HEADER TRANSFERASE 07-JUL-23 8K09 TITLE PQ3-O-UGT2 WITH 20(S)-GINSENOSIDE F2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: C, A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PANAX QUINQUEFOLIUS; SOURCE 3 ORGANISM_TAXID: 44588; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCOSYTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.R.MEI,Q.S.JI,Y.R.LIU REVDAT 2 12-FEB-25 8K09 1 JRNL REVDAT 1 29-JAN-25 8K09 0 JRNL AUTH Q.JI,Y.LIU,H.ZHANG,Y.GAO,Y.DING,Y.DING,J.XIE,J.ZHANG,X.JIN, JRNL AUTH 2 B.LAI,C.CHEN,J.WANG,W.GAO,K.MEI JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE RECOGNITION OF JRNL TITL 2 GINSENOSIDE GLYCOSYLTRANSFERASE PQ3-O-UGT2. JRNL REF ADV SCI 13185 2025 JRNL REFN ESSN 2198-3844 JRNL PMID 39887940 JRNL DOI 10.1002/ADVS.202413185 REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19_4092: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.298 REMARK 3 R VALUE (WORKING SET) : 0.296 REMARK 3 FREE R VALUE : 0.332 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2700 - 5.7400 1.00 2609 137 0.2595 0.2680 REMARK 3 2 5.7400 - 4.5600 1.00 2479 129 0.3112 0.3705 REMARK 3 3 4.5600 - 3.9800 1.00 2444 133 0.3156 0.3812 REMARK 3 4 3.9800 - 3.6200 1.00 2467 119 0.3509 0.4140 REMARK 3 5 3.6200 - 3.3600 1.00 2400 133 0.3730 0.4354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6230 REMARK 3 ANGLE : 0.865 8445 REMARK 3 CHIRALITY : 0.063 977 REMARK 3 PLANARITY : 0.005 1056 REMARK 3 DIHEDRAL : 15.724 2271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4437 -11.7642 -1.2336 REMARK 3 T TENSOR REMARK 3 T11: 1.0378 T22: 0.5952 REMARK 3 T33: 1.0243 T12: 0.1725 REMARK 3 T13: 0.2376 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 4.0433 L22: 3.8944 REMARK 3 L33: 8.1627 L12: 0.2305 REMARK 3 L13: 0.1299 L23: 0.1076 REMARK 3 S TENSOR REMARK 3 S11: -0.2041 S12: 0.0038 S13: 0.4265 REMARK 3 S21: 0.2527 S22: -0.0890 S23: 0.1474 REMARK 3 S31: 1.1804 S32: 0.7603 S33: 0.3188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 129 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8733 -1.7881 -18.2482 REMARK 3 T TENSOR REMARK 3 T11: 0.6368 T22: 0.2526 REMARK 3 T33: 0.4482 T12: -0.1188 REMARK 3 T13: -0.0005 T23: -0.1621 REMARK 3 L TENSOR REMARK 3 L11: 8.4972 L22: 8.6591 REMARK 3 L33: 5.4797 L12: -4.5356 REMARK 3 L13: 1.7802 L23: -3.5815 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: 0.1580 S13: 0.2872 REMARK 3 S21: 0.4278 S22: -0.1227 S23: -0.5155 REMARK 3 S31: -0.2425 S32: 0.4066 S33: 0.1723 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 259 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8549 8.1045 -9.