data_8K0Y # _entry.id 8K0Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8K0Y pdb_00008k0y 10.2210/pdb8k0y/pdb WWPDB D_1300039207 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-01-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8K0Y _pdbx_database_status.recvd_initial_deposition_date 2023-07-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, Y.' 1 ? 'Deng, J.' 2 ? 'Lin, X.' 3 ? 'Huang, L.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of mascRNA and menRNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, Y.' 1 ? primary 'Deng, J.' 2 ? primary 'Lin, X.' 3 ? primary 'Huang, L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (56-MER)' 18004.605 2 ? U23G ? ? 2 non-polymer syn 'IRIDIUM ION' 192.217 7 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 13 ? ? ? ? 4 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GACGCCGGUGGUGGCACUCCUGGUUUUCAGGACGGGGUUCAAUUCCCUGCGGUGUC _entity_poly.pdbx_seq_one_letter_code_can GACGCCGGUGGUGGCACUCCUGGUUUUCAGGACGGGGUUCAAUUCCCUGCGGUGUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM ION' IR 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 G n 1 5 C n 1 6 C n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 G n 1 15 C n 1 16 A n 1 17 C n 1 18 U n 1 19 C n 1 20 C n 1 21 U n 1 22 G n 1 23 G n 1 24 U n 1 25 U n 1 26 U n 1 27 U n 1 28 C n 1 29 A n 1 30 G n 1 31 G n 1 32 A n 1 33 C n 1 34 G n 1 35 G n 1 36 G n 1 37 G n 1 38 U n 1 39 U n 1 40 C n 1 41 A n 1 42 A n 1 43 U n 1 44 U n 1 45 C n 1 46 C n 1 47 C n 1 48 U n 1 49 G n 1 50 C n 1 51 G n 1 52 G n 1 53 U n 1 54 G n 1 55 U n 1 56 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 56 _pdbx_entity_src_syn.organism_scientific 'Oryzias latipes' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 8090 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IR non-polymer . 'IRIDIUM ION' ? 'Ir 4' 192.217 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 ? ? ? A . n A 1 24 U 24 24 ? ? ? A . n A 1 25 U 25 25 ? ? ? A . n A 1 26 U 26 26 ? ? ? A . n A 1 27 U 27 27 ? ? ? A . n A 1 28 C 28 28 ? ? ? A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 G 31 31 31 G G A . n A 1 32 A 32 32 32 A A A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 A 42 42 42 A A A . n A 1 43 U 43 43 43 U U A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 C 47 47 47 C C A . n A 1 48 U 48 48 48 U U A . n A 1 49 G 49 49 49 G G A . n A 1 50 C 50 50 50 C C A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 U 53 53 53 U U A . n A 1 54 G 54 54 54 G G A . n A 1 55 U 55 55 55 U U A . n A 1 56 C 56 56 56 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 A 2 2 2 A A B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 G 8 8 8 G G B . n B 1 9 U 9 9 9 U U B . n B 1 10 G 10 10 10 G G B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 ? ? ? B . n B 1 13 G 13 13 13 G G B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 U 18 18 18 U U B . n B 1 19 C 19 19 19 C C B . n B 1 20 C 20 20 20 C C B . n B 1 21 U 21 21 21 U U B . n B 1 22 G 22 22 22 G G B . n B 1 23 G 23 23 23 G G B . n B 1 24 U 24 24 ? ? ? B . n B 1 25 U 25 25 ? ? ? B . n B 1 26 U 26 26 ? ? ? B . n B 