HEADER MOTOR PROTEIN 30-JUN-23 8JX6 TITLE DEEP-SEA HELICASE 9 (DSH9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEEP-SEA HELICASE 9; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HELICASE, DEEP-SEA, METAGENOME, SSDNA BINDING PROTEIN, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,Z.LIU,F.GUO REVDAT 2 29-MAY-24 8JX6 1 REMARK REVDAT 1 26-JUL-23 8JX6 0 JRNL AUTH L.WANG,Z.LIU,F.GUO JRNL TITL STRUCTURE OF DEEP-SEA HELICASE 9 (DSH9) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 60586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9900 - 5.7500 1.00 3113 167 0.1827 0.2322 REMARK 3 2 5.7500 - 4.5800 1.00 3013 152 0.1599 0.1864 REMARK 3 3 4.5800 - 4.0100 1.00 2953 150 0.1565 0.1890 REMARK 3 4 4.0100 - 3.6400 0.77 2281 121 0.1755 0.2071 REMARK 3 5 3.6400 - 3.3800 0.89 2592 132 0.1936 0.2312 REMARK 3 6 3.3800 - 3.1900 1.00 2916 163 0.2189 0.2381 REMARK 3 7 3.1900 - 3.0300 1.00 2898 137 0.2213 0.2640 REMARK 3 8 3.0300 - 2.9000 1.00 2927 143 0.2293 0.2346 REMARK 3 9 2.8900 - 2.7800 1.00 2919 145 0.2348 0.3022 REMARK 3 10 2.7800 - 2.6900 1.00 2889 159 0.2368 0.2916 REMARK 3 11 2.6900 - 2.6000 0.70 2029 98 0.2316 0.3023 REMARK 3 12 2.6000 - 2.5300 1.00 2869 157 0.2331 0.2738 REMARK 3 13 2.5300 - 2.4600 1.00 2882 155 0.2245 0.3038 REMARK 3 14 2.4600 - 2.4000 1.00 2884 154 0.2376 0.2745 REMARK 3 15 2.4000 - 2.3500 1.00 2885 140 0.2415 0.2978 REMARK 3 16 2.3500 - 2.3000 1.00 2881 154 0.2393 0.3166 REMARK 3 17 2.3000 - 2.2700 1.00 2042 109 0.2351 0.3154 REMARK 3 18 2.2400 - 2.2100 0.98 2028 111 0.2417 0.2707 REMARK 3 19 2.2100 - 2.1700 1.00 2898 143 0.2359 0.2934 REMARK 3 20 2.1700 - 2.1300 1.00 2875 154 0.2475 0.2835 REMARK 3 21 2.1300 - 2.1000 1.00 2825 143 0.2548 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7402 REMARK 3 ANGLE : 0.731 10010 REMARK 3 CHIRALITY : 0.046 1131 REMARK 3 PLANARITY : 0.004 1271 REMARK 3 DIHEDRAL : 5.256 979 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -22.9066 20.3730 -19.6876 REMARK 3 T TENSOR REMARK 3 T11: 0.1666 T22: 0.2469 REMARK 3 T33: 0.2742 T12: 0.0090 REMARK 3 T13: 0.0045 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.6242 L22: 2.1668 REMARK 3 L33: 1.3900 L12: 0.3516 REMARK 3 L13: 0.1772 L23: 0.9536 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.0599 S13: 0.0190 REMARK 3 S21: 0.0281 S22: -0.0729 S23: 0.2763 REMARK 3 S31: 0.0703 S32: -0.0870 S33: 0.0944 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -5.1381 -22.2590 -20.