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.9863 T22: 1.5733 REMARK 3 T33: 2.1274 T12: 0.2521 REMARK 3 T13: 0.1321 T23: -0.2179 REMARK 3 L TENSOR REMARK 3 L11: 1.8116 L22: 5.5968 REMARK 3 L33: 4.1491 L12: -1.4512 REMARK 3 L13: -0.3858 L23: -1.8023 REMARK 3 S TENSOR REMARK 3 S11: 0.1873 S12: -0.2088 S13: 0.2795 REMARK 3 S21: 1.0099 S22: -0.5257 S23: 1.5504 REMARK 3 S31: 0.3769 S32: -2.0414 S33: 0.9555 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 311 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8535 0.0063 -20.6412 REMARK 3 T TENSOR REMARK 3 T11: 0.6003 T22: 0.7663 REMARK 3 T33: 0.9829 T12: -0.0219 REMARK 3 T13: 0.1160 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 6.4471 L22: 6.6921 REMARK 3 L33: 6.6395 L12: -4.0248 REMARK 3 L13: -3.3309 L23: -2.2278 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: 0.1091 S13: -0.6619 REMARK 3 S21: 0.0633 S22: 0.2199 S23: 1.5807 REMARK 3 S31: 0.8189 S32: -0.6580 S33: -0.0042 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 422 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2872 -20.8750 -17.5186 REMARK 3 T TENSOR REMARK 3 T11: 1.5001 T22: 0.8996 REMARK 3 T33: 1.1914 T12: 0.5159 REMARK 3 T13: -0.1013 T23: -0.4320 REMARK 3 L TENSOR REMARK 3 L11: 4.9454 L22: 3.7547 REMARK 3 L33: 1.9609 L12: -3.5901 REMARK 3 L13: 6.0325 L23: -5.9268 REMARK 3 S TENSOR REMARK 3 S11: -0.7146 S12: -0.0217 S13: 1.8632 REMARK 3 S21: 1.0067 S22: -0.5171 S23: -0.0108 REMARK 3 S31: 0.4122 S32: 2.8956 S33: -0.1726 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0662 -19.6333 -49.0283 REMARK 3 T TENSOR REMARK 3 T11: 0.8605 T22: 0.9256 REMARK 3 T33: 0.4187 T12: 0.2561 REMARK 3 T13: 0.0334 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 5.6408 L22: 6.8730 REMARK 3 L33: 4.0737 L12: -2.1804 REMARK 3 L13: 3.5450 L23: 3.7596 REMARK 3 S TENSOR REMARK 3 S11: -1.1416 S12: -0.7785 S13: -0.3698 REMARK 3 S21: 0.7459 S22: 0.7931 S23: -0.3243 REMARK 3 S31: -0.1911 S32: -0.7922 S33: -0.0033 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2693 -2.2225 -53.9676 REMARK 3 T TENSOR REMARK 3 T11: 1.3081 T22: 0.7107 REMARK 3 T33: 1.1368 T12: 0.3632 REMARK 3 T13: -0.3841 T23: -0.3196 REMARK 3 L TENSOR REMARK 3 L11: 9.2556 L22: 2.9384 REMARK 3 L33: 7.6192 L12: -1.5278 REMARK 3 L13: 1.5708 L23: 1.5989 REMARK 3 S TENSOR REMARK 3 S11: -0.6631 S12: -0.8472 S13: 0.6343 REMARK 3 S21: 0.2336 S22: 0.2644 S23: -0.3250 REMARK 3 S31: 0.0079 S32: 0.9383 S33: 0.3923 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 8K09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13050 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.360 REMARK 200 RESOLUTION RANGE LOW (A) : 49.