HEADER CHAPERONE 05-JUL-23 8JZD TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI NARJ IN COMPLEX WITH THE SIGNAL TITLE 2 PEPTIDE OF E. COLI NARG COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRATE REDUCTASE MOLYBDENUM COFACTOR ASSEMBLY CHAPERONE COMPND 3 NARJ; COMPND 4 CHAIN: A, C; COMPND 5 SYNONYM: REDOX ENZYME MATURATION PROTEIN NARJ; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RESPIRATORY NITRATE REDUCTASE 1 ALPHA CHAIN; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: SIGNAL PEPTIDE; COMPND 11 SYNONYM: NITRATE REDUCTASE A SUBUNIT ALPHA,QUINOL-NITRATE COMPND 12 OXIDOREDUCTASE SUBUNIT ALPHA; COMPND 13 EC: 1.7.5.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: NARJ, B1226, JW1217; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 10 ORGANISM_TAXID: 83333 KEYWDS REDOX ENZYME MATURATION PROTEIN, CHAPERONE, NARJ SUBFAMILY, SIGNAL KEYWDS 2 PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR W.S.SONG,J.H.KIM,B.NAMGUNG,H.Y.CHO,H.B.OH,S.I.YOON REVDAT 1 15-MAY-24 8JZD 0 JRNL AUTH W.S.SONG,J.H.KIM,B.NAMGUNG,H.Y.CHO,H.SHIN,H.B.OH,N.C.HA, JRNL AUTH 2 S.I.YOON JRNL TITL COMPLEMENTARY HYDROPHOBIC INTERACTION OF THE REDOX ENZYME JRNL TITL 2 MATURATION PROTEIN NARJ WITH THE SIGNAL PEPTIDE OF THE JRNL TITL 3 RESPIRATORY NITRATE REDUCTASE NARG. JRNL REF INT.J.BIOL.MACROMOL. V. 262 29620 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 38262549 JRNL DOI 10.1016/J.IJBIOMAC.2024.129620 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 17510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8800 - 4.4500 0.96 2715 153 0.1572 0.1973 REMARK 3 2 4.4500 - 3.5300 0.98 2781 139 0.1860 0.2202 REMARK 3 3 3.5300 - 3.0900 0.98 2760 148 0.2349 0.3071 REMARK 3 4 3.0900 - 2.8000 0.99 2848 133 0.2999 0.3640 REMARK 3 5 2.8000 - 2.6000 0.99 2804 130 0.2828 0.3534 REMARK 3 6 2.6000 - 2.4500 0.98 2754 145 0.3348 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.349 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.694 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2775 REMARK 3 ANGLE : 0.970 3779 REMARK 3 CHIRALITY : 0.050 440 REMARK 3 PLANARITY : 0.008 490 REMARK 3 DIHEDRAL : 15.188 973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3440 73.7157 25.9952 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.3867 REMARK 3 T33: 0.7128 T12: 0.0484 REMARK 3 T13: 0.1351 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 9.3084 L22: 4.6945 REMARK 3 L33: 3.4684 L12: 0.9851 REMARK 3 L13: 0.2699 L23: -2.1976 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.8128 S13: -0.0416 REMARK 3 S21: -0.1160 S22: 0.1368 S23: -0.1379 REMARK 3 S31: 0.1673 S32: -0.2969 S33: -0.1758 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1692 83.6562 26.3829 REMARK 3 T TENSOR REMARK 3 T11: 0.4060 T22: 0.5111 REMARK 3 T33: 0.7371 T12: 0.0814 REMARK 3 T13: 0.0885 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 8.5519 L22: 3.3113 REMARK 3 L33: 4.0695 L12: -1.1346 REMARK 3 L13: 1.8258 L23: 0.9256 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.4143 S13: 0.9989 REMARK 3 S21: -0.2312 S22: -0.1979 S23: 0.1929 REMARK 3 S31: -0.4024 S32: -0.3804 S33: 0.2253 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2919 71.9222 13.2817 REMARK 3 T TENSOR REMARK 3 T11: 0.9622 T22: 1.3121 REMARK 3 T33: 0.4976 T12: 0.1635 REMARK 3 T13: 0.1856 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 3.8113 L22: 1.6864 REMARK 3 L33: 4.5478 L12: -1.8207 REMARK 3 L13: 4.0289 L23: -2.4131 REMARK 3 S TENSOR REMARK 3 S11: 0.9019 S12: 3.1763 S13: 0.0734 REMARK 3 S21: -1.8488 S22: -0.0441 S23: -0.0227 REMARK 3 S31: -0.0092 S32: -1.1033 S33: -0.3818 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4057 74.0031 14.