HEADER SIGNALING PROTEIN 03-JUL-23 8JYE TITLE CRYSTAL STRUCTURE OF INTRACELLULAR B30.2 DOMAIN OF BTN3A1 AND BTN2A1 TITLE 2 IN COMPLEX WITH HMBPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUTYROPHILIN SUBFAMILY 2 MEMBER A1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BUTYROPHILIN SUBFAMILY 3 MEMBER A1; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTN2A1, BT2.1, BTF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: BTN3A1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BUTYROPHILIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.YUAN,Y.Y.YANG,X.LI,N.N.CAI,C.-C.CHEN,R.-T.GUO,Y.H.ZHANG REVDAT 4 18-OCT-23 8JYE 1 JRNL REVDAT 3 11-OCT-23 8JYE 1 JRNL REVDAT 2 20-SEP-23 8JYE 1 JRNL REVDAT 1 13-SEP-23 8JYE 0 JRNL AUTH L.YUAN,X.MA,Y.YANG,Y.QU,X.LI,X.ZHU,W.MA,J.DUAN,J.XUE,H.YANG, JRNL AUTH 2 J.W.HUANG,S.YI,M.ZHANG,N.CAI,L.ZHANG,Q.DING,K.LAI,C.LIU, JRNL AUTH 3 L.ZHANG,X.LIU,Y.YAO,S.ZHOU,X.LI,P.SHEN,Q.CHANG,S.R.MALWAL, JRNL AUTH 4 Y.HE,W.LI,C.CHEN,C.C.CHEN,E.OLDFIELD,R.T.GUO,Y.ZHANG JRNL TITL PHOSPHOANTIGENS GLUE BUTYROPHILIN 3A1 AND 2A1 TO ACTIVATE V JRNL TITL 2 GAMMA 9V DELTA 2 T CELLS. JRNL REF NATURE V. 621 840 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37674084 JRNL DOI 10.1038/S41586-023-06525-3 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 65335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6102 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6393 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5856 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8669 ; 1.738 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13581 ; 1.291 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 761 ; 8.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 361 ;29.380 ;20.693 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1019 ;14.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;19.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7080 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8JYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97883 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 20.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZXK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42% PEG200, 0.1 M HEPES PH7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.66750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.33375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.00125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 310 REMARK 465 ALA A 311 REMARK 465 GLY A 312 REMARK 465 ALA A 313 REMARK 465 GLY A 314 REMARK 465 ALA A 315 REMARK 465 GLU A 316 REMARK 465 GLU A 317 REMARK 465 LEU A 318 REMARK 465 ARG A 319 REMARK 465 TRP A 320 REMARK 465 ARG A 321 REMARK 465 GLY A 522 REMARK 465 THR A 523 REMARK 465 