HEADER LIGASE 29-JUN-23 8JWS TITLE EPHD DOMAIN OF PHD FINGER PROTEIN 7 (PHF7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 7; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TESTIS DEVELOPMENT PROTEIN NYD-SP6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PHF7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS KEYWDS UBIQUITIN, RING LIGASE, EPHD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR I.BANG,H.S.LEE,H.-J.CHOI REVDAT 2 10-JAN-24 8JWS 1 JRNL REVDAT 1 20-DEC-23 8JWS 0 JRNL AUTH H.S.LEE,I.BANG,J.YOU,T.K.JEONG,C.R.KIM,M.HWANG,J.S.KIM, JRNL AUTH 2 S.H.BAEK,J.J.SONG,H.J.CHOI JRNL TITL MOLECULAR BASIS FOR PHF7-MEDIATED UBIQUITINATION OF HISTONE JRNL TITL 2 H3. JRNL REF GENES DEV. V. 37 984 2023 JRNL REFN ISSN 0890-9369 JRNL PMID 37993255 JRNL DOI 10.1101/GAD.350989.123 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 25414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0100 - 4.3100 0.95 2517 150 0.1638 0.1683 REMARK 3 2 4.3100 - 3.4200 0.97 2462 126 0.1639 0.1896 REMARK 3 3 3.4200 - 2.9900 0.97 2431 140 0.1898 0.2276 REMARK 3 4 2.9900 - 2.7100 0.96 2369 130 0.2095 0.2276 REMARK 3 5 2.7100 - 2.5200 0.96 2390 122 0.2107 0.3019 REMARK 3 6 2.5200 - 2.3700 0.98 2388 131 0.1968 0.1896 REMARK 3 7 2.3700 - 2.2500 0.97 2379 126 0.2463 0.2880 REMARK 3 8 2.2500 - 2.1500 0.98 2384 139 0.2726 0.3008 REMARK 3 9 2.1500 - 2.0700 0.98 2370 148 0.2218 0.2421 REMARK 3 10 2.0700 - 2.0000 0.98 2391 121 0.2343 0.2567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.666 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2877 REMARK 3 ANGLE : 1.234 3845 REMARK 3 CHIRALITY : 0.076 387 REMARK 3 PLANARITY : 0.009 513 REMARK 3 DIHEDRAL : 15.519 1135 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 30 THROUGH 146) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9998 28.6864 80.2446 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.0588 REMARK 3 T33: 0.0852 T12: 0.0133 REMARK 3 T13: -0.0029 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 3.6793 L22: 1.5382 REMARK 3 L33: 2.3563 L12: 0.7570 REMARK 3 L13: -0.7705 L23: -0.2597 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: 0.0185 S13: 0.0870 REMARK 3 S21: 0.0760 S22: -0.0302 S23: 0.0865 REMARK 3 S31: -0.0019 S32: 0.0298 S33: -0.0226 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 30 THROUGH 146) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1235 22.0077 53.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1888 REMARK 3 T33: 0.1413 T12: -0.0237 REMARK 3 T13: 0.0041 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 2.8904 L22: 1.3119 REMARK 3 L33: 2.3152 L12: -0.1698 REMARK 3 L13: 0.1393 L23: 0.2716 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.3455 S13: -0.2894 REMARK 3 S21: -0.0781 S22: -0.0115 S23: 0.0485 REMARK 3 S31: 0.0373 S32: -0.0173 S33: 0.0064 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 30 THROUGH 146) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0844 48.4798 61.0302 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1443 REMARK 3 T33: 0.1999 T12: -0.0238 REMARK 3 T13: -0.0141 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 2.4138 L22: 1.5591 REMARK 3 L33: 2.0881 L12: -0.6674 REMARK 3 L13: -0.7008 L23: 0.4119 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.3128 S13: 0.4069 REMARK 3 S21: -0.0299 S22: 0.0463 S23: 0.0205 REMARK 3 S31: -0.0789 S32: -0.1829 S33: -0.0707 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 30 through 43 or REMARK 3 resid 45 through 66 or resid 68 through