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.6489 T22: 1.0451 REMARK 3 T33: 0.7550 T12: 0.1538 REMARK 3 T13: 0.1521 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 7.3338 L22: 5.7646 REMARK 3 L33: 2.9677 L12: 0.1001 REMARK 3 L13: 3.2588 L23: -0.7568 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 1.2809 S13: -0.1257 REMARK 3 S21: 0.6116 S22: -0.4076 S23: 1.2779 REMARK 3 S31: 0.1310 S32: 0.2061 S33: 0.3588 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8920 79.6129 20.4658 REMARK 3 T TENSOR REMARK 3 T11: 0.5025 T22: 0.4171 REMARK 3 T33: 0.9961 T12: 0.0484 REMARK 3 T13: 0.1972 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 5.6444 L22: 4.9976 REMARK 3 L33: 2.8695 L12: 0.0995 REMARK 3 L13: -2.9551 L23: -1.3053 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: 0.2648 S13: -0.0135 REMARK 3 S21: -0.2930 S22: -0.0657 S23: -0.5463 REMARK 3 S31: -0.1029 S32: 0.0427 S33: -0.0623 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 66 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5137 96.6877 24.2857 REMARK 3 T TENSOR REMARK 3 T11: 0.6080 T22: 0.4934 REMARK 3 T33: 1.1993 T12: -0.0092 REMARK 3 T13: 0.0946 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 3.2798 L22: 9.3173 REMARK 3 L33: 2.8674 L12: -4.2908 REMARK 3 L13: 0.2077 L23: 1.7780 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.1413 S13: 0.6875 REMARK 3 S21: -0.5184 S22: -0.0410 S23: -1.1600 REMARK 3 S31: -0.6148 S32: 0.0282 S33: 0.0209 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2231 88.9289 11.3535 REMARK 3 T TENSOR REMARK 3 T11: 1.0280 T22: 0.6908 REMARK 3 T33: 0.7341 T12: 0.0834 REMARK 3 T13: 0.1221 T23: 0.1924 REMARK 3 L TENSOR REMARK 3 L11: 5.7229 L22: 3.3481 REMARK 3 L33: 4.5823 L12: 0.6043 REMARK 3 L13: 3.3526 L23: 3.2755 REMARK 3 S TENSOR REMARK 3 S11: 0.7649 S12: 0.2797 S13: 0.8253 REMARK 3 S21: -2.7440 S22: -1.4152 S23: 0.7744 REMARK 3 S31: -2.0831 S32: -0.9325 S33: 0.2470 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 67 or REMARK 3 (resid 68 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 69 REMARK 3 through 103 or (resid 104 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 105 or (resid 106 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 107 through 125 or (resid 126 REMARK 3 through 129 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 130 through 162 or (resid 163 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 164 through 166)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 1 or (resid 2 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 3 through 83 or REMARK 3 (resid 84 through 85 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 86 through 149 or (resid 150 REMARK 3 through 151 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG )) REMARK 3 or resid 152 or (resid 153 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 154 through 166)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 92.72150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.53278 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.64767 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 92.72150 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 53.53278 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.64767 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 92.72150 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 53.53278 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.64767 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 107.06557 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.29533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 107.06557 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.29533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 107.06557 