HIS A 524 REMARK 465 GLN A 525 REMARK 465 SER A 526 REMARK 465 LEU A 527 REMARK 465 GLY B 310 REMARK 465 ALA B 311 REMARK 465 GLY B 312 REMARK 465 ALA B 313 REMARK 465 GLY B 314 REMARK 465 ALA B 315 REMARK 465 GLU B 316 REMARK 465 GLU B 317 REMARK 465 LEU B 318 REMARK 465 ARG B 319 REMARK 465 TRP B 320 REMARK 465 ARG B 321 REMARK 465 GLY B 522 REMARK 465 THR B 523 REMARK 465 HIS B 524 REMARK 465 GLN B 525 REMARK 465 SER B 526 REMARK 465 LEU B 527 REMARK 465 MET C 296 REMARK 465 GLY C 297 REMARK 465 ALA C 298 REMARK 465 TYR C 299 REMARK 465 ASN C 300 REMARK 465 GLU C 301 REMARK 465 TRP C 302 REMARK 465 LYS C 303 REMARK 465 GLU C 485 REMARK 465 HIS C 486 REMARK 465 HIS C 487 REMARK 465 HIS C 488 REMARK 465 HIS C 489 REMARK 465 HIS C 490 REMARK 465 HIS C 491 REMARK 465 MET D 296 REMARK 465 GLY D 297 REMARK 465 ALA D 298 REMARK 465 TYR D 299 REMARK 465 ASN D 300 REMARK 465 GLU D 301 REMARK 465 TRP D 302 REMARK 465 LYS D 303 REMARK 465 LYS D 304 REMARK 465 ALA D 483 REMARK 465 LEU D 484 REMARK 465 GLU D 485 REMARK 465 HIS D 486 REMARK 465 HIS D 487 REMARK 465 HIS D 488 REMARK 465 HIS D 489 REMARK 465 HIS D 490 REMARK 465 HIS D 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 320 ND2 REMARK 470 GLN C 333 NE2 REMARK 470 ASN D 320 ND2 REMARK 470 GLN D 333 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR C 438 O HOH C 601 2.08 REMARK 500 O THR B 510 O HOH B 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 352 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 469 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR C 352 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR C 352 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 434 41.18 38.60 REMARK 500 SER A 481 -40.78 74.19 REMARK 500 ASP A 494 18.98 51.77 REMARK 500 HIS B 357 32.14 -97.44 REMARK 500 ASP B 364 57.58 -104.49 REMARK 500 SER B 481 -42.76 75.85 REMARK 500 SER C 326 157.96 -45.17 REMARK 500 ASP C 343 58.66 -90.45 REMARK 500 TRP C 350 -59.75 -124.11 REMARK 500 TYR C 352 59.64 -90.16 REMARK 500 ASN C 445 107.67 -59.37 REMARK 500 HIS C 453 149.76 -173.25 REMARK 500 PRO D 321 -19.14 -48.71 REMARK 500 ASP D 343 57.01 -94.98 REMARK 500 TRP D 350 -64.66 -124.39 REMARK 500 TRP D 377 145.15 -176.82 REMARK 500 ASP D 457 56.76 38.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 816 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 817 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B 822 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH C 690 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH C 691 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH C 692 DISTANCE = 9.50 ANGSTROMS DBREF 8JYE A 316 527 UNP Q7KYR7 BT2A1_HUMAN 316 527 DBREF 8JYE B 316 527 UNP Q7KYR7 BT2A1_HUMAN 316 527 DBREF 8JYE C 298 483 UNP