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH5.13, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.13500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 ASN C 3 REMARK 465 GLN C 4 REMARK 465 LYS C 5 REMARK 465 GLY C 6 REMARK 465 ARG C 7 REMARK 465 SER C 55 REMARK 465 SER C 56 REMARK 465 SER C 69 REMARK 465 PRO C 70 REMARK 465 ASP C 71 REMARK 465 LEU C 72 REMARK 465 PRO C 73 REMARK 465 PRO C 74 REMARK 465 HIS C 75 REMARK 465 TYR C 76 REMARK 465 HIS C 77 REMARK 465 THR C 78 REMARK 465 THR C 79 REMARK 465 ASN C 80 REMARK 465 GLY C 81 REMARK 465 LEU C 82 REMARK 465 PRO C 83 REMARK 465 SER C 84 REMARK 465 HIS C 85 REMARK 465 LEU C 86 REMARK 465 MET C 87 REMARK 465 LEU C 88 REMARK 465 PRO C 89 REMARK 465 LEU C 90 REMARK 465 GLU C 172 REMARK 465 PRO C 173 REMARK 465 PRO C 174 REMARK 465 PRO C 230 REMARK 465 MET C 231 REMARK 465 GLY C 232 REMARK 465 HIS C 233 REMARK 465 ASN C 234 REMARK 465 GLU C 235 REMARK 465 ASP C 236 REMARK 465 PRO C 237 REMARK 465 LYS C 238 REMARK 465 ILE C 291 REMARK 465 GLU C 292 REMARK 465 GLY C 293 REMARK 465 GLU C 294 REMARK 465 LYS C 295 REMARK 465 LYS C 296 REMARK 465 GLY C 297 REMARK 465 ILE C 298 REMARK 465 LEU C 299 REMARK 465 GLU C 443 REMARK 465 ASN C 444 REMARK 465 LEU C 445 REMARK 465 TYR C 446 REMARK 465 PHE C 447 REMARK 465 GLN C 448 REMARK 465 GLY C 449 REMARK 465 HIS C 450 REMARK 465 HIS C 451 REMARK 465 HIS C 452 REMARK 465 HIS C 453 REMARK 465 HIS C 454 REMARK 465 HIS C 455 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 70 REMARK 465 ASP A 71 REMARK 465 LEU A 72 REMARK 465 PRO A 73 REMARK 465 PRO A 74 REMARK 465 HIS A 75 REMARK 465 TYR A 76 REMARK 465 HIS A 77 REMARK 465 THR A 78 REMARK 465 THR A 79 REMARK 465 ASN A 80 REMARK 465 GLY A 81 REMARK 465 LEU A 82 REMARK 465 PRO A 83 REMARK 465 SER A 84 REMARK 465 HIS A 85 REMARK 465 LEU A 86 REMARK 465 MET A 87 REMARK 465 LEU A 88 REMARK 465 PRO A 89 REMARK 465 LEU A 90 REMARK 465 ARG A 91 REMARK 465 ASN A 92 REMARK 465 ALA A 93 REMARK 465 PRO A 171 REMARK 465 GLU A 172 REMARK 465 PRO A 173 REMARK 465 PRO A 174 REMARK 465 SER A 175 REMARK 465 GLN A 228 REMARK 465 ASP A 229 REMARK 465 PRO A 230 REMARK 465 MET A 231 REMARK 465 GLY A 232 REMARK 465 HIS A 233 REMARK 465 ASN A 234 REMARK 465 GLU A 235 REMARK 465 ARG A 289 REMARK 465 LEU A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 LYS A 295 REMARK 465 LYS A 296 REMARK 465 GLY A 297 REMARK 465 ILE A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 GLU A 301 REMARK 465 GLY A 302 REMARK 465 PHE A 303 REMARK 465 VAL A 304 REMARK 465 LYS A 383 REMARK 465 TYR A 384 REMARK 465 LYS A 385 REMARK 465 ASP A 440 REMARK 465 GLU A 441 REMARK 465 GLN A 442 REMARK 465 GLU A 443 REMARK 465 ASN A 444 REMARK 465 LEU A 445 REMARK 465 TYR A 446 REMARK 465 PHE A 447 REMARK 465 GLN A 448 REMARK 465 GLY A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 192 O ILE C 195 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG PRO C 154 CD PRO A 67 3654 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS C 36 51.98 39.68 REMARK 500 LYS C 51 51.57 -109.90 REMARK 500 LYS C 53 -130.15 -132.52 REMARK 500 ASN C 92 -144.21 -155.18 REMARK 