data_8K0W # _entry.id 8K0W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8K0W pdb_00008k0w 10.2210/pdb8k0w/pdb WWPDB D_1300039144 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-16 ? 2 'Structure model' 1 1 2025-06-11 ? 3 'Structure model' 1 2 2025-06-18 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8K0W _pdbx_database_status.recvd_initial_deposition_date 2023-07-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, Y.' 1 ? 'Lin, X.' 2 ? 'Huang, L.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first e202504107 _citation.page_last e202504107 _citation.title 'From Theophylline to Adenine or preQ 1 : Repurposing a DNA Aptamer Revealed by Crystal Structure Analysis.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202504107 _citation.pdbx_database_id_PubMed 40101171 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, X.' 1 ? primary 'Huang, Y.' 2 ? primary 'Huang, J.' 3 ? primary 'Yuan, H.' 4 ? primary 'Luo, Y.' 5 ? primary 'Lu, Z.' 6 ? primary 'Ao, Y.' 7 ? primary 'Huang, J.' 8 ? primary 'Chen, S.B.' 9 ? primary 'Miao, Z.' 10 ? primary 'Huang, L.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (29-MER)' 8918.707 1 ? ? ? ? 2 non-polymer syn THEOPHYLLINE 180.164 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 5 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 83 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DC)(DG)(DG)(DT)(DG)(DG)(DT)(DC)(DT)(DA)(DT)(DT)(DC)(DA)(DT)(DA)(DG)(DG)(DC) (DG)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC) ; _entity_poly.pdbx_seq_one_letter_code_can GCGGTGGTCTATTCATAGGCGTCCGCCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 THEOPHYLLINE TEP 3 'SODIUM ION' NA 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DA n 1 12 DT n 1 13 DT n 1 14 DC n 1 15 DA n 1 16 DT n 1 17 DA n 1 18 DG n 1 19 DG n 1 20 DC n 1 21 DG n 1 22 DT n 1 23 DC n 1 24 DC n 1 25 DG n 1 26 DC n 1 27 DC n 1 28 DG n 1 29 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 29 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 TEP non-polymer . THEOPHYLLINE ? 'C7 H8 N4 O2' 180.164 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DA 15 15 15 DA DA A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DA 17 17 17 DA DA A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DC 20 20 20 DC DC A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DC 23 23 23 DC DC A . n A 1 24 DC 24 24 24 DC DC A . n A 1 25 DG 25 25 25 DG DG A . n A 1 26 DC 26 26 26 DC DC A . n A 1 27 DC 27 27 27 DC DC A . n A 1 28 DG 28 28 28 DG DG A . n A 1 29 DC 29 29 29 DC DC A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id TEP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id TEP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TEP 1 101 101 TEP TEP A . C 3 NA 1 102 1 NA NA A . D 3 NA 1 103 2 NA NA A . E 3 NA 1 104 3 NA NA A . F 3 NA 1 105 4 NA NA A . G 3 NA 1 106 5 NA NA A . H 4 MG 1 107 1 MG MG A . I 5 HOH 1 201 43 HOH HOH A . I 5 HOH 2 202 63 HOH HOH A . I 5 HOH 3 203 80 HOH HOH A . I 5 HOH 4 204 76 HOH HOH A . I 5 HOH 5 205 81 HOH HOH A . I 5 HOH 6 206 58 HOH HOH A . I 5 HOH 7 207 24 HOH HOH A . I 5 HOH 8 208 75 HOH HOH A . I 5 HOH 9 209 64 HOH HOH A . I 5 HOH 10 210 47 HOH HOH A . I 5 HOH 11 211 57 HOH HOH A . I 5 HOH 12 212 39 HOH HOH A . I 5 HOH 13 213 8 HOH HOH A . I 5 HOH 14 214 9 HOH HOH A . I 5 HOH 15 215 28 HOH HOH A . I 5 HOH 16 216 17 HOH HOH A . I 5 HOH 17 217 77 HOH HOH A . I 5 HOH 18 218 42 HOH HOH A . I 5 HOH 19 219 19 HOH HOH A . I 5 HOH 20 220 82 HOH HOH A . I 5 HOH 21 221 74 HOH HOH A . I 5 HOH 22 222 20 HOH HOH A . I 5 HOH 23 223 49 HOH HOH A . I 5 HOH 24 224 31 HOH HOH A . I 5 HOH 25 225 73 HOH HOH A . I 5 HOH 26 226 32 HOH HOH A . I 5 HOH 27 227 18 HOH HOH A . I 5 HOH 28 228 37 HOH HOH A . I 5 HOH 29 229 61 HOH HOH A . I 5 HOH 30 230 26 HOH HOH A . I 5 HOH 31 231 30 HOH HOH A . I 5 HOH 32 232 14 HOH