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.2455 REMARK 3 T33: 0.2382 T12: 0.0231 REMARK 3 T13: 0.0070 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.0425 L22: 2.1830 REMARK 3 L33: 1.2561 L12: 0.4789 REMARK 3 L13: -0.2785 L23: -0.2124 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0293 S13: 0.0116 REMARK 3 S21: 0.1648 S22: -0.0259 S23: -0.1401 REMARK 3 S31: 0.1095 S32: 0.0002 S33: 0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 5 through 74 or REMARK 3 resid 76 through 82 or resid 84 through REMARK 3 129 or (resid 130 and (name N or name CA REMARK 3 or name C or name O or name CB )) or REMARK 3 resid 131 or (resid 132 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 133 through 178 or resid 180 REMARK 3 through 189 or (resid 190 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 191 through 204 or (resid 205 REMARK 3 through 206 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 207 through 237 or resid 239 through 243 REMARK 3 or (resid 244 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG )) REMARK 3 or resid 245 through 246 or (resid 247 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 248 through 260 REMARK 3 or (resid 261 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 262 through 270 or resid 272 through 292 REMARK 3 or resid 294 through 306 or resid 308 REMARK 3 through 329 or resid 332 through 340 or REMARK 3 resid 342 or resid 344 through 428 or REMARK 3 resid 430 through 454)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 5 through 74 or REMARK 3 resid 76 through 81 or (resid 82 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 84 through REMARK 3 111 or resid 119 through 178 or resid 180 REMARK 3 through 202 or (resid 203 through 206 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 207 through 237 or REMARK 3 resid 239 through 250 or (resid 251 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 252 through 253 or REMARK 3 (resid 254 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 255 through 270 or resid 272 REMARK 3 through 292 or resid 294 through 306 or REMARK 3 resid 308 through 329 or resid 332 REMARK 3 through 340 or resid 342 or resid 344 REMARK 3 through 348 or (resid 349 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 350 through 379 or REMARK 3 (resid 380 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 381 or (resid 382 through 383 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 384 through 428 or REMARK 3 resid 430 through 454)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 04-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 49.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE; 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.40400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.35750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.41800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.35750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.40400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.41800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 