500 ALA C 97 33.38 -76.30 REMARK 500 ASP C 116 -135.66 -87.25 REMARK 500 SER C 120 -51.86 65.58 REMARK 500 PRO C 154 0.42 -69.89 REMARK 500 GLU C 156 -129.61 55.59 REMARK 500 LYS C 157 160.87 67.01 REMARK 500 PHE C 163 -81.72 -88.48 REMARK 500 ASN C 166 -154.28 -99.85 REMARK 500 ASP C 194 -52.56 64.82 REMARK 500 GLU C 205 52.75 -156.46 REMARK 500 CYS C 258 49.74 -154.28 REMARK 500 TYR C 263 -99.79 -128.68 REMARK 500 LEU C 265 100.90 -166.02 REMARK 500 VAL C 307 44.43 -99.54 REMARK 500 ASP C 309 -32.13 65.98 REMARK 500 ARG C 356 -74.44 -153.97 REMARK 500 LEU C 358 -145.35 64.09 REMARK 500 ASP C 379 -168.88 -73.65 REMARK 500 GLU C 421 -47.59 66.13 REMARK 500 LEU A 16 46.28 -76.83 REMARK 500 LYS A 53 -113.00 -120.58 REMARK 500 GLU A 95 4.91 -68.12 REMARK 500 ALA A 97 31.39 -84.98 REMARK 500 ASP A 116 -141.02 -90.89 REMARK 500 SER A 120 -57.04 63.71 REMARK 500 PHE A 151 -71.26 -85.00 REMARK 500 ASN A 153 78.10 -113.78 REMARK 500 ASN A 166 -132.40 56.66 REMARK 500 SER A 167 74.44 40.34 REMARK 500 ASN A 168 -136.02 -144.01 REMARK 500 ASP A 194 -23.18 66.05 REMARK 500 GLU A 205 51.59 -141.91 REMARK 500 SER A 261 26.17 49.27 REMARK 500 GLU A 262 -101.68 -131.85 REMARK 500 LEU A 265 102.66 68.37 REMARK 500 ARG A 356 -81.69 -147.91 REMARK 500 LEU A 358 -149.37 61.02 REMARK 500 GLU A 380 -42.34 -143.21 REMARK 500 ASN A 381 -163.60 -160.38 REMARK 500 GLU A 421 -57.39 63.59 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8K09 C 1 442 UNP A0A0M4ME80_PANQU DBREF2 8K09 C A0A0M4ME80 1 442 DBREF1 8K09 A 1 442 UNP A0A0M4ME80_PANQU DBREF2 8K09 A A0A0M4ME80 1 442 SEQADV 8K09 GLU C 443 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 ASN C 444 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 LEU C 445 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 TYR C 446 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 PHE C 447 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 GLN C 448 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 GLY C 449 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS C 450 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS C 451 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS C 452 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS C 453 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS C 454 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS C 455 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 GLU A 443 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 ASN A 444 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 LEU A 445 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 TYR A 446 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 PHE A 447 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 GLN A 448 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 GLY A 449 