859 0.2778 REMARK 3 17 2.7381 - 2.6833 0.96 1796 125 0.2991 0.3869 REMARK 3 18 2.6833 - 2.6327 0.97 1834 148 0.3067 0.3043 REMARK 3 19 2.6327 - 2.5857 0.97 1784 135 0.3312 0.3859 REMARK 3 20 2.5857 - 2.5418 0.96 1821 133 0.3263 0.3672 REMARK 3 21 2.5418 - 2.5008 0.96 1826 158 0.3577 0.3819 REMARK 3 22 2.5008 - 2.4624 0.97 1770 142 0.3478 0.3576 REMARK 3 23 2.4624 - 2.4261 0.97 1809 140 0.3341 0.3778 REMARK 3 24 2.4261 - 2.3920 0.95 1764 136 0.3428 0.3836 REMARK 3 25 2.3920 - 2.3597 0.96 1760 145 0.3321 0.3767 REMARK 3 26 2.3597 - 2.3290 0.97 1870 149 0.3436 0.3570 REMARK 3 27 2.3290 - 2.3000 0.89 1667 133 0.3624 0.3304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4795 REMARK 3 ANGLE : 1.621 6469 REMARK 3 CHIRALITY : 0.590 763 REMARK 3 PLANARITY : 0.007 851 REMARK 3 DIHEDRAL : 34.463 1887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% JEFFAMIN ED-2001, 100MM HEPES REMARK 280 PH7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.67550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: J REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.30400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -47.67550 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 56.30400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 MET A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 MET B 3 REMARK 465 PRO B 4 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 MET C 3 REMARK 465 PRO C 4 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 MET D 3 REMARK 465 PRO D 4 REMARK 465 GLY E 1 REMARK 465 PRO E 2 REMARK 465 MET E 3 REMARK 465 PRO E 4 REMARK 465 GLY E 5 REMARK 465 GLY F 1 REMARK 465 PRO F 2 REMARK 465 MET F 3 REMARK 465 PRO F 4 REMARK 465 GLY G 1 REMARK 465 PRO G 2 REMARK 465 MET G 3 REMARK 465 PRO G 4 REMARK 465 GLY G 5 REMARK 465 LYS G 6 REMARK 465 GLY H 1 REMARK 465 PRO H 2 REMARK 465 MET H 3 REMARK 465 PRO H 4 REMARK 465 GLY H 5 REMARK 465 GLY I 1 REMARK 465 PRO I 2 REMARK 465 MET I 3 REMARK 465 PRO I 4 REMARK 465 GLY I 5 REMARK 465 LYS I 6 REMARK 465 GLY J 1 REMARK 465 PRO J 2 REMARK 465 MET J 3 REMARK 465 PRO J 4 REMARK 465 GLY J 5 REMARK 465 LYS J 6 REMARK 465 GLY K 1 REMARK 465 PRO K 2 REMARK 465 MET K 3 REMARK 465 PRO K 4 REMARK 465 GLY K 5 REMARK 465 LYS K 6 REMARK 465 GLY L 1 REMARK 465 PRO L 2 REMARK 465 MET L 3 REMARK 465 PRO L 4 REMARK 465 GLY L 5 REMARK 465 LYS L 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS J 45 O HOH J 101 1.55 REMARK 500 OE2 GLU K 14 NH2 ARG K 27 1.67 REMARK 500 OD1 ASP K 18 CD PRO K 19 1.73 REMARK 500 ND2 ASN A 22 O HOH A 101 1.82 REMARK 500 OD1 ASP H 18 O HOH H 101 1.82 REMARK 500 O ASP H 18 O HOH H 102 1.84 REMARK 500 NE ARG B 29 O HOH B 101 1.86 REMARK 500 O LEU I 37 O HOH I 101 1.89 REMARK 500 OE2 GLU H 14 NH2 ARG H 27 1.90 REMARK 500 C LEU I 37 O HOH I 101 1.90 REMARK 500 O VAL B 55 O HOH B 102 1.92 REMARK 500 CD LYS D 7 OE1 GLU D 51 1.92 REMARK 500 OE1 GLU K 35 O HOH K 101 1.92 REMARK 500 O ILE A 44 O HOH A 102 1.93 REMARK 500 OE2 GLU H 14 NE ARG H 27 1.93 REMARK 500 CG2 ILE I 38 O HOH I 101 1.94 REMARK 500 OD1 ASP L 18 O HOH L 101 1.96 REMARK 500 OE2 GLU A 34 NH2 ARG C 11 1.97 REMARK 500 O HOH F 108 O HOH F 111 1.97 REMARK 500 O ASN A 22 O HOH A 103 2.00 REMARK 500 O GLU H 31 O HOH H 103 2.01 REMARK 500 N PHE L 8 O HOH L 102 2.01 REMARK 500 O ASP F 18 O ARG F 21 2.01 REMARK 500 NZ LYS D 53 O HOH D 101 2.03 REMARK 500 O ASN B 22 O HOH B 103 2.04 REMARK 500 OE1 GLU L 14 NH2 ARG L 27 2.05 REMARK 500 N LEU K 37 O HOH K 102 2.05 REMARK 500 NH2 ARG K 11 O GLY K 47 2.08 REMARK 500 O HOH B 105 O HOH B 107 2.08 REMARK 500 NH1 ARG C 27 O HIS J 17 2.08 REMARK 500 O HOH L 105 O HOH L 109 2.09 REMARK 500 OE2 GLU B 51 