O00481 BT3A1_HUMAN 328 513 DBREF 8JYE D 298 483 UNP O00481 BT3A1_HUMAN 328 513 SEQADV 8JYE GLY A 310 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE ALA A 311 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE GLY A 312 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE ALA A 313 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE GLY A 314 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE ALA A 315 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE GLY B 310 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE ALA B 311 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE GLY B 312 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE ALA B 313 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE GLY B 314 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE ALA B 315 UNP Q7KYR7 EXPRESSION TAG SEQADV 8JYE MET C 296 UNP O00481 EXPRESSION TAG SEQADV 8JYE GLY C 297 UNP O00481 EXPRESSION TAG SEQADV 8JYE LEU C 484 UNP O00481 EXPRESSION TAG SEQADV 8JYE GLU C 485 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS C 486 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS C 487 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS C 488 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS C 489 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS C 490 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS C 491 UNP O00481 EXPRESSION TAG SEQADV 8JYE MET D 296 UNP O00481 EXPRESSION TAG SEQADV 8JYE GLY D 297 UNP O00481 EXPRESSION TAG SEQADV 8JYE LEU D 484 UNP O00481 EXPRESSION TAG SEQADV 8JYE GLU D 485 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS D 486 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS D 487 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS D 488 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS D 489 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS D 490 UNP O00481 EXPRESSION TAG SEQADV 8JYE HIS D 491 UNP O00481 EXPRESSION TAG SEQRES 1 A 218 GLY ALA GLY ALA GLY ALA GLU GLU LEU ARG TRP ARG ARG SEQRES 2 A 218 THR PHE LEU HIS ALA VAL ASP VAL VAL LEU ASP PRO ASP SEQRES 3 A 218 THR ALA HIS PRO ASP LEU PHE LEU SER GLU ASP ARG ARG SEQRES 4 A 218 SER VAL ARG ARG CYS PRO PHE ARG HIS LEU GLY GLU SER SEQRES 5 A 218 VAL PRO ASP ASN PRO GLU ARG PHE ASP SER GLN PRO CYS SEQRES 6 A 218 VAL LEU GLY ARG GLU SER PHE ALA SER GLY LYS HIS TYR SEQRES 7 A 218 TRP GLU VAL GLU VAL GLU ASN VAL ILE GLU TRP THR VAL SEQRES 8 A 218 GLY VAL CYS ARG ASP SER VAL GLU ARG LYS GLY GLU VAL SEQRES 9 A 218 LEU LEU ILE PRO GLN ASN GLY PHE TRP THR LEU GLU MET SEQRES 10 A 218 HIS LYS GLY GLN TYR ARG ALA VAL SER SER PRO ASP ARG SEQRES 11 A 218 ILE LEU PRO LEU LYS GLU SER LEU CYS ARG VAL GLY VAL SEQRES 12 A 218 PHE LEU ASP TYR GLU ALA GLY ASP VAL SER PHE TYR ASN