HOH A . I 5 HOH 33 233 13 HOH HOH A . I 5 HOH 34 234 3 HOH HOH A . I 5 HOH 35 235 41 HOH HOH A . I 5 HOH 36 236 16 HOH HOH A . I 5 HOH 37 237 7 HOH HOH A . I 5 HOH 38 238 6 HOH HOH A . I 5 HOH 39 239 15 HOH HOH A . I 5 HOH 40 240 1 HOH HOH A . I 5 HOH 41 241 5 HOH HOH A . I 5 HOH 42 242 48 HOH HOH A . I 5 HOH 43 243 53 HOH HOH A . I 5 HOH 44 244 2 HOH HOH A . I 5 HOH 45 245 23 HOH HOH A . I 5 HOH 46 246 45 HOH HOH A . I 5 HOH 47 247 27 HOH HOH A . I 5 HOH 48 248 10 HOH HOH A . I 5 HOH 49 249 33 HOH HOH A . I 5 HOH 50 250 66 HOH HOH A . I 5 HOH 51 251 40 HOH HOH A . I 5 HOH 52 252 56 HOH HOH A . I 5 HOH 53 253 38 HOH HOH A . I 5 HOH 54 254 34 HOH HOH A . I 5 HOH 55 255 50 HOH HOH A . I 5 HOH 56 256 22 HOH HOH A . I 5 HOH 57 257 44 HOH HOH A . I 5 HOH 58 258 78 HOH HOH A . I 5 HOH 59 259 62 HOH HOH A . I 5 HOH 60 260 60 HOH HOH A . I 5 HOH 61 261 59 HOH HOH A . I 5 HOH 62 262 21 HOH HOH A . I 5 HOH 63 263 51 HOH HOH A . I 5 HOH 64 264 79 HOH HOH A . I 5 HOH 65 265 71 HOH HOH A . I 5 HOH 66 266 4 HOH HOH A . I 5 HOH 67 267 67 HOH HOH A . I 5 HOH 68 268 69 HOH HOH A . I 5 HOH 69 269 52 HOH HOH A . I 5 HOH 70 270 68 HOH HOH A . I 5 HOH 71 271 29 HOH HOH A . I 5 HOH 72 272 25 HOH HOH A . I 5 HOH 73 273 55 HOH HOH A . I 5 HOH 74 274 12 HOH HOH A . I 5 HOH 75 275 36 HOH HOH A . I 5 HOH 76 276 83 HOH HOH A . I 5 HOH 77 277 72 HOH HOH A . I 5 HOH 78 278 11 HOH HOH A . I 5 HOH 79 279 46 HOH HOH A . I 5 HOH 80 280 35 HOH HOH A . I 5 HOH 81 281 65 HOH HOH A . I 5 HOH 82 282 70 HOH HOH A . I 5 HOH 83 283 54 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8K0W _cell.details ? _cell.formula_units_Z ? _cell.length_a 50.117 _cell.length_a_esd ? _cell.length_b 50.117 _cell.length_b_esd ? _cell.length_c 50.810 _cell.length_c_esd ? _cell.volume 110522.311 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8K0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ;P 32 2" ; _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8K0W _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Calcium chloride dihydrate 24% v/v Polyethylene glycol 400 40mM Barium Chloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-03-25 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97853 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97853 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 18.70 _reflns.entry_id 8K0W _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.42 _reflns.d_resolution_low 43.40 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14214 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 37.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.42 _reflns_shell.d_res_low 1.50 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2034 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.933 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 27.67 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8K0W _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.42 _refine.ls_d_res_low 25.06 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14132 _refine.ls_number_reflns_R_free 712 _refine.ls_number_reflns_R_work 13420 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 5.04 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2088 _refine.ls_R_factor_R_free 0.2224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2081 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.0315 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1471 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.42 _refine_hist.d_res_low 25.06 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 693 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 591 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0145 ? 675 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.7211 ? 1040 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0783 ? 115 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0182 ? 