REMARK 3 83 or resid 85 through 91 or resid 93 REMARK 3 through 95 or resid 97 through 102 or REMARK 3 resid 105 through 146 or resid 501 REMARK 3 through 503)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 30 through 43 or REMARK 3 resid 45 through 66 or resid 68 through REMARK 3 83 or resid 85 through 91 or resid 93 REMARK 3 through 95 or resid 97 through 102 or REMARK 3 resid 105 through 146 or resid 501 REMARK 3 through 503)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 30 through 43 or REMARK 3 resid 45 through 66 or resid 68 through REMARK 3 83 or resid 85 through 91 or resid 93 REMARK 3 through 95 or resid 97 through 102 or REMARK 3 resid 105 through 146 or resid 501 REMARK 3 through 503)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 31.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09503 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.52450 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: 4NN2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LICL, BICINE, PH 8.7, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.50700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.19800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.57250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.19800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.50700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.57250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 ILE A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 THR A 147 REMARK 465 GLN A 148 REMARK 465 ASN A 149 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 GLY B 25 REMARK 465 ILE B 26 REMARK 465 GLN B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 THR B 147 REMARK 465 GLN B 148 REMARK 465 ASN B 149 REMARK 465 GLY C 23 REMARK 465 PRO C 24 REMARK 465 GLY C 25 REMARK 465 ILE C 26 REMARK 465 GLN C 27 REMARK 465 SER C 28 REMARK 465 SER C 29 REMARK 465 THR C 147 REMARK 465 GLN C 148 REMARK 465 ASN C 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 133 56.09 -107.78 REMARK 500 PHE B 133 55.70 -106.83 REMARK 500 PHE C 133 57.30 -108.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 714 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 CYS A 36 SG 107.5 REMARK 620 3 HIS A 58 ND1 103.3 98.4 REMARK 620 4 CYS A 61 SG 117.6 114.3 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 98 SG REMARK 620 2 CYS A 101 SG 110.5 REMARK 620 3 HIS A 120 ND1 104.2 101.2 REMARK 620 4 CYS A 123 SG 112.7 114.6 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 110 SG REMARK 620 2 CYS A 115 SG 106.9 REMARK 620 3 CYS A 141 SG 117.5 121.1 REMARK 620 4 HIS A 144 ND1 112.2 103.2 94.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 33 SG REMARK 620 2 CYS B 36 SG 109.0 REMARK 620 3 HIS B 58 ND1 101.6 99.2 REMARK 620 4 CYS B 61 SG 114.1 114.7 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 98 SG REMARK 620 2 CYS B 101 SG 109.0 REMARK 620 3 HIS B 120 ND1 104.9 99.4 REMARK 620 4 CYS B 123 SG 115.7 112.3 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 110 SG REMARK 620 2 CYS B 115 SG 106.4 REMARK 620 3 CYS B 141 SG 115.2 120.8 REMARK 620 4 HIS B 144 ND1 110.0 101.9 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 33 SG REMARK 620 2 CYS C 36 SG 110.1 REMARK 620 3 HIS C 58 ND1 101.2 98.0 REMARK 620 4 CYS C 61 SG 116.8 114.6 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 98 SG REMARK 620 2 CYS C 101 SG 111.4 REMARK 620 3 HIS C 120 ND1 106.4 99.8 REMARK 620 4 CYS C 123 SG 112.9 111.7 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 