112 REMARK 465 ASP A 113 REMARK 465 GLY A 114 REMARK 465 THR A 115 REMARK 465 ALA A 116 REMARK 465 ASP A 117 REMARK 465 ASN A 118 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 82 CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 GLU A 254 CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ARG A 349 CD NE CZ NH1 NH2 REMARK 470 ARG A 380 CD NE CZ NH1 NH2 REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 PHE B 130 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ASP B 190 CG OD1 OD2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 LYS B 244 CD CE NZ REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 LYS B 324 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 725 O HOH B 859 2.14 REMARK 500 O HOH B 670 O HOH B 905 2.16 REMARK 500 O GLU B 11 N ILE B 15 2.17 REMARK 500 O HOH A 867 O HOH A 873 2.18 REMARK 500 O HOH B 867 O HOH B 905 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 162 NZ LYS B 336 3454 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 10 CG GLU B 10 CD -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 223 CD - CE - NZ ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU B 176 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 174 34.94 -94.16 REMARK 500 GLN A 203 -8.93 68.29 REMARK 500 THR A 237 -147.21 48.46 REMARK 500 ILE A 329 38.12 19.79 REMARK 500 LYS A 331 -42.74 -147.53 REMARK 500 ASP A 447 -68.69 -105.91 REMARK 500 GLU B 10 -128.55 42.39 REMARK 500 TYR B 174 31.46 -95.50 REMARK 500 LEU B 177 82.83 46.03 REMARK 500 THR B 237 -19.54 -44.07 REMARK 500 ASP B 239 34.00 -78.00 REMARK 500 ASP B 447 -69.51 -105.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 9 GLU B 10 124.10 REMARK 500 LEU B 176 LEU B 177 103.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 931 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 304 O REMARK 620 2 THR B 304 OG1 69.8 REMARK 620 3 ASP B 305 O 71.5 76.4 REMARK 620 4 GLU B 392 O 97.5 105.4 167.7 REMARK 620 5 HOH B 647 O 53.2 122.9 88.6 80.2 REMARK 620 6 HOH B 676 O 135.6 153.9 103.6 80.2 83.0 REMARK 620 7 HOH B 741 O 136.9 74.2 77.8 114.5 155.3 80.3 REMARK 620 N 1 2 3 4 5 6 DBREF 8JX6 A -2 454 PDB 8JX6 8JX6 -2 454 DBREF 8JX6 B -2 454 PDB 8JX6 8JX6 -2 454 SEQRES 1 A 457 GLY SER HIS MET LYS HIS ASP LEU SER SER ALA THR GLU SEQRES 2 A 457 GLU GLN ARG TYR ILE PHE THR ASP PHE ILE LYS GLN ALA SEQRES 3 A 457 GLN LEU ALA LEU LYS GLY ASP SER ASP TYR GLU VAL PHE SEQRES 4 A 457 ALA ILE GLN GLY PHE ALA GLY SER GLY LYS THR TRP LEU SEQRES 5 A 457 SER ALA LEU ILE ILE ASP GLU LEU LEU GLU LEU GLY MET SEQRES 6 A 457 LYS VAL ALA VAL THR SER PRO THR HIS LYS ALA VAL ARG SEQRES 7 A 457 VAL SER LEU ASN MET LEU LYS ASN ASN GLY ILE ASP THR SEQRES 8 A 457 ASN SER PRO LEU MET TYR PRO GLY THR ILE HIS HIS PHE SEQRES 9 A 