30 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 32.4649 ? 286 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.42 1.53 . . 139 2620 99.57 . . . . 0.2700 . . . . . . . . . . . 0.2925 'X-RAY DIFFRACTION' 1.53 1.69 . . 136 2660 99.33 . . . . 0.2298 . . . . . . . . . . . 0.2583 'X-RAY DIFFRACTION' 1.69 1.93 . . 139 2666 99.43 . . . . 0.2523 . . . . . . . . . . . 0.2593 'X-RAY DIFFRACTION' 1.93 2.44 . . 147 2678 99.93 . . . . 0.2574 . . . . . . . . . . . 0.2776 'X-RAY DIFFRACTION' 2.44 25.06 . . 151 2796 99.59 . . . . 0.1741 . . . . . . . . . . . 0.1854 # _struct.entry_id 8K0W _struct.title 'Crystal structure of theophylline DNA aptamer bound to theophylline, soaked in Selenourea' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8K0W _struct_keywords.text 'Aptamer, Theophylline, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8K0W _struct_ref.pdbx_db_accession 8K0W _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8K0W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 29 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8K0W _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 29 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 120 ? 1 MORE -9 ? 1 'SSA (A^2)' 4980 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 D NA . NA ? ? A DG 4 A NA 103 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc2 metalc ? ? A DA 15 OP1 ? ? ? 1_555 F NA . NA ? ? A DA 15 A NA 105 1_555 ? ? ? ? ? ? ? 2.718 ? ? metalc3 metalc ? ? A DA 17 OP1 ? ? ? 1_555 C NA . NA ? ? A DA 17 A NA 102 3_655 ? ? ? ? ? ? ? 2.314 ? ? metalc4 metalc ? ? A DG 21 OP1 ? ? ? 1_555 C NA . NA ? ? A DG 21 A NA 102 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc5 metalc ? ? A DT 22 OP2 ? ? ? 1_555 C NA . NA ? ? A DT 22 A NA 102 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 102 A HOH 238 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc7 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 102 A HOH 244 2_544 ? ? ? ? ? ? ? 2.299 ? ? metalc8 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 102 A HOH 253 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc9 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 225 6_554 ? ? ? ? ? ? ? 2.469 ? ? metalc10 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 242 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc11 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 243 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc12 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 262 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc13 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 269 6_554 ? ? ? ? ? ? ? 2.113 ? ? metalc14 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 273 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc15 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 213 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc16 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 216 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc17 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 246 4_545 ? ? ? ? ? ? ? 2.265 ? ? metalc18 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 248 4_545 ? ? ? ? ? ? ? 2.575 ? ? metalc19 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 252 4_545 ? ? ? ? ? ? ? 2.294 ? ? metalc20 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 255 4_545 ? ? ? ? ? ? ? 2.511 ? ? metalc21 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 201 2_545 ? ? ? ? ? ? ? 2.858 ? ? metalc22 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 211 6_555 ? ? ? ? ? ? ? 2.031 ? ? metalc23 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 222 6_555 ? ? ? ? ? ? ? 2.312 ? ? metalc24 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 226 6_555 ? ? ? ? ? ? ? 