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS A 450 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS A 451 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS A 452 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS A 453 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS A 454 UNP A0A0M4ME8 EXPRESSION TAG SEQADV 8K09 HIS A 455 UNP A0A0M4ME8 EXPRESSION TAG SEQRES 1 C 455 MET ASP ASN GLN LYS GLY ARG ILE SER ILE ALA LEU LEU SEQRES 2 C 455 PRO PHE LEU ALA HIS GLY HIS ILE SER PRO PHE PHE GLU SEQRES 3 C 455 LEU ALA LYS GLN LEU ALA LYS ARG ASN CYS ASN VAL PHE SEQRES 4 C 455 LEU CYS SER THR PRO ILE ASN LEU SER SER ILE LYS ASP SEQRES 5 C 455 LYS ASP SER SER ALA SER ILE LYS LEU VAL GLU LEU HIS SEQRES 6 C 455 LEU PRO SER SER PRO ASP LEU PRO PRO HIS TYR HIS THR SEQRES 7 C 455 THR ASN GLY LEU PRO SER HIS LEU MET LEU PRO LEU ARG SEQRES 8 C 455 ASN ALA PHE GLU THR ALA GLY PRO THR PHE SER GLU ILE SEQRES 9 C 455 LEU LYS THR LEU ASN PRO ASP LEU LEU ILE TYR ASP PHE SEQRES 10 C 455 ASN PRO SER TRP ALA PRO GLU ILE ALA SER SER HIS ASN SEQRES 11 C 455 ILE PRO ALA VAL TYR PHE LEU THR THR ALA ALA ALA SER SEQRES 12 C 455 SER SER ILE GLY LEU HIS ALA PHE LYS ASN PRO GLY GLU SEQRES 13 C 455 LYS TYR PRO PHE PRO ASP PHE TYR ASP ASN SER ASN ILE SEQRES 14 C 455 ILE PRO GLU PRO PRO SER ALA ASP ASN MET LYS LEU LEU SEQRES 15 C 455 HIS ASP PHE ILE ALA CYS PHE GLU ARG SER CYS ASP ILE SEQRES 16 C 455 ILE LEU ILE LYS SER PHE ARG GLU LEU GLU GLY LYS TYR SEQRES 17 C 455 ILE ASP LEU LEU SER THR LEU SER ASP LYS THR LEU VAL SEQRES 18 C 455 PRO VAL GLY PRO LEU VAL GLN ASP PRO MET GLY HIS ASN SEQRES 19 C 455 GLU ASP PRO LYS THR GLU GLN ILE ILE ASN TRP LEU ASP SEQRES 20 C 455 LYS ARG ALA GLU SER THR VAL VAL PHE VAL CYS PHE GLY SEQRES 21 C 455 SER GLU TYR PHE LEU SER ASN GLU GLU LEU GLU GLU VAL SEQRES 22 C 455 ALA ILE GLY LEU GLU ILE SER THR VAL ASN PHE ILE TRP SEQRES 23 C 455 ALA VAL ARG LEU ILE GLU GLY GLU LYS LYS GLY ILE LEU SEQRES 24 C 455 PRO GLU GLY PHE VAL GLN ARG VAL GLY ASP ARG GLY LEU SEQRES 25 C 455 VAL VAL GLU GLY TRP ALA PRO GLN ALA ARG ILE LEU GLY SEQRES 26 C 455 HIS SER SER THR GLY GLY PHE VAL SER HIS CYS GLY TRP SEQRES 27 C 455 SER SER ILE ALA GLU SER MET LYS PHE GLY VAL PRO VAL SEQRES 28 C 455 ILE ALA MET ALA ARG HIS LEU ASP GLN PRO LEU ASN GLY SEQRES 29 C 455 LYS LEU ALA ALA GLU VAL GLY VAL GLY MET GLU VAL VAL SEQRES 30 C 455 ARG ASP GLU ASN GLY LYS TYR LYS ARG GLU GLY ILE ALA SEQRES 31 C 455 GLU VAL ILE ARG LYS VAL VAL VAL GLU LYS SER GLY GLU SEQRES 32 C 455 VAL ILE ARG ARG LYS ALA ARG GLU LEU SER GLU LYS MET SEQRES 33 C 455 LYS GLU LYS GLY GLU GLN GLU ILE ASP ARG ALA VAL GLU SEQRES 34 C 455 GLU LEU VAL GLN ILE CYS LYS LYS LYS LYS ASP GLU GLN SEQRES 35 C 455 GLU ASN LEU TYR PHE GLN GLY HIS HIS HIS HIS HIS HIS SEQRES 1 A 455 MET ASP ASN GLN LYS GLY