457 LEU ASN LEU LYS LEU ASP HIS GLY PHE ALA ASP ASP GLY SEQRES 10 A 457 THR ALA ASP ASN VAL THR THR LYS ALA LYS LEU VAL VAL SEQRES 11 A 457 ASN LYS PHE ASN GLU CYS LEU GLU TYR VAL ASP VAL LEU SEQRES 12 A 457 ILE VAL ASP GLU ALA SER MET VAL SER GLY GLU LEU TYR SEQRES 13 A 457 ASP HIS ALA LEU LYS THR LEU GLY ASP ARG CYS LYS ILE SEQRES 14 A 457 ILE LEU PHE ILE GLY ASP SER TYR GLN LEU LEU PRO VAL SEQRES 15 A 457 ASP ASP GLU ASP SER SER ILE PHE LEU LYS ASP ASP ILE SEQRES 16 A 457 PHE HIS TYR LYS LEU THR LYS VAL VAL ARG GLN ALA GLU SEQRES 17 A 457 ASP ASN ILE ILE ILE ALA LYS SER GLN GLU LEU ILE LYS SEQRES 18 A 457 ALA MET ASP GLN LYS THR TYR TYR PRO SER VAL ASN ASP SEQRES 19 A 457 TYR PHE VAL ASN ILE THR GLU ASP THR GLU GLY ILE LYS SEQRES 20 A 457 LEU LEU LYS SER ASN VAL GLU LEU PHE GLU LEU TYR PHE SEQRES 21 A 457 SER ASP PHE LYS ASP LYS MET THR GLY ALA TYR THR ASN SEQRES 22 A 457 LYS VAL VAL ASN GLN PHE ASN GLU TYR ILE ARG TYR THR SEQRES 23 A 457 LEU TYR GLN GLU THR LYS PHE ILE CYS ASP LYS ASP GLU SEQRES 24 A 457 LEU VAL PHE GLN GLU THR TYR THR ASP SER LYS GLY ASN SEQRES 25 A 457 ILE ILE VAL SER ASN GLY GLU ILE ILE GLU VAL ALA THR SEQRES 26 A 457 CYS LYS LEU THR THR ASP ILE ASP LYS PHE LYS ILE TRP SEQRES 27 A 457 LYS ILE VAL SER LYS LYS ASN GLU LEU GLY GLU CYS VAL SEQRES 28 A 457 ARG PHE ASN VAL LEU ASP PRO SER SER TYR ASN GLU PHE SEQRES 29 A 457 ASN ASP LEU LEU ASP LYS TYR LEU ALA ASP ALA LYS ILE SEQRES 30 A 457 ALA LYS GLY TYR ASP ARG SER LYS ALA TRP LYS LYS TYR SEQRES 31 A 457 PHE LYS LEU LYS GLU LYS TYR ALA LYS VAL ARG TYR ASN SEQRES 32 A 457 PHE SER SER THR ILE HIS LYS LEU GLN GLY SER THR TYR SEQRES 33 A 457 GLN ASN MET TYR PHE ASP MET ARG GLY LEU ASP TYR PHE SEQRES 34 A 457 TYR ARG MET ASN ARG ASP ASN VAL LEU ARG LEU VAL TYR SEQRES 35 A 457 VAL GLY ILE THR ARG ALA SER ASP GLN VAL PHE ILE LEU SEQRES 36 A 457 GLN ASP SEQRES 1 B 457 GLY SER HIS MET LYS HIS ASP LEU SER SER ALA THR GLU SEQRES 2 B 457 GLU GLN ARG TYR ILE PHE THR ASP PHE ILE LYS GLN ALA SEQRES 3 B 457 GLN LEU ALA LEU LYS GLY ASP SER ASP TYR GLU VAL PHE SEQRES 4 B 457 ALA ILE GLN GLY PHE ALA GLY SER GLY LYS THR TRP LEU SEQRES 5 B 457 SER ALA LEU ILE ILE ASP GLU LEU LEU GLU LEU GLY MET SEQRES 6 B 457 LYS VAL ALA VAL THR SER PRO THR HIS LYS ALA VAL ARG SEQRES 7 B 457 VAL SER LEU ASN MET LEU LYS ASN ASN GLY ILE ASP THR SEQRES 8 B 457 ASN SER PRO LEU MET TYR PRO GLY THR ILE HIS HIS PHE SEQRES 9 B 457 LEU ASN LEU LYS LEU ASP HIS GLY PHE ALA ASP ASP GLY SEQRES 10 B 457 THR ALA ASP ASN VAL THR THR LYS ALA LYS LEU VAL VAL SEQRES 11 B 457 ASN LYS PHE ASN GLU CYS LEU GLU TYR VAL ASP VAL LEU SEQRES 12 B 457 ILE VAL ASP GLU ALA SER MET VAL SER GLY GLU LEU TYR SEQRES 13 B 457 ASP HIS ALA LEU LYS THR LEU GLY ASP ARG CYS LYS ILE SEQRES 14 B 457 ILE LEU PHE ILE GLY ASP SER TYR GLN LEU LEU PRO VAL SEQRES 15 B 457 ASP ASP GLU ASP SER SER ILE PHE LEU LYS ASP ASP ILE SEQRES 16 B 457 PHE HIS TYR LYS LEU THR LYS VAL VAL ARG GLN ALA GLU SEQRES 17 B 457 ASP ASN ILE ILE ILE ALA LYS SER GLN GLU LEU ILE LYS SEQRES 18 B 457 ALA MET ASP GLN LYS THR TYR TYR PRO SER VAL ASN ASP SEQRES 19 B 457 TYR PHE VAL ASN ILE THR GLU ASP THR GLU GLY ILE LYS SEQRES 20 B 457 LEU LEU LYS SER ASN VAL GLU LEU PHE GLU LEU TYR PHE SEQRES 21 B 457 SER ASP PHE LYS ASP LYS MET THR GLY ALA TYR THR ASN SEQRES 22 B 457 LYS VAL VAL ASN GLN PHE ASN GLU TYR ILE ARG TYR THR SEQRES 23 B 457 LEU TYR GLN GLU THR LYS PHE ILE CYS ASP LYS ASP GLU SEQRES 24 B 457 LEU VAL PHE GLN GLU THR TYR THR ASP SER LYS GLY ASN SEQRES 25 B 457 ILE ILE VAL SER ASN GLY GLU ILE ILE GLU VAL ALA THR SEQRES 26 B 457 CYS LYS LEU THR THR ASP ILE ASP LYS PHE LYS ILE TRP SEQRES 27 B 457 LYS ILE VAL SER LYS LYS ASN GLU LEU GLY GLU CYS VAL SEQRES 28 B 457 ARG PHE ASN VAL LEU ASP PRO SER SER TYR ASN GLU PHE SEQRES 29 B 457 ASN ASP LEU LEU ASP LYS TYR LEU ALA ASP ALA LYS ILE SEQRES 30 B 457 ALA LYS GLY TYR ASP ARG SER LYS ALA TRP LYS LYS TYR SEQRES 31 B 457 PHE LYS LEU LYS GLU LYS TYR ALA LYS VAL ARG TYR ASN SEQRES 32 B 457 PHE SER SER THR ILE HIS LYS LEU GLN GLY SER THR TYR SEQRES 33 B 457 GLN ASN MET TYR PHE ASP MET ARG GLY LEU ASP TYR PHE SEQRES 34 B 457 TYR ARG MET ASN ARG ASP ASN VAL LEU ARG LEU VAL TYR SEQRES 35 B 457 VAL GLY ILE THR ARG ALA SER ASP GLN VAL PHE ILE LEU SEQRES 36 B 457 GLN ASP HET TLA A 501 10 HET TLA B 501 10 HET MG B 502 1 HETNAM TLA L(+)-TARTARIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 TLA 2(C4 H6 O6) FORMUL 5 MG MG 2+ FORMUL 6 HOH *655(H2 O) HELIX 1 AA1 ASP A 4 ALA A 8 5 5 HELIX 2 AA2 THR A 9 LYS A 28 1 20 HELIX 3 AA3 GLY A 45 LEU A 60 1 16 HELIX 4 AA4 THR A 70 ASN A 83 1 14 HELIX 5 AA5 ILE A 98 LEU A 102 1 5 HELIX 6 AA6 GLU A 144 VAL A 148 5 5 HELIX 7 AA7 SER A 149 THR A 159 1 11 HELIX 8 AA8 SER A 185 LYS A 189 5 5 HELIX 9 AA9 ASN A 207 GLN A 222 1 16 HELIX 10 AB1 SER A 228 VAL A 234 5 7 HELIX 11 AB2 SER A 248 ASP A 259 1 12 HELIX 12 AB3 THR A 269 GLN A 286 1 18 HELIX 13 AB4 SER A 357 LYS A 373 1 17 HELIX 14 AB5 TYR A 378 GLU A 392 1 15 HELIX 15 AB6 HIS A 406 GLN A 409 5 4 HELIX 16 AB7 GLY A 422 ASN A 430 1 9 HELIX 17 AB8 ASN A 430 THR A 443 1 14 HELIX 18 AB9 ASP B 4 ALA B 8 5 5 HELIX 19 AC1 THR B 9 LYS B 28 1 20 HELIX 20 AC2 GLY B 45 LEU B 60 1 16 HELIX 21 AC3 THR B 70 ASN B 84 1 15 HELIX 22 AC4 ILE B 98 LEU B 102 1 5 HELIX 23 AC5 GLU B 144 VAL B 148 5 5 HELIX 24 AC6 SER B 149 THR B 159 1 11 HELIX 25 AC7 SER B 185 LYS B 189 5 5 HELIX 26 AC8 VAL B 201 GLU B 205 5 5 HELIX 27 AC9 ASN B 207 LYS B 223 1 17 HELIX 28 AD1 SER B 228 VAL B 234 5 7 HELIX 29 AD2 SER B 248 ASP B 259 1 12 HELIX 30 AD3 THR B 269 GLN