2.483 ? ? metalc25 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 249 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc26 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 251 6_555 ? ? ? ? ? ? ? 2.378 ? ? metalc27 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 106 A HOH 282 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc28 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 107 A HOH 212 1_555 ? ? ? ? ? ? ? 2.018 ? ? metalc29 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 107 A HOH 214 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc30 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 107 A HOH 232 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc31 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 107 A HOH 274 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc32 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 107 A HOH 275 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc33 metalc ? ? H MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 107 A HOH 278 1_555 ? ? ? ? ? ? ? 2.192 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 29 N3 ? ? A DG 1 A DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 29 O2 ? ? A DG 1 A DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 29 N4 ? ? A DG 1 A DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 28 N1 ? ? A DC 2 A DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 28 O6 ? ? A DC 2 A DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 28 N2 ? ? A DC 2 A DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 27 N3 ? ? A DG 3 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 27 O2 ? ? A DG 3 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 27 N4 ? ? A DG 3 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 26 N3 ? ? A DG 4 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 26 O2 ? ? A DG 4 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 26 N4 ? ? A DG 4 A DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DG 25 O6 ? ? A DT 5 A DG 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A DT 5 O2 ? ? ? 1_555 A DG 25 N1 ? ? A DT 5 A DG 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 19 N1 ? ? A DG 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 19 N2 ? ? A DG 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog17 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 24 N3 ? ? A DG 6 A DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 24 O2 ? ? A DG 6 A DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 24 N4 ? ? A DG 6 A DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N7 ? ? ? 1_555 A DG 18 N1 ? ? A DG 7 A DG 18 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 18 N2 ? ? A DG 7 A DG 18 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 23 N3 ? ? A DG 7 A DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 23 O2 ? ? A DG 7 A DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 23 N4 ? ? A DG 7 A DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 9 N3 ? ? ? 1_555 A DG 21 N1 ? ? A DC 9 A DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 9 N4 ? ? ? 1_555 A DG 21 O6 ? ? A DC 9 A DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 9 O2 ? ? ? 1_555 A DG 21 N2 ? ? A DC 9 A DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 11 N1 ? ? ? 1_555 A DT 16 N3 ? ? A DA 11 A DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 11 N6 ? ? ? 1_555 A DT 16 O4 ? ? A DA 11 A DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 15 N7 ? ? A DT 12 A DA 15 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog31 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 15 N6 ? ? A DT 12 A DA 15 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 225 ? 6_554 144.1 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 77.7 ? 3 O ? I HOH . ? A HOH 225 ? 6_554 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 74.3 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 243 ? 