110 SG REMARK 620 2 CYS C 115 SG 108.4 REMARK 620 3 CYS C 141 SG 116.6 119.8 REMARK 620 4 HIS C 144 ND1 108.9 100.1 101.0 REMARK 620 N 1 2 3 DBREF 8JWS A 28 149 UNP Q9DAG9 PHF7_MOUSE 28 149 DBREF 8JWS B 28 149 UNP Q9DAG9 PHF7_MOUSE 28 149 DBREF 8JWS C 28 149 UNP Q9DAG9 PHF7_MOUSE 28 149 SEQADV 8JWS GLY A 23 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS PRO A 24 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLY A 25 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS ILE A 26 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLN A 27 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLY B 23 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS PRO B 24 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLY B 25 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS ILE B 26 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLN B 27 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLY C 23 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS PRO C 24 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLY C 25 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS ILE C 26 UNP Q9DAG9 EXPRESSION TAG SEQADV 8JWS GLN C 27 UNP Q9DAG9 EXPRESSION TAG SEQRES 1 A 127 GLY PRO GLY ILE GLN SER SER SER PRO VAL CYS LEU LEU SEQRES 2 A 127 CYS LEU GLN GLU PRO GLY ASP PRO GLU LYS LEU GLY GLU SEQRES 3 A 127 PHE LEU GLN LYS ASP ASN LEU CYS VAL HIS TYR PHE CYS SEQRES 4 A 127 LEU ILE LEU SER SER ARG LEU PRO GLN LYS GLY GLN PRO SEQRES 5 A 127 ASN ARG GLY LEU HIS GLY PHE MET PRO GLU ASP ILE LYS SEQRES 6 A 127 ARG GLU ALA VAL ARG ALA SER LYS LYS ILE CYS PHE VAL SEQRES 7 A 127 CYS LYS LYS LYS GLY ALA ALA ILE ARG CYS GLN ASN ASP SEQRES 8 A 127 GLN CYS VAL GLN ASN PHE HIS LEU PRO CYS GLY GLN GLU SEQRES 9 A 127 ARG GLY CYS LEU SER GLN PHE PHE GLY GLU TYR LYS SER SEQRES 10 A 127 TYR CYS ARG LYS HIS ARG PRO THR GLN ASN SEQRES 1 B 127 GLY PRO GLY ILE GLN SER SER SER PRO VAL CYS LEU LEU SEQRES 2 B 127 CYS LEU GLN GLU PRO GLY ASP PRO GLU LYS LEU GLY GLU SEQRES 3 B 127 PHE LEU GLN LYS ASP ASN LEU CYS VAL HIS TYR PHE CYS SEQRES 4 B 127 LEU ILE LEU SER SER ARG LEU PRO GLN LYS GLY GLN PRO SEQRES 5 B 127 ASN ARG GLY LEU HIS GLY PHE MET PRO GLU ASP ILE LYS SEQRES 6 B 127 ARG GLU ALA VAL ARG ALA SER LYS LYS ILE CYS PHE VAL SEQRES 7 B 127 CYS LYS LYS LYS GLY ALA ALA ILE ARG CYS GLN ASN ASP SEQRES 8 B 127 GLN CYS VAL GLN ASN PHE HIS LEU PRO CYS GLY GLN GLU SEQRES 9 B 127 ARG GLY CYS LEU SER GLN PHE PHE GLY GLU TYR LYS SER SEQRES 10 B 127 TYR CYS ARG LYS HIS ARG PRO THR GLN ASN SEQRES 1 C 127 GLY PRO GLY ILE GLN SER SER SER PRO VAL CYS LEU LEU SEQRES 2 C 127 CYS LEU GLN GLU PRO GLY ASP PRO GLU LYS LEU GLY GLU SEQRES 3 C 127 PHE LEU GLN LYS ASP ASN LEU CYS VAL HIS TYR PHE CYS SEQRES 4 C 127 LEU ILE LEU SER SER ARG LEU PRO GLN LYS GLY GLN PRO SEQRES 5 C 127 ASN ARG GLY LEU HIS GLY PHE MET PRO GLU ASP ILE LYS SEQRES 6 C 127 ARG GLU ALA VAL ARG ALA SER LYS LYS ILE CYS PHE VAL SEQRES 7 C 127 CYS LYS LYS LYS GLY ALA ALA ILE ARG CYS GLN ASN ASP SEQRES 8 C 127 GLN CYS VAL GLN ASN PHE HIS LEU PRO CYS GLY GLN GLU SEQRES 9 C 127 ARG GLY CYS LEU SER GLN PHE PHE GLY GLU TYR LYS SER SEQRES 10 C 127 TYR CYS ARG LYS HIS ARG PRO THR GLN ASN HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET EDO A 504 4 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET EDO B 504 4 HET ZN C 501 1 HET ZN C 502 1 HET ZN C 503 1 HET EDO C 504 4 HET EDO C 505 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 9(ZN 2+) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 