SEQRES 13 A 218 MET ARG ASP ARG SER HIS ILE TYR THR CYS PRO ARG SER SEQRES 14 A 218 ALA PHE SER VAL PRO VAL ARG PRO PHE PHE ARG LEU GLY SEQRES 15 A 218 CYS GLU ASP SER PRO ILE PHE ILE CYS PRO ALA LEU THR SEQRES 16 A 218 GLY ALA ASN GLY VAL THR VAL PRO GLU GLU GLY LEU THR SEQRES 17 A 218 LEU HIS ARG VAL GLY THR HIS GLN SER LEU SEQRES 1 B 218 GLY ALA GLY ALA GLY ALA GLU GLU LEU ARG TRP ARG ARG SEQRES 2 B 218 THR PHE LEU HIS ALA VAL ASP VAL VAL LEU ASP PRO ASP SEQRES 3 B 218 THR ALA HIS PRO ASP LEU PHE LEU SER GLU ASP ARG ARG SEQRES 4 B 218 SER VAL ARG ARG CYS PRO PHE ARG HIS LEU GLY GLU SER SEQRES 5 B 218 VAL PRO ASP ASN PRO GLU ARG PHE ASP SER GLN PRO CYS SEQRES 6 B 218 VAL LEU GLY ARG GLU SER PHE ALA SER GLY LYS HIS TYR SEQRES 7 B 218 TRP GLU VAL GLU VAL GLU ASN VAL ILE GLU TRP THR VAL SEQRES 8 B 218 GLY VAL CYS ARG ASP SER VAL GLU ARG LYS GLY GLU VAL SEQRES 9 B 218 LEU LEU ILE PRO GLN ASN GLY PHE TRP THR LEU GLU MET SEQRES 10 B 218 HIS LYS GLY GLN TYR ARG ALA VAL SER SER PRO ASP ARG SEQRES 11 B 218 ILE LEU PRO LEU LYS GLU SER LEU CYS ARG VAL GLY VAL SEQRES 12 B 218 PHE LEU ASP TYR GLU ALA GLY ASP VAL SER PHE TYR ASN SEQRES 13 B 218 MET ARG ASP ARG SER HIS ILE TYR THR CYS PRO ARG SER SEQRES 14 B 218 ALA PHE SER VAL PRO VAL ARG PRO PHE PHE ARG LEU GLY SEQRES 15 B 218 CYS GLU ASP SER PRO ILE PHE ILE CYS PRO ALA LEU THR SEQRES 16 B 218 GLY ALA ASN GLY VAL THR VAL PRO GLU GLU GLY LEU THR SEQRES 17 B 218 LEU HIS ARG VAL GLY THR HIS GLN SER LEU SEQRES 1 C 196 MET GLY ALA TYR ASN GLU TRP LYS LYS ALA LEU PHE LYS SEQRES 2 C 196 PRO ALA ASP VAL ILE LEU ASP PRO LYS THR ALA ASN PRO SEQRES 3 C 196 ILE LEU LEU VAL SER GLU ASP GLN ARG SER VAL GLN ARG SEQRES 4 C 196 ALA LYS GLU PRO GLN ASP LEU PRO ASP ASN PRO GLU ARG SEQRES 5 C 196 PHE ASN TRP HIS TYR CYS VAL LEU GLY CYS GLU SER PHE SEQRES 6 C 196 ILE SER GLY ARG HIS TYR TRP GLU VAL GLU VAL GLY ASP SEQRES 7 C 196 ARG LYS GLU TRP HIS ILE GLY VAL CYS SER LYS ASN VAL SEQRES 8 C 196 GLN ARG LYS GLY TRP VAL LYS MET THR PRO GLU ASN GLY SEQRES 9 C 196 PHE TRP THR MET GLY LEU THR ASP GLY ASN LYS TYR ARG SEQRES 10 C 196 THR LEU THR GLU PRO ARG THR ASN LEU LYS LEU PRO LYS SEQRES 11 C 196 PRO PRO LYS LYS VAL GLY VAL PHE LEU ASP TYR GLU THR SEQRES 12 C 196 GLY ASP ILE SER PHE TYR ASN ALA VAL ASP GLY SER HIS SEQRES 13 C 196 ILE HIS THR PHE LEU ASP VAL SER PHE SER GLU ALA LEU SEQRES 14 C 196 TYR PRO VAL PHE ARG ILE LEU THR LEU GLU PRO THR ALA SEQRES 15 C 196 LEU THR ILE CYS PRO ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 16 C 196 HIS SEQRES 1 D 196 MET GLY ALA TYR ASN GLU TRP LYS LYS ALA LEU PHE LYS SEQRES 2 D 196 PRO ALA ASP VAL ILE LEU ASP PRO LYS THR ALA ASN PRO SEQRES 3 D 196 ILE LEU LEU VAL SER GLU ASP GLN ARG SER VAL GLN ARG SEQRES 4 D 196 ALA LYS GLU PRO GLN ASP LEU PRO