1_555 75.4 ? 5 O ? I HOH . ? A HOH 225 ? 6_554 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 243 ? 1_555 140.2 ? 6 O ? I HOH . ? A HOH 242 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 243 ? 1_555 127.5 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 262 ? 1_555 88.3 ? 8 O ? I HOH . ? A HOH 225 ? 6_554 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 262 ? 1_555 87.3 ? 9 O ? I HOH . ? A HOH 242 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 262 ? 1_555 121.2 ? 10 O ? I HOH . ? A HOH 243 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 262 ? 1_555 102.1 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 269 ? 6_554 139.1 ? 12 O ? I HOH . ? A HOH 225 ? 6_554 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 269 ? 6_554 76.8 ? 13 O ? I HOH . ? A HOH 242 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 269 ? 6_554 131.7 ? 14 O ? I HOH . ? A HOH 243 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 269 ? 6_554 64.0 ? 15 O ? I HOH . ? A HOH 262 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 269 ? 6_554 94.9 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 273 ? 1_555 112.1 ? 17 O ? I HOH . ? A HOH 225 ? 6_554 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 273 ? 1_555 74.8 ? 18 O ? I HOH . ? A HOH 242 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 273 ? 1_555 64.1 ? 19 O ? I HOH . ? A HOH 243 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 273 ? 1_555 86.0 ? 20 O ? I HOH . ? A HOH 262 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 273 ? 1_555 159.4 ? 21 O ? I HOH . ? A HOH 269 ? 6_554 NA ? D NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 273 ? 1_555 71.4 ? 22 OP1 ? A DA 15 ? A DA 15 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 201 ? 2_545 127.3 ? 23 OP1 ? A DA 15 ? A DA 15 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 211 ? 6_555 72.5 ? 24 O ? I HOH . ? A HOH 201 ? 2_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 211 ? 6_555 151.0 ? 25 OP1 ? A DA 15 ? A DA 15 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 6_555 166.1 ? 26 O ? I HOH . ? A HOH 201 ? 2_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 6_555 60.1 ? 27 O ? I HOH . ? A HOH 211 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 6_555 106.1 ? 28 OP1 ? A DA 15 ? A DA 15 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 226 ? 6_555 86.2 ? 29 O ? I HOH . ? A HOH 201 ? 2_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 226 ? 6_555 65.5 ? 30 O ? I HOH . ? A HOH 211 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 226 ? 6_555 142.7 ? 31 O ? I HOH . ? A HOH 222 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 226 ? 6_555 87.4 ? 32 OP1 ? A DA 15 ? A DA 15 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 249 ? 1_555 111.6 ? 33 O ? I HOH . ? A HOH 201 ? 2_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 249 ? 1_555 61.9 ? 34 O ? I HOH . ? A HOH 211 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 249 ? 1_555 92.3 ? 35 O ? I HOH . ? A HOH 222 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 249 ? 1_555 82.2 ? 36 O ? I HOH . ? A HOH 226 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 249 ? 1_555 124.3 ? 37 OP1 ? A DA 15 ? A DA 15 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 251 ? 6_555 88.9 ? 38 O ? I HOH . ? A HOH 201 ? 2_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 251 ? 6_555 120.6 ? 39 O ? I HOH . ? A HOH 211 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 251 ? 6_555 75.8 ? 40 O ? I HOH . ? A HOH 222 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 251 ? 6_555 77.5 ? 41 O ? I HOH . ? A HOH 226 ? 6_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 251 ? 6_555 73.5 ? 42 O ? I HOH . ? A HOH 249 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 251 ? 6_555 152.3 ? 