B 286 1 18 HELIX 31 AD4 SER B 357 LYS B 373 1 17 HELIX 32 AD5 TYR B 378 GLU B 392 1 15 HELIX 33 AD6 HIS B 406 GLN B 409 5 4 HELIX 34 AD7 GLY B 422 ASN B 430 1 9 HELIX 35 AD8 ASN B 430 THR B 443 1 14 SHEET 1 AA1 6 MET A 93 THR A 97 0 SHEET 2 AA1 6 VAL A 64 SER A 68 1 N VAL A 64 O TYR A 94 SHEET 3 AA1 6 VAL A 139 VAL A 142 1 O VAL A 139 N ALA A 65 SHEET 4 AA1 6 ILE A 166 GLY A 171 1 O LEU A 168 N LEU A 140 SHEET 5 AA1 6 VAL A 35 GLY A 40 1 N PHE A 36 O PHE A 169 SHEET 6 AA1 6 PHE A 193 LEU A 197 1 O TYR A 195 N ALA A 37 SHEET 1 AA2 2 LEU A 104 ASP A 107 0 SHEET 2 AA2 2 LYS A 124 VAL A 127 -1 O LYS A 124 N ASP A 107 SHEET 1 AA3 5 ILE A 243 LEU A 246 0 SHEET 2 AA3 5 ALA A 445 LEU A 452 1 O ILE A 451 N LEU A 246 SHEET 3 AA3 5 TYR A 413 ASP A 419 1 N MET A 416 O PHE A 450 SHEET 4 AA3 5 LYS A 263 ALA A 267 1 N MET A 264 O TYR A 417 SHEET 5 AA3 5 SER A 402 THR A 404 1 O SER A 403 N ALA A 267 SHEET 1 AA4 5 ARG A 349 LEU A 353 0 SHEET 2 AA4 5 PHE A 332 SER A 339 -1 N ILE A 337 O PHE A 350 SHEET 3 AA4 5 ILE A 317 ASP A 328 -1 N ALA A 321 O VAL A 338 SHEET 4 AA4 5 GLU A 296 PHE A 299 -1 N LEU A 297 O ILE A 318 SHEET 5 AA4 5 VAL A 397 TYR A 399 -1 O ARG A 398 N VAL A 298 SHEET 1 AA5 2 TYR A 303 THR A 304 0 SHEET 2 AA5 2 ILE A 310 VAL A 312 -1 O VAL A 312 N TYR A 303 SHEET 1 AA6 6 MET B 93 THR B 97 0 SHEET 2 AA6 6 VAL B 64 SER B 68 1 N VAL B 64 O TYR B 94 SHEET 3 AA6 6 VAL B 139 VAL B 142 1 O ILE B 141 N ALA B 65 SHEET 4 AA6 6 ILE B 166 GLY B 171 1 O LEU B 168 N LEU B 140 SHEET 5 AA6 6 VAL B 35 GLY B 40 1 N PHE B 36 O PHE B 169 SHEET 6 AA6 6 PHE B 193 LEU B 197 1 O TYR B 195 N ALA B 37 SHEET 1 AA7 2 LEU B 104 ASP B 107 0 SHEET 2 AA7 2 LYS B 124 VAL B 127 -1 O LYS B 124 N ASP B 107 SHEET 1 AA8 5 ILE B 243 LEU B 245 0 SHEET 2 AA8 5 ALA B 445 LEU B 452 1 O VAL B 449 N LYS B 244 SHEET 3 AA8 5 TYR B 413 ASP B 419 1 N MET B 416 O PHE B 450 SHEET 4 AA8 5 LYS B 263 ALA B 267 1 N GLY B 266 O ASP B 419 SHEET 5 AA8 5 SER B 402 THR B 404 1 O SER B 403 N THR B 265 SHEET 1 AA9 5 ARG B 349 LEU B 353 0 SHEET 2 AA9 5 LYS B 333 SER B 339 -1 N TRP B 335 O VAL B 352 SHEET 3 AA9 5 ILE B 317 THR B 327 -1 N LYS B 324 O LYS B 336 SHEET 4 AA9 5 GLU B 296 PHE B 299 -1 N LEU B 297 O ILE B 318 SHEET 5 AA9 5 VAL B 397 TYR B 399 -1 O ARG B 398 N VAL B 298 SHEET 1 AB1 2 TYR B 303 THR B 304 0 SHEET 2 AB1 2 ILE B 310 VAL B 312 -1 O VAL B 312 N TYR B 303 LINK O THR B 304 MG MG B 502 1555 1555 2.72 LINK OG1 THR B 304 MG MG B 502 1555 1555 2.82 LINK O ASP B 305 MG MG B 502 1555 1555 2.85 LINK O GLU B 392 MG MG B 502 1555 1555 2.67 LINK MG MG B 502 O HOH B 647 1555 1555 2.97 LINK MG MG B 502 O HOH B 676 1555 1555 2.77 LINK MG MG B 502 O HOH B 741 1555 1555 2.90 CRYST1 56.808 126.836 150.715 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006635 0.00000