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.29533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 167 REMARK 465 ALA A 168 REMARK 465 ILE A 169 REMARK 465 ASP A 170 REMARK 465 SER A 171 REMARK 465 ASP A 172 REMARK 465 LYS A 173 REMARK 465 VAL A 174 REMARK 465 ALA A 175 REMARK 465 GLU A 176 REMARK 465 LYS A 177 REMARK 465 ILE A 178 REMARK 465 ALA A 179 REMARK 465 ASP A 180 REMARK 465 GLU A 181 REMARK 465 ALA A 182 REMARK 465 ARG A 183 REMARK 465 PRO A 184 REMARK 465 GLY A 185 REMARK 465 ALA A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 MET B 1 REMARK 465 GLY B 15 REMARK 465 THR C 167 REMARK 465 ALA C 168 REMARK 465 ILE C 169 REMARK 465 ASP C 170 REMARK 465 SER C 171 REMARK 465 ASP C 172 REMARK 465 LYS C 173 REMARK 465 VAL C 174 REMARK 465 ALA C 175 REMARK 465 GLU C 176 REMARK 465 LYS C 177 REMARK 465 ILE C 178 REMARK 465 ALA C 179 REMARK 465 ASP C 180 REMARK 465 GLU C 181 REMARK 465 ALA C 182 REMARK 465 ARG C 183 REMARK 465 PRO C 184 REMARK 465 GLY C 185 REMARK 465 ALA C 186 REMARK 465 HIS C 187 REMARK 465 HIS C 188 REMARK 465 HIS C 189 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 HIS C 192 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLN D 13 REMARK 465 LYS D 14 REMARK 465 GLY D 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 LYS A 33 CD CE NZ REMARK 470 LYS A 37 CE NZ REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 ARG A 68 NE CZ NH1 NH2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 SER A 84 OG REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 SER A 127 OG REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 ARG A 150 CD NE CZ NH1 NH2 REMARK 470 GLU A 151 CD OE1 OE2 REMARK 470 ARG A 153 CD NE CZ NH1 NH2 REMARK 470 SER B 2 OG REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS C 33 CD CE NZ REMARK 470 LYS C 37 CE NZ REMARK 470 GLU C 38 CG CD OE1 OE2 REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 ASP C 67 CG OD1 OD2 REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 70 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 83 CG CD OE1 OE2 REMARK 470 ARG C 85 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 99 CG CD OE1 OE2 REMARK 470 GLN C 104 CG CD OE1 NE2 REMARK 470 ASN C 106 CG OD1 ND2 REMARK 470 GLN C 126 CG CD OE1 NE2 REMARK 470 SER C 127 OG REMARK 470 GLU C 128 CG CD OE1 OE2 REMARK 470 GLU C 131 CG CD OE1 OE2 REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 GLN C 149 CG CD OE1 NE2 REMARK 470 ARG C 153 NE CZ NH1 NH2 REMARK 470 LYS C 163 CG CD CE NZ REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 LYS D 12 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 13 125.48 -39.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 8JZD A 1 183 UNP P0AF26 NARJ_ECOLI 1 183 DBREF 8JZD B 1 15 UNP P09152 NARG_ECOLI 1 15 DBREF 8JZD C 1 183 UNP P0AF26 NARJ_ECOLI 1 183 DBREF 8JZD D 1 15 UNP P09152 NARG_ECOLI 1 15 SEQADV 8JZD PRO A 184 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD GLY A 185 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD ALA A 186 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS A 187 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS A 188 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS A 189 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS A 190 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS A 191 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS A 192 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD PRO C 184 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD GLY C 185 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD ALA C 186 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS C 187 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS C 188 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS C 189 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS C 190 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS C 191 UNP P0AF26 EXPRESSION TAG SEQADV 8JZD HIS C 192 UNP P0AF26 EXPRESSION TAG SEQRES 1 A 192 MET ILE GLU LEU VAL ILE VAL SER ARG LEU LEU GLU TYR SEQRES 2 A 192 PRO ASP ALA ALA LEU TRP GLN HIS GLN GLN GLU MET PHE SEQRES 3 A 192 GLU ALA ILE ALA ALA SER LYS ASN LEU PRO LYS GLU ASP SEQRES 4 A 192 ALA HIS ALA LEU GLY ILE PHE LEU ARG ASP LEU THR THR SEQRES 5 A 192 MET ASP PRO LEU ASP ALA GLN ALA GLN TYR SER GLU LEU SEQRES 6 A 192 PHE ASP ARG GLY ARG ALA THR SER LEU LEU LEU PHE GLU SEQRES 7 A 192 HIS VAL HIS GLY GLU SER ARG ASP ARG GLY GLN ALA MET SEQRES 8 A 192 VAL ASP LEU LEU ALA GLN TYR GLU GLN HIS GLY LEU GLN SEQRES 9 A 192 LEU ASN SER ARG GLU LEU PRO ASP HIS LEU PRO LEU TYR SEQRES 10 A 192 LEU GLU TYR LEU ALA GLN LEU PRO GLN SER GLU ALA VAL SEQRES 11 A 192 GLU GLY LEU LYS ASP ILE ALA PRO ILE LEU ALA LEU LEU SEQRES 12 A 192 SER ALA ARG LEU GLN GLN ARG GLU SER ARG TYR ALA VAL SEQRES 13 A 192 LEU PHE ASP LEU LEU LEU LYS LEU ALA ASN THR ALA ILE SEQRES 14 A 192 ASP SER ASP LYS VAL ALA GLU LYS ILE ALA ASP GLU ALA SEQRES 15 A 192 ARG PRO GLY ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 15 MET SER LYS PHE LEU ASP ARG PHE ARG TYR PHE LYS GLN SEQRES 2 B 15 LYS GLY SEQRES 1 C 192 MET ILE GLU LEU VAL ILE VAL SER ARG LEU LEU GLU TYR SEQRES 2 C 192 PRO ASP ALA ALA LEU TRP GLN HIS GLN GLN GLU MET PHE SEQRES 3 C 192 GLU ALA ILE ALA ALA SER LYS ASN LEU PRO LYS GLU ASP SEQRES 4 C 192 ALA HIS ALA LEU GLY ILE PHE LEU ARG ASP LEU THR THR SEQRES 5 C 192 MET ASP PRO LEU ASP ALA GLN ALA GLN TYR SER GLU LEU SEQRES 6 C 192 PHE ASP ARG GLY ARG ALA THR SER LEU LEU LEU PHE GLU SEQRES 7 C 192 HIS VAL HIS GLY GLU SER ARG ASP ARG GLY GLN ALA MET SEQRES 8 C 192 VAL ASP LEU LEU ALA GLN TYR GLU GLN HIS GLY LEU GLN SEQRES 9 C 192 LEU ASN SER ARG GLU LEU PRO ASP HIS LEU PRO LEU TYR SEQRES 10 C 192 LEU GLU TYR LEU ALA GLN LEU PRO GLN SER GLU ALA VAL SEQRES 11 C 192 GLU GLY LEU LYS ASP ILE ALA PRO ILE LEU ALA LEU LEU SEQRES 12 C 192 SER ALA ARG LEU GLN GLN ARG GLU SER ARG TYR ALA VAL SEQRES 13 C 192 LEU PHE ASP LEU LEU LEU LYS LEU ALA ASN THR ALA ILE SEQRES 14 C 192 ASP SER ASP LYS VAL ALA GLU LYS ILE ALA ASP GLU ALA SEQRES 15 C 192 ARG PRO GLY ALA HIS HIS HIS HIS HIS HIS SEQRES 1 D 15 MET SER LYS PHE LEU ASP ARG PHE ARG TYR PHE LYS GLN SEQRES 2 D 15 LYS GLY HELIX 1 AA1 MET A 1 GLU A 12 1 12 HELIX 2 AA2 ASP A 15 HIS A 21 1 7 HELIX 3 AA3 HIS A 21 ALA A 31 1 11 HELIX 4 AA4 PRO A 36 MET A 53 1 18 HELIX 5 AA5 ASP A 54 ASP A 67 1 14 HELIX 6 AA6 LEU A 76 HIS A 81 1 6 HELIX 7 AA7 GLU A 83 HIS A 101 1 19 HELIX 8 AA8 HIS A 113 GLN A 123 1 11 HELIX 9 AA9 PRO A 125 ARG A 150 1 26 HELIX 10 AB1 TYR A 154 ASN A 166 1 13 HELIX 11 AB2 LYS B 3 ARG B 7 5 5 HELIX 12 AB3 ILE C 2 GLU C 12 1 11 HELIX 13 AB4 ASP C 15 HIS C 21 1 7 HELIX 14 AB5 HIS C 21 ALA C 31 1 11 HELIX 15 AB6 PRO C 36 THR C 52 1 17 HELIX 16 AB7 ASP C 54 ASP C 67 1 14 HELIX 17 AB8 LEU C 76 HIS C 81 1 6 HELIX 18 AB9 GLU C 83 HIS C 101 1 19 HELIX 19 AC1 HIS C 113 GLN C 123 1 11 HELIX 20 AC2 PRO C 125 ARG C 150 1 26 HELIX 21 AC3 TYR C 154 ASN C 166 1 13 SHEET 1 AA1 2 LEU A 103 LEU A 105 0 SHEET 2 AA1 2 PHE B 11 GLN B 13 -1 O LYS B 12 N GLN A 104 SHEET 1 AA2 2 GLN C 104 LEU C 105 0 SHEET 2 AA2 2 PHE D 11 LYS D 12 -1 O LYS D 12 N GLN C 104 CRYST1 185.443 185.443 37.943 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005392 0.003113 0.000000 0.00000 SCALE2 0.000000 0.006227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026355 0.00000 MTRIX1 1 0.484384 0.874281 0.031702 -31.86410 1 MTRIX2 1 -0.859791 0.482426 -0.167407 59.83671 1 MTRIX3 1 -0.161654 0.053832 0.985378 -6.88000 1