O HOH B 104 2.10 REMARK 500 OD2 ASP B 32 O HOH B 105 2.11 REMARK 500 OD2 ASP F 18 O HOH F 101 2.11 REMARK 500 O LEU D 37 O HOH D 102 2.15 REMARK 500 O LYS B 7 O HOH B 106 2.15 REMARK 500 NH2 ARG C 21 O HOH C 101 2.19 REMARK 500 OE2 GLU H 14 CZ ARG H 27 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 108 O HOH F 102 1656 1.83 REMARK 500 OE2 GLU I 34 CD ARG L 21 1655 1.98 REMARK 500 OD1 ASN A 22 CA ASN C 22 2545 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 35 CD GLU E 35 OE1 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 95.61 76.27 REMARK 500 PRO A 19 -0.51 -59.92 REMARK 500 PRO D 19 -4.44 -56.87 REMARK 500 ALA H 20 48.53 -88.53 REMARK 500 PHE H 30 -143.49 -85.97 REMARK 500 VAL I 46 152.05 -46.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 115 DISTANCE = 6.99 ANGSTROMS DBREF 8JVV A 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV B 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV C 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV D 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV E 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV F 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV G 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV H 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV I 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV J 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV K 1 55 PDB 8JVV 8JVV 1 55 DBREF 8JVV L 1 55 PDB 8JVV 8JVV 1 55 SEQRES 1 A 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 A 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 A 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 A 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 A 55 LYS LYS VAL SEQRES 1 B 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 B 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 B 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 B 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 B 55 LYS LYS VAL SEQRES 1 C 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 C 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 C 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 C 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 C 55 LYS LYS VAL SEQRES 1 D 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 D 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 D 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 D 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 D 55 LYS LYS VAL SEQRES 1 E 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 E 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 E 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 E 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 E 55 LYS LYS VAL SEQRES 1 F 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 F 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 F 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 F 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 F 55 LYS LYS VAL SEQRES 1 G 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 G 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 G 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 G 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 G 55 LYS LYS VAL SEQRES 1 H 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 H 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 H 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 H 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 H 55 LYS LYS VAL SEQRES 1 I 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 I 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 I 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 I 