ASP ASN PRO GLU ARG SEQRES 5 D 196 PHE ASN TRP HIS TYR CYS VAL LEU GLY CYS GLU SER PHE SEQRES 6 D 196 ILE SER GLY ARG HIS TYR TRP GLU VAL GLU VAL GLY ASP SEQRES 7 D 196 ARG LYS GLU TRP HIS ILE GLY VAL CYS SER LYS ASN VAL SEQRES 8 D 196 GLN ARG LYS GLY TRP VAL LYS MET THR PRO GLU ASN GLY SEQRES 9 D 196 PHE TRP THR MET GLY LEU THR ASP GLY ASN LYS TYR ARG SEQRES 10 D 196 THR LEU THR GLU PRO ARG THR ASN LEU LYS LEU PRO LYS SEQRES 11 D 196 PRO PRO LYS LYS VAL GLY VAL PHE LEU ASP TYR GLU THR SEQRES 12 D 196 GLY ASP ILE SER PHE TYR ASN ALA VAL ASP GLY SER HIS SEQRES 13 D 196 ILE HIS THR PHE LEU ASP VAL SER PHE SER GLU ALA LEU SEQRES 14 D 196 TYR PRO VAL PHE ARG ILE LEU THR LEU GLU PRO THR ALA SEQRES 15 D 196 LEU THR ILE CYS PRO ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 16 D 196 HIS HET PEG A 601 7 HET PEG A 602 7 HET EDO A 603 4 HET PEG B 601 7 HET PEG B 602 7 HET EDO B 603 4 HET EDO B 604 4 HET EDO C 501 4 HET 1PE C 502 16 HET PGE C 503 10 HET H6P C 504 15 HET H6P D 501 15 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM H6P (2E)-4-HYDROXY-3-METHYLBUT-2-EN-1-YL TRIHYDROGEN HETNAM 2 H6P DIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 5 PEG 4(C4 H10 O3) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 13 1PE C10 H22 O6 FORMUL 14 PGE C6 H14 O4 FORMUL 15 H6P 2(C5 H12 O8 P2) FORMUL 17 HOH *394(H2 O) HELIX 1 AA1 ASP A 333 ALA A 337 5 5 HELIX 2 AA2 ILE A 416 ASN A 419 5 4 HELIX 3 AA3 ASP B 333 ALA B 337 5 5 HELIX 4 AA4 ILE B 416 ASN B 419 5 4 HELIX 5 AA5 GLU B 457 GLY B 459 5 3 HELIX 6 AA6 THR C 395 ASN C 398 5 4 HELIX 7 AA7 ASP D 315 ALA D 319 5 5 HELIX 8 AA8 THR D 395 ASN D 398 5 4 SHEET 1 AA110 LEU A 341 LEU A 343 0 SHEET 2 AA110 SER A 349 ARG A 352 -1 O ARG A 351 N PHE A 342 SHEET 3 AA110 ILE A 497 ILE A 499 -1 O ILE A 497 N VAL A 350 SHEET 4 AA110 LYS A 385 GLU A 391 -1 N GLU A 391 O PHE A 498 SHEET 5 AA110 LEU A 325 ALA A 327 1 N HIS A 326 O LYS A 385 SHEET 6 AA110 LEU B 325 ALA B 327 -1 O ALA B 327 N LEU A 325 SHEET 7 AA110 LYS B 385 GLU B 391 1 O LYS B 385 N HIS B 326 SHEET 8 AA110 ILE B 497 ILE B 499 -1 O PHE B 498 N GLU B 391 SHEET 9 AA110 SER B 349 ARG B 352 -1 N VAL B 350 O ILE B 497 SHEET 10 AA110 LEU B 341 LEU B 343 -1 N PHE B 342 O ARG B 351 SHEET 1 AA212 LEU A 516 THR A 517 0 SHEET 2 AA212 SER B 470 THR B 474 -1 O THR B 474 N LEU A 516 SHEET 3 AA212 ASP B 460 ASN B 465 -1 N PHE B 463 O ILE B 472 SHEET 4 AA212 ARG B 449 ASP B 455 -1 N PHE B 453 O SER B 462 SHEET 5 AA212 LYS B 385 GLU B 391 -1 N HIS B 386 O LEU B 454 SHEET 6 AA212 LEU B 325 ALA B 327 1 N HIS B 326 O LYS B 385 SHEET 7 AA212 LEU A 325 ALA A 327 -1 N LEU A 325 O ALA B 327 SHEET 8 AA212 LYS A 385 GLU A 391 1 O LYS A 385 N HIS A 326 SHEET 9 AA212 ARG A 449 ASP A 455 -1 O LEU A 454 N HIS A 386 SHEET 10 AA212 ASP A 