43 OP1 ? A DA 17 ? A DA 17 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 OP1 ? A DG 21 ? A DG 21 ? 1_555 71.6 ? 44 OP1 ? A DA 17 ? A DA 17 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 OP2 ? A DT 22 ? A DT 22 ? 1_555 66.1 ? 45 OP1 ? A DG 21 ? A DG 21 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 OP2 ? A DT 22 ? A DT 22 ? 1_555 5.6 ? 46 OP1 ? A DA 17 ? A DA 17 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 238 ? 1_555 76.5 ? 47 OP1 ? A DG 21 ? A DG 21 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 238 ? 1_555 7.7 ? 48 OP2 ? A DT 22 ? A DT 22 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 238 ? 1_555 12.7 ? 49 OP1 ? A DA 17 ? A DA 17 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 244 ? 2_544 71.1 ? 50 OP1 ? A DG 21 ? A DG 21 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 244 ? 2_544 3.0 ? 51 OP2 ? A DT 22 ? A DT 22 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 244 ? 2_544 6.6 ? 52 O ? I HOH . ? A HOH 238 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 244 ? 2_544 6.2 ? 53 OP1 ? A DA 17 ? A DA 17 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 253 ? 1_555 68.2 ? 54 OP1 ? A DG 21 ? A DG 21 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 253 ? 1_555 7.2 ? 55 OP2 ? A DT 22 ? A DT 22 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 253 ? 1_555 7.9 ? 56 O ? I HOH . ? A HOH 238 ? 1_555 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 253 ? 1_555 8.3 ? 57 O ? I HOH . ? A HOH 244 ? 2_544 NA ? C NA . ? A NA 102 ? 3_655 O ? I HOH . ? A HOH 253 ? 1_555 4.5 ? 58 O ? I HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 73.4 ? 59 O ? I HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 246 ? 4_545 136.9 ? 60 O ? I HOH . ? A HOH 216 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 246 ? 4_545 147.7 ? 61 O ? I HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 248 ? 4_545 72.0 ? 62 O ? I HOH . ? A HOH 216 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 248 ? 4_545 141.9 ? 63 O ? I HOH . ? A HOH 246 ? 4_545 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 248 ? 4_545 70.2 ? 64 O ? I HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 4_545 89.3 ? 65 O ? I HOH . ? A HOH 216 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 4_545 73.5 ? 66 O ? I HOH . ? A HOH 246 ? 4_545 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 4_545 110.7 ? 67 O ? I HOH . ? A HOH 248 ? 4_545 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 4_545 90.3 ? 68 O ? I HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 4_545 147.5 ? 69 O ? I HOH . ? A HOH 216 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 4_545 74.9 ? 70 O ? I HOH . ? A HOH 246 ? 4_545 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 4_545 75.6 ? 71 O ? I HOH . ? A HOH 248 ? 4_545 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 4_545 134.6 ? 72 O ? I HOH . ? A HOH 252 ? 4_545 NA ? E NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 4_545 74.7 ? 73 O ? I HOH . ? A HOH 212 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 81.6 ? 74 O ? I HOH . ? A HOH 212 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 232 ? 1_555 171.6 ? 75 O ? I HOH . ? A HOH 214 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 232 ? 1_555 90.2 ? 76 O ? I HOH . ? A HOH 212 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 274 ? 1_555 88.9 ? 77 O ? I HOH . ? A HOH 214 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 274 ? 1_555 89.1 ? 78 O ? I HOH . ? A HOH 232 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 274 ? 1_555 92.7 ? 79 O ? I HOH . ? A HOH 212 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 89.7 ? 80 O ? I HOH . ? A HOH 214 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 88.5 ? 81 O ? I HOH . ? A HOH 232 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 88.4 ? 