ARG ILE SER ILE ALA LEU LEU SEQRES 2 A 455 PRO PHE LEU ALA HIS GLY HIS ILE SER PRO PHE PHE GLU SEQRES 3 A 455 LEU ALA LYS GLN LEU ALA LYS ARG ASN CYS ASN VAL PHE SEQRES 4 A 455 LEU CYS SER THR PRO ILE ASN LEU SER SER ILE LYS ASP SEQRES 5 A 455 LYS ASP SER SER ALA SER ILE LYS LEU VAL GLU LEU HIS SEQRES 6 A 455 LEU PRO SER SER PRO ASP LEU PRO PRO HIS TYR HIS THR SEQRES 7 A 455 THR ASN GLY LEU PRO SER HIS LEU MET LEU PRO LEU ARG SEQRES 8 A 455 ASN ALA PHE GLU THR ALA GLY PRO THR PHE SER GLU ILE SEQRES 9 A 455 LEU LYS THR LEU ASN PRO ASP LEU LEU ILE TYR ASP PHE SEQRES 10 A 455 ASN PRO SER TRP ALA PRO GLU ILE ALA SER SER HIS ASN SEQRES 11 A 455 ILE PRO ALA VAL TYR PHE LEU THR THR ALA ALA ALA SER SEQRES 12 A 455 SER SER ILE GLY LEU HIS ALA PHE LYS ASN PRO GLY GLU SEQRES 13 A 455 LYS TYR PRO PHE PRO ASP PHE TYR ASP ASN SER ASN ILE SEQRES 14 A 455 ILE PRO GLU PRO PRO SER ALA ASP ASN MET LYS LEU LEU SEQRES 15 A 455 HIS ASP PHE ILE ALA CYS PHE GLU ARG SER CYS ASP ILE SEQRES 16 A 455 ILE LEU ILE LYS SER PHE ARG GLU LEU GLU GLY LYS TYR SEQRES 17 A 455 ILE ASP LEU LEU SER THR LEU SER ASP LYS THR LEU VAL SEQRES 18 A 455 PRO VAL GLY PRO LEU VAL GLN ASP PRO MET GLY HIS ASN SEQRES 19 A 455 GLU ASP PRO LYS THR GLU GLN ILE ILE ASN TRP LEU ASP SEQRES 20 A 455 LYS ARG ALA GLU SER THR VAL VAL PHE VAL CYS PHE GLY SEQRES 21 A 455 SER GLU TYR PHE LEU SER ASN GLU GLU LEU GLU GLU VAL SEQRES 22 A 455 ALA ILE GLY LEU GLU ILE SER THR VAL ASN PHE ILE TRP SEQRES 23 A 455 ALA VAL ARG LEU ILE GLU GLY GLU LYS LYS GLY ILE LEU SEQRES 24 A 455 PRO GLU GLY PHE VAL GLN ARG VAL GLY ASP ARG GLY LEU SEQRES 25 A 455 VAL VAL GLU GLY TRP ALA PRO GLN ALA ARG ILE LEU GLY SEQRES 26 A 455 HIS SER SER THR GLY GLY PHE VAL SER HIS CYS GLY TRP SEQRES 27 A 455 SER SER ILE ALA GLU SER MET LYS PHE GLY VAL PRO VAL SEQRES 28 A 455 ILE ALA MET ALA ARG HIS LEU ASP GLN PRO LEU ASN GLY SEQRES 29 A 455 LYS LEU ALA ALA GLU VAL GLY VAL GLY MET GLU VAL VAL SEQRES 30 A 455 ARG ASP GLU ASN GLY LYS TYR LYS ARG GLU GLY ILE ALA SEQRES 31 A 455 GLU VAL ILE ARG LYS VAL VAL VAL GLU LYS SER GLY GLU SEQRES 32 A 455 VAL ILE ARG ARG LYS ALA ARG GLU LEU SER GLU LYS MET SEQRES 33 A 455 LYS GLU LYS GLY GLU GLN GLU ILE ASP ARG ALA VAL GLU SEQRES 34 A 455 GLU LEU VAL GLN ILE CYS LYS LYS LYS LYS ASP GLU GLN SEQRES 35 A 455 GLU ASN LEU TYR PHE GLN GLY HIS HIS HIS HIS HIS HIS HET VEI C 501 55 HET VEI A 501 55 HETNAM VEI (2~{R},3~{S},4~{S},5~{R},6~{R})-2-(HYDROXYMETHYL)-6- HETNAM 2 VEI [[(3~{S},5~{R},8~{R},9~{R},10~{R},12~{R},13~{R}, HETNAM 3 VEI 14~{R},17~{S})-17-[(2~{S})-2-[(2~{S},3~{R},4~{S}, HETNAM 4 VEI 5~{S},6~{R})-6-(HYDROXYMETHYL)-3,4,5-TRIS(OXIDANYL) HETNAM 5 VEI OXAN-2-YL]OXY-6-METHYL-HEPT-5-EN-2-YL]-4,4,8,10,14- HETNAM 6 VEI PENTAMETHYL-12-OXIDANYL-2,3,5,6,7,9,11,12,13,15,16,17- HETNAM 7 VEI DODECAHYDRO-1~{H}-CYCLOPENTA[A]PHENANTHREN-3- HETNAM 