460 ASN A 465 -1 O SER A 462 N PHE A 453 SHEET 11 AA212 SER A 470 THR A 474 -1 O ILE A 472 N PHE A 463 SHEET 12 AA212 LEU B 516 THR B 517 -1 O LEU B 516 N THR A 474 SHEET 1 AA3 5 CYS A 374 LEU A 376 0 SHEET 2 AA3 5 VAL A 484 LEU A 490 -1 O PHE A 488 N VAL A 375 SHEET 3 AA3 5 TRP A 398 ARG A 404 -1 N THR A 399 O ARG A 489 SHEET 4 AA3 5 PHE A 421 HIS A 427 -1 O LEU A 424 N VAL A 400 SHEET 5 AA3 5 GLN A 430 ALA A 433 -1 O ARG A 432 N GLU A 425 SHEET 1 AA4 6 CYS B 374 LEU B 376 0 SHEET 2 AA4 6 VAL B 484 LEU B 490 -1 O PHE B 488 N VAL B 375 SHEET 3 AA4 6 TRP B 398 ARG B 404 -1 N THR B 399 O ARG B 489 SHEET 4 AA4 6 PHE B 421 HIS B 427 -1 O TRP B 422 N VAL B 402 SHEET 5 AA4 6 GLN B 430 ALA B 433 -1 O ARG B 432 N GLU B 425 SHEET 6 AA4 6 ILE B 440 LEU B 441 -1 O LEU B 441 N TYR B 431 SHEET 1 AA5 5 LYS C 308 PRO C 309 0 SHEET 2 AA5 5 ARG C 364 GLU C 370 1 O ARG C 364 N LYS C 308 SHEET 3 AA5 5 LEU C 478 CYS C 481 -1 O THR C 479 N GLU C 370 SHEET 4 AA5 5 SER C 331 ARG C 334 -1 N VAL C 332 O LEU C 478 SHEET 5 AA5 5 LEU C 323 VAL C 325 -1 N LEU C 324 O GLN C 333 SHEET 1 AA6 5 LYS C 308 PRO C 309 0 SHEET 2 AA6 5 ARG C 364 GLU C 370 1 O ARG C 364 N LYS C 308 SHEET 3 AA6 5 LYS C 429 ASP C 435 -1 O VAL C 432 N TRP C 367 SHEET 4 AA6 5 ASP C 440 ASN C 445 -1 O TYR C 444 N GLY C 431 SHEET 5 AA6 5 HIS C 451 PHE C 455 -1 O ILE C 452 N PHE C 443 SHEET 1 AA7 6 CYS C 353 LEU C 355 0 SHEET 2 AA7 6 LEU C 464 ARG C 469 -1 O PHE C 468 N VAL C 354 SHEET 3 AA7 6 TRP C 377 SER C 383 -1 N CYS C 382 O TYR C 465 SHEET 4 AA7 6 PHE C 400 THR C 406 -1 O TRP C 401 N VAL C 381 SHEET 5 AA7 6 LYS C 410 THR C 413 -1 O ARG C 412 N GLY C 404 SHEET 6 AA7 6 THR C 419 ASN C 420 -1 O THR C 419 N THR C 413 SHEET 1 AA8 5 LYS D 308 PRO D 309 0 SHEET 2 AA8 5 ARG D 364 GLU D 370 1 O ARG D 364 N LYS D 308 SHEET 3 AA8 5 LEU D 478 ILE D 480 -1 O THR D 479 N GLU D 370 SHEET 4 AA8 5 SER D 331 ARG D 334 -1 N VAL D 332 O LEU D 478 SHEET 5 AA8 5 LEU D 323 VAL D 325 -1 N LEU D 324 O GLN D 333 SHEET 1 AA9 5 LYS D 308 PRO D 309 0 SHEET 2 AA9 5 ARG D 364 GLU D 370 1 O ARG D 364 N LYS D 308 SHEET 3 AA9 5 LYS D 429 ASP D 435 -1 O LEU D 434 N HIS D 365 SHEET 4 AA9 5 ASP D 440 ASN D 445 -1 O TYR D 444 N GLY D 431 SHEET 5 AA9 5 HIS D 451 PHE D 455 -1 O PHE D 455 N ILE D 441 SHEET 1 AB1 6 CYS D 353 LEU D 355 0 SHEET 2 AB1 6 LEU D 464 ARG D 469 -1 O PHE D 468 N VAL D 354 SHEET 3 AB1 6 TRP D 377 SER D 383 -1 N CYS D 382 O TYR D 465 SHEET 4 AB1 6 PHE D 400 THR D 406 -1 O TRP D 401 N VAL D 381 SHEET 5 AB1 6 LYS D 410 THR D 413 -1 O ARG D 412 N GLY D 404 SHEET 6 AB1 6 THR D 419 LEU D 421 -1 O LEU D 421 N TYR D 411 CISPEP 1 GLU C 416 PRO C 417 0 -4.64 CISPEP 2 GLU D 416 PRO D 417 0 -2.18 CRYST1 89.823 89.823 169.335 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005905 0.00000