17 HOH *315(H2 O) HELIX 1 AA1 ASP A 42 GLY A 47 1 6 HELIX 2 AA2 TYR A 59 SER A 65 1 7 HELIX 3 AA3 MET A 82 SER A 94 1 13 HELIX 4 AA4 HIS A 120 ARG A 127 1 8 HELIX 5 AA5 CYS A 141 ARG A 145 5 5 HELIX 6 AA6 ASP B 42 GLY B 47 1 6 HELIX 7 AA7 TYR B 59 SER B 65 1 7 HELIX 8 AA8 MET B 82 LYS B 95 1 14 HELIX 9 AA9 HIS B 120 ARG B 127 1 8 HELIX 10 AB1 CYS B 141 ARG B 145 5 5 HELIX 11 AB2 ASP C 42 GLY C 47 1 6 HELIX 12 AB3 TYR C 59 SER C 65 1 7 HELIX 13 AB4 MET C 82 LYS C 95 1 14 HELIX 14 AB5 HIS C 120 ARG C 127 1 8 HELIX 15 AB6 CYS C 141 ARG C 145 5 5 SHEET 1 AA1 2 PHE A 49 LYS A 52 0 SHEET 2 AA1 2 LEU A 55 HIS A 58 -1 O VAL A 57 N LEU A 50 SHEET 1 AA2 2 ILE A 108 ARG A 109 0 SHEET 2 AA2 2 ASN A 118 PHE A 119 -1 O PHE A 119 N ILE A 108 SHEET 1 AA3 2 LEU A 130 SER A 131 0 SHEET 2 AA3 2 SER A 139 TYR A 140 -1 O TYR A 140 N LEU A 130 SHEET 1 AA4 2 PHE B 49 LYS B 52 0 SHEET 2 AA4 2 LEU B 55 HIS B 58 -1 O VAL B 57 N LEU B 50 SHEET 1 AA5 2 ILE B 108 ARG B 109 0 SHEET 2 AA5 2 ASN B 118 PHE B 119 -1 O PHE B 119 N ILE B 108 SHEET 1 AA6 2 LEU B 130 SER B 131 0 SHEET 2 AA6 2 SER B 139 TYR B 140 -1 O TYR B 140 N LEU B 130 SHEET 1 AA7 2 PHE C 49 LYS C 52 0 SHEET 2 AA7 2 LEU C 55 HIS C 58 -1 O VAL C 57 N LEU C 50 SHEET 1 AA8 2 ILE C 108 ARG C 109 0 SHEET 2 AA8 2 ASN C 118 PHE C 119 -1 O PHE C 119 N ILE C 108 SHEET 1 AA9 2 LEU C 130 SER C 131 0 SHEET 2 AA9 2 SER C 139 TYR C 140 -1 O TYR C 140 N LEU C 130 LINK SG CYS A 33 ZN L ZN A 501 1555 1555 2.37 LINK SG CYS A 36 ZN L ZN A 501 1555 1555 2.30 LINK ND1 HIS A 58 ZN L ZN A 501 1555 1555 2.06 LINK SG CYS A 61 ZN L ZN A 501 1555 1555 2.31 LINK SG CYS A 98 ZN L ZN A 502 1555 1555 2.36 LINK SG CYS A 101 ZN L ZN A 502 1555 1555 2.31 LINK SG CYS A 110 ZN L ZN A 503 1555 1555 2.32 LINK SG CYS A 115 ZN L ZN A 503 1555 1555 2.36 LINK ND1 HIS A 120 ZN L ZN A 502 1555 1555 2.14 LINK SG CYS A 123 ZN L ZN A 502 1555 1555 2.33 LINK SG CYS A 141 ZN L ZN A 503 1555 1555 2.48 LINK ND1 HIS A 144 ZN L ZN A 503 1555 1555 1.97 LINK SG CYS B 33 ZN L ZN B 501 1555 1555 2.37 LINK SG CYS B 36 ZN L ZN B 501 1555 1555 2.28 LINK ND1 HIS B 58 ZN L ZN B 501 1555 1555 2.11 LINK SG CYS B 61 ZN L ZN B 501 1555 1555 2.31 LINK SG CYS B 98 ZN L ZN B 502 1555 1555 2.35 LINK SG CYS B 101 ZN L ZN B 502 1555 1555 2.32 LINK SG CYS B 110 ZN L ZN B 503 1555 1555 2.34 LINK SG CYS B 115 ZN L ZN B 503 1555 1555 2.33 LINK ND1 HIS B 120 ZN L ZN B 502 1555 1555 2.17 LINK SG CYS B 123 ZN L ZN B 502 1555 1555 2.33 LINK SG CYS B 141 ZN L ZN B 503 1555 1555 2.33 LINK ND1 HIS B 144 ZN L ZN B 503 1555 1555 2.11 LINK SG CYS C 33 ZN L ZN C 501 1555 1555 2.37 LINK SG CYS C 36 ZN L ZN C 501 1555 1555 2.32 LINK ND1 HIS C 58 ZN L ZN C 501 1555 1555 2.11 LINK SG CYS C 61 ZN L ZN C 501 1555 1555 2.29 LINK SG CYS C 98 ZN L ZN C 502 1555 1555 2.34 LINK SG CYS C 101 ZN L ZN C 502 1555 1555 2.33 LINK SG CYS C 110 ZN L ZN C 503 1555 1555 2.44 LINK SG CYS C 115 ZN L ZN C 503 1555 1555 2.36 LINK ND1 HIS C 120 ZN L ZN C 502 1555 1555 2.15 LINK SG CYS C 123 ZN L ZN C 502 1555 1555 2.32 LINK SG CYS C 141 ZN L ZN C 503 1555 1555 2.32 LINK ND1 HIS C 144 ZN L ZN C 503 1555 1555 2.13 CRYST1 37.014 59.145 170.396 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005869 0.00000 MTRIX1 1 0.999957 -0.008346 -0.003982 0.66794 1 MTRIX2 1 -0.007550 -0.488101 -0.872755 106.31490 1 MTRIX3 1 0.005341 0.872747 -0.488143 67.26692 1 MTRIX1 2 0.999903 -0.000091 -0.013963 1.16298 1 MTRIX2 2 0.011971 -0.509139 0.860601 -6.32814 1 MTRIX3 2 -0.007188 -0.860684 -0.509088 126.79692 1