8 VEI YL]OXY]OXANE-3,4,5-TRIOL HETSYN VEI GINSENOSIDE F2 FORMUL 3 VEI 2(C42 H72 O13) HELIX 1 AA1 ALA C 17 LYS C 33 1 17 HELIX 2 AA2 PRO C 44 SER C 49 1 6 HELIX 3 AA3 ASN C 92 THR C 96 5 5 HELIX 4 AA4 ALA C 97 ASN C 109 1 13 HELIX 5 AA5 TRP C 121 HIS C 129 1 9 HELIX 6 AA6 ALA C 140 ASN C 153 1 14 HELIX 7 AA7 ALA C 176 SER C 192 1 17 HELIX 8 AA8 PHE C 201 ASP C 217 1 17 HELIX 9 AA9 GLU C 240 LYS C 248 1 9 HELIX 10 AB1 SER C 266 ILE C 279 1 14 HELIX 11 AB2 PRO C 319 HIS C 326 1 8 HELIX 12 AB3 GLY C 337 PHE C 347 1 11 HELIX 13 AB4 ASP C 359 GLY C 371 1 13 HELIX 14 AB5 LYS C 385 VAL C 398 1 14 HELIX 15 AB6 GLY C 402 LYS C 419 1 18 HELIX 16 AB7 GLU C 421 GLN C 442 1 22 HELIX 17 AB8 ALA A 17 LYS A 33 1 17 HELIX 18 AB9 PRO A 44 ILE A 50 1 7 HELIX 19 AC1 ALA A 97 ASN A 109 1 13 HELIX 20 AC2 TRP A 121 HIS A 129 1 9 HELIX 21 AC3 ALA A 140 ASN A 153 1 14 HELIX 22 AC4 ASP A 177 SER A 192 1 16 HELIX 23 AC5 PHE A 201 ASP A 217 1 17 HELIX 24 AC6 PRO A 237 LYS A 248 1 12 HELIX 25 AC7 SER A 266 SER A 280 1 15 HELIX 26 AC8 PRO A 319 HIS A 326 1 8 HELIX 27 AC9 GLY A 337 PHE A 347 1 11 HELIX 28 AD1 ASP A 359 GLY A 371 1 13 HELIX 29 AD2 GLU A 387 VAL A 398 1 12 HELIX 30 AD3 GLY A 402 GLY A 420 1 19 HELIX 31 AD4 GLU A 421 LYS A 439 1 19 SHEET 1 AA1 7 ILE C 59 LEU C 61 0 SHEET 2 AA1 7 PHE C 39 SER C 42 1 N CYS C 41 O LEU C 61 SHEET 3 AA1 7 ILE C 10 LEU C 13 1 N LEU C 12 O SER C 42 SHEET 4 AA1 7 LEU C 112 TYR C 115 1 O ILE C 114 N ALA C 11 SHEET 5 AA1 7 ALA C 133 LEU C 137 1 O VAL C 134 N LEU C 113 SHEET 6 AA1 7 ILE C 195 ILE C 198 1 O LEU C 197 N LEU C 137 SHEET 7 AA1 7 THR C 219 PRO C 222 1 O THR C 219 N ILE C 196 SHEET 1 AA2 6 GLY C 311 VAL C 314 0 SHEET 2 AA2 6 ASN C 283 ALA C 287 1 N TRP C 286 O LEU C 312 SHEET 3 AA2 6 VAL C 254 CYS C 258 1 N VAL C 257 O ALA C 287 SHEET 4 AA2 6 THR C 329 SER C 334 1 O VAL C 333 N PHE C 256 SHEET 5 AA2 6 VAL C 351 ALA C 353 1 O ILE C 352 N PHE C 332 SHEET 6 AA2 6 GLY C 373 GLU C 375 1 O MET C 374 N ALA C 353 SHEET 1 AA3 7 ILE A 59 LEU A 61 0 SHEET 2 AA3 7 PHE A 39 SER A 42 1 N CYS A 41 O LEU A 61 SHEET 3 AA3 7 ILE A 10 LEU A 13 1 N LEU A 12 O SER A 42 SHEET 4 AA3 7 LEU A 113 TYR A 115 1 O ILE A 114 N ALA A 11 SHEET 5 AA3 7 ALA A 133 LEU A 137 1 O VAL A 134 N LEU A 113 SHEET 6 AA3 7 ILE A 195 ILE A 198 1 O LEU A 197 N LEU A 137 SHEET 7 AA3 7 THR A 219 PRO A 222 1 O THR A 219 N ILE A 196 SHEET 1 AA4 6 LEU A 312 VAL A 314 0 SHEET 2 AA4 6 ASN A 283 ALA A 287 1 N TRP A 286 O VAL A 314 SHEET 3 AA4 6 VAL A 254 CYS A 258 1 N VAL A 255 O ASN A 283 SHEET 4 AA4 6 THR A 329 SER A 334 1 O GLY A 331 N PHE A 256 SHEET 5 AA4 6 VAL A 351 ALA A 353 1 O ILE A 352 N SER A 334 SHEET 6 AA4 6 GLY A 373 GLU A 375 1 O MET A 374 N VAL A 351 CRYST1 60.270 88.180 164.510 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006079 0.00000