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 I 55 LYS LYS VAL SEQRES 1 J 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 J 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 J 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 J 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 J 55 LYS LYS VAL SEQRES 1 K 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 K 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 K 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 K 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 K 55 LYS LYS VAL SEQRES 1 L 55 GLY PRO MET PRO GLY LYS LYS PHE VAL ALA ARG VAL VAL SEQRES 2 L 55 GLU LEU LEU HIS ASP PRO ALA ARG ASN ALA PRO VAL ALA SEQRES 3 L 55 ARG VAL ARG PHE GLU ASP GLY GLU GLU ARG LEU ILE LEU SEQRES 4 L 55 VAL PRO GLU GLY ILE LYS VAL GLY ASP VAL VAL GLU VAL SEQRES 5 L 55 LYS LYS VAL FORMUL 13 HOH *110(H2 O) SHEET 1 AA1 8 GLU A 35 LEU A 39 0 SHEET 2 AA1 8 VAL A 25 PHE A 30 -1 N ALA A 26 O ILE A 38 SHEET 3 AA1 8 VAL A 9 LEU A 16 -1 N VAL A 13 O ARG A 27 SHEET 4 AA1 8 VAL A 49 LYS A 54 -1 O VAL A 50 N ALA A 10 SHEET 5 AA1 8 VAL F 49 LYS F 54 -1 O GLU F 51 N LYS A 53 SHEET 6 AA1 8 VAL F 9 ASP F 18 -1 N ALA F 10 O VAL F 50 SHEET 7 AA1 8 ALA F 23 ARG F 29 -1 O VAL F 25 N LEU F 16 SHEET 8 AA1 8 GLU F 35 LEU F 39 -1 O ARG F 36 N VAL F 28 SHEET 1 AA2 8 GLU B 35 LEU B 39 0 SHEET 2 AA2 8 VAL B 25 PHE B 30 -1 N ALA B 26 O ILE B 38 SHEET 3 AA2 8 VAL B 9 LEU B 16 -1 N VAL B 13 O ARG B 27 SHEET 4 AA2 8 VAL B 49 LYS B 54 -1 O VAL B 50 N ALA B 10 SHEET 5 AA2 8 VAL K 49 LYS K 54 -1 O GLU K 51 N LYS B 53 SHEET 6 AA2 8 VAL K 9 LEU K 16 -1 N ALA K 10 O VAL K 50 SHEET 7 AA2 8 VAL K 25 ARG K 29 -1 O ARG K 29 N ARG K 11 SHEET 8 AA2 8 GLU K 35 LEU K 39 -1 O ILE K 38 N ALA K 26 SHEET 1 AA3 8 GLU C 35 LEU C 39 0 SHEET 2 AA3 8 VAL C 25 PHE C 30 -1 N ALA C 26 O ILE C 38 SHEET 3 AA3 8 VAL C 9 LEU C 16 -1 N VAL C 13 O ARG C 27 SHEET 4 AA3 8 VAL C 49 LYS C 54 -1 O VAL C 50 N ALA C 10 SHEET 5 AA3 8 VAL H 49 LYS H 54 -1 O GLU H 51 N LYS C 53 SHEET 6 AA3 8 VAL H 9 LEU H 16 -1 N ALA H 10 O VAL H 50 SHEET 7 AA3 8 VAL H 25 ARG H 29 -1 O ARG H 27 N VAL H 13 SHEET 8 AA3 8 GLU H 35 LEU H 39 -1 O ILE H 38 N ALA H 26 SHEET 1 AA4 8 GLU D 35 LEU D 39 0 SHEET 2 AA4 8 VAL D 25 ARG D 29 -1 N ALA D 26 O ILE D 38 SHEET 3 AA4 8 VAL D 9 LEU D 16 -1 N LEU D 16 O VAL D 25 SHEET 4 AA4 8 VAL D 49 LYS D 54 -1 O VAL D 50 N ALA D 10 SHEET 5 AA4 8 VAL E 49 LYS E 54 -1 O GLU E 51 N LYS D 53 SHEET 6 AA4 8 VAL E 9 LEU E 16 -1 N ALA E 10 O VAL E 50 SHEET 7 AA4 8 VAL E 25 PHE E 30 -1 O ARG E 27 N VAL E 13 SHEET 8 AA4 8 GLU E 35 LEU E 39 -1 O ARG E 36 N VAL E 28 SHEET 1 AA5 4 GLU G 35 LEU G 39 0 SHEET 2 AA5 4 VAL G 25 PHE G 30 -1 N ALA G 26 O ILE G 38 SHEET 3 AA5 4 VAL G 9 LEU G 16 -1 N GLU G 14 O ARG G 27 SHEET 4 AA5 4 VAL G 49 GLU G 51 -1 O VAL G 50 N ALA G 10 SHEET 1 AA6 4 GLU I 35 LEU I 39 0 SHEET 2 AA6 4 VAL I 25 PHE I 30 -1 N VAL I 28 O ARG I 36 SHEET 3 AA6 4 VAL I 9 LEU I 16 -1 N VAL I 13 O ARG I 27 SHEET 4 AA6 4 VAL I 49 GLU I 51 -1 O VAL I 50 N ALA I 10 SHEET 1 AA7 4 GLU J 35 LEU J 39 0 SHEET 2 AA7 4 VAL J 25 ARG J 29 -1 N ALA J 26 O ILE J 38 SHEET 3 AA7 4 VAL J 9 LEU J 16 -1 N GLU J 14 O ARG J 27 SHEET 4 AA7 4 VAL J 49 GLU J 51 -1 O VAL J 50 N ALA J 10 SHEET 1 AA8 4 GLU L 35 ILE L 38 0 SHEET 2 AA8 4 ALA L 23 PHE L 30 -1 N VAL L 28 O ARG L 36 SHEET 3 AA8 4 VAL L 9 ASP L 18 -1 N ASP L 18 O ALA L 23 SHEET 4 AA8 4 VAL L 49 GLU L 51 -1 O VAL L 50 N ALA L 10 CRYST1 56.304 95.351 64.460 90.00 114.10 90.00 P 1 21 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017761 0.000000 0.007943 0.00000 SCALE2 0.000000 0.010488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016994 0.00000