82 O ? I HOH . ? A HOH 274 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 177.4 ? 83 O ? I HOH . ? A HOH 212 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 99.1 ? 84 O ? I HOH . ? A HOH 214 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 178.3 ? 85 O ? I HOH . ? A HOH 232 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 89.0 ? 86 O ? I HOH . ? A HOH 274 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 92.4 ? 87 O ? I HOH . ? A HOH 275 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 90.1 ? # _pdbx_entry_details.entry_id 8K0W _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A DG 4 ? ? O A HOH 201 ? ? 2.06 2 1 O A HOH 257 ? ? O A HOH 283 ? ? 2.09 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 206 ? ? 1_555 O A HOH 258 ? ? 2_544 2.11 2 1 O A HOH 245 ? ? 1_555 O A HOH 268 ? ? 4_545 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.382 1.419 -0.037 0.006 N 2 1 "O3'" A DA 11 ? ? "C3'" A DA 11 ? ? 1.376 1.419 -0.043 0.006 N 3 1 "O3'" A DC 20 ? ? "C3'" A DC 20 ? ? 1.379 1.419 -0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 99.21 105.70 -6.49 0.90 N 2 1 "O5'" A DT 5 ? ? P A DT 5 ? ? OP1 A DT 5 ? ? 120.03 110.70 9.33 1.20 N 3 1 "O5'" A DA 15 ? ? P A DA 15 ? ? OP1 A DA 15 ? ? 100.00 105.70 -5.70 0.90 N 4 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 103.80 108.00 -4.20 0.70 N 5 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? "C2'" A DG 21 ? ? 110.31 106.80 3.51 0.50 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 229 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 x-y,-y,-z+1/3 5 -x,-x+y,-z+2/3 6 y,x,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 13.8329410175 -9.2431269818 -2.88494094608 0.219861237093 ? -0.0477512839717 ? 0.0130345815929 ? 0.25958729682 ? 0.0508104503807 ? 0.206816472708 ? 1.99558440135 ? 1.03518971068 ? -0.741628968285 ? 2.58431790925 ? -2.15412031935 ? 5.49879173796 ? -0.0775707680099 ? 0.451080214016 ? 0.230179068085 ? -0.276354562161 ? 0.180670471508 ? 0.0890881433475 ? -0.383953200917 ? 0.0311055951457 ? -0.0819184204427 ? 2 'X-RAY DIFFRACTION' ? refined 16.447627262 -18.9477238973 13.2137432319 0.193762699941 ? -0.0130830976772 ? 0.005550442466 ? 0.189253550006 ? 0.0252632854377 ? 0.145648668048 ? 2.2288898847 ? -0.991371788921 ? -0.47718837799 ? 4.8951486122 ? 3.90450938071 ? 3.20918850563 ? -0.0424078432143 ? -0.0716166360366 ? -0.0789406293299 ? 0.43132240936 ? -0.000225264348398 ? 0.205922232029 ? 0.505617226305 ? -0.0355043714415 ? 0.111893903482 ? 3 'X-RAY DIFFRACTION' ? refined 14.8970962614 -9.7815046573 -1.43333246355 0.187448138926 ? 0.0203968670766 ? 0.00359713352828 ? 0.211086912784 ? 0.0344084170083 ? 0.163252527134 ? 2.42077632619 ? 0.704849876685 ? -0.590486578101 ? 2.97547782602 ? -0.793671133575 ? 2.75970958459 ? 0.188898847894 ? 0.33181356082 ? 0.212141431452 ? -0.128546560473 ? 0.0697686619422 ? 0.349713679196 ? -0.324389329407 ? -0.131482798194 ? -0.229260004459 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 10 ? ? ;chain 'A' and (resid 1 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 11 ? A ? A 15 ? ? ;chain 'A' and (resid 11 through 15 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 16 ? A ? A 29 ? ? ;chain 'A' and (resid 16 through 29 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 NA NA NA N N 148 TEP C1 C N N 149 TEP N1 N Y N 150 TEP C2 C Y N 151 TEP O2 O N N 152 TEP N3 N Y N 153 TEP C3 C N N 154 TEP C4 C Y N 155 TEP C5 C Y N 156 TEP C6 C Y N 157 TEP O6 O N N 158 TEP N7 N Y N 159 TEP C8 C Y N 160 TEP N9 N Y N 161 TEP H11 H N N 162 TEP H12 H N N 163 TEP H13 H N N 164 TEP H31 H N N 165 TEP H32 H N N 166 TEP H33 H N N 167 TEP HN7 H N N 168 TEP H8 H N N 169 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 TEP C1 N1 sing N N 152 TEP C1 H11 sing N N 153 TEP C1 H12 sing N N 154 TEP C1 H13 sing N N 155 TEP N1 C2 sing Y N 156 TEP N1 C6 sing Y N 157 TEP C2 O2 doub N N 158 TEP C2 N3 sing Y N 159 TEP N3 C3 sing N N 160 TEP N3 C4 sing Y N 161 TEP C3 H31 sing N N 162 TEP C3 H32 sing N N 163 TEP C3 H33 sing N N 164 TEP C4 C5 doub Y N 165 TEP C4 N9 sing Y N 166 TEP C5 C6 sing Y N 167 TEP C5 N7 sing Y N 168 TEP C6 O6 doub N N 169 TEP N7 C8 sing Y N 170 TEP N7 HN7 sing N N 171 TEP C8 N9 doub Y N 172 TEP C8 H8 sing N N 173 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8K0W 'double helix' 8K0W 'b-form double helix' 8K0W 'hairpin loop' 8K0W 'mismatched base pair' 8K0W 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 29 1_555 -0.028 -0.170 -0.034 -2.427 -1.334 -0.159 1 A_DG1:DC29_A A 1 ? A 29 ? 19 1 1 A DC 2 1_555 A DG 28 1_555 -0.019 -0.180 0.384 -9.339 -13.282 -2.180 2 A_DC2:DG28_A A 2 ? A 28 ? 19 1 1 A DG 3 1_555 A DC 27 1_555 -0.240 -0.174 0.098 -0.151 -11.510 -1.145 3 A_DG3:DC27_A A 3 ? A 27 ? 19 1 1 A DG 4 1_555 A DC 26 1_555 -0.298 -0.105 -0.063 -2.200 -11.610 2.797 4 A_DG4:DC26_A A 4 ? A 26 ? 19 1 1 A DT 5 1_555 A DG 25 1_555 2.441 -0.659 0.066 -4.134 -12.177 -3.687 5 A_DT5:DG25_A A 5 ? A 25 ? 28 1 1 A DG 6 1_555 A DC 24 1_555 -0.291 -0.203 0.133 1.430 -6.334 0.849 6 A_DG6:DC24_A A 6 ? A 24 ? 19 1 1 A DG 7 1_555 A DC 23 1_555 -0.206 -0.195 0.170 1.071 -9.912 0.651 7 A_DG7:DC23_A A 7 ? A 23 ? 19 1 1 A DC 9 1_555 A DG 21 1_555 0.411 -0.239 0.329 11.386 -11.718 -1.934 8 A_DC9:DG21_A A 9 ? A 21 ? 19 1 1 A DA 11 1_555 A DT 16 1_555 0.008 -0.095 0.075 -9.576 -5.498 6.247 9 A_DA11:DT16_A A 11 ? A 16 ? 20 1 1 A DT 12 1_555 A DA 15 1_555 -0.733 3.607 -0.499 12.288 -6.213 -69.839 10 A_DT12:DA15_A A 12 ? A 15 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 29 1_555 A DC 2 1_555 A DG 28 1_555 -0.613 0.265 3.447 -3.016 -5.552 36.590 1.200 0.537 3.410 -8.763 4.760 37.113 1 AA_DG1DC2:DG28DC29_AA A 1 ? A 29 ? A 2 ? A 28 ? 1 A DC 2 1_555 A DG 28 1_555 A DG 3 1_555 A DC 27 1_555 -0.250 0.501 3.202 2.148 7.672 30.492 -0.504 0.860 3.205 14.284 -3.999 31.492 2 AA_DC2DG3:DC27DG28_AA A 2 ? A 28 ? A 3 ? A 27 ? 1 A DG 3 1_555 A DC 27 1_555 A DG 4 1_555 A DC 26 1_555 0.527 -0.076 3.420 0.242 5.395 32.939 -1.067 -0.876 3.369 9.435 -0.423 33.366 3 AA_DG3DG4:DC26DC27_AA A 3 ? A 27 ? A 4 ? A 26 ? 1 A DG 4 1_555 A DC 26 1_555 A DT 5 1_555 A DG 25 1_555 0.021 -0.355 3.416 -0.547 -2.255 39.572 -0.247 -0.098 3.430 -3.328 0.807 39.637 4 AA_DG4DT5:DG25DC26_AA A 4 ? A 26 ? A 5 ? A 25 ? 1 A DT 5 1_555 A DG 25 1_555 A DG 6 1_555 A DC 24 1_555 -0.146 -0.111 3.054 2.106 7.963 26.852 -1.972 0.762 2.882 16.657 -4.405 28.065 5 AA_DT5DG6:DC24DG25_AA A 5 ? A 25 ? A 6 ? A 24 ? 1 A DG 6 1_555 A DC 24 1_555 A DG 7 1_555 A DC 23 1_555 0.254 -0.385 3.291 -2.481 7.746 29.780 -2.215 -0.956 3.066 14.729 4.717 30.846 6 AA_DG6DG7:DC23DC24_AA A 6 ? A 24 ? A 7 ? A 23 ? 1 A DG 7 1_555 A DC 23 1_555 A DC 9 1_555 A DG 21 1_555 0.789 -1.732 6.186 -0.450 3.128 65.453 -1.842 -0.764 6.102 2.891 0.416 65.520 7 AA_DG7DC9:DG21DC23_AA A 7 ? A 23 ? A 9 ? A 21 ? 1 A DC 9 1_555 A DG 21 1_555 A DA 11 1_555 A DT 16 1_555 5.557 -0.896 4.069 -1.739 -0.697 110.570 -0.535 -3.406 4.014 -0.424 1.058 110.580 8 AA_DC9DA11:DT16DG21_AA A 9 ? A 21 ? A 11 ? A 16 ? 1 A DA 11 1_555 A DT 16 1_555 A DT 12 1_555 A DA 15 1_555 1.488 -1.884 2.948 1.979 2.324 73.541 -1.639 -1.186 2.930 1.941 -1.652 73.595 9 AA_DA11DT12:DA15DT16_AA A 11 ? A 16 ? A 12 ? A 15 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8K0T _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 32 2 1' _space_group.name_Hall ;P 32 2" ; _space_group.IT_number 154 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8K0W _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019953 _atom_sites.fract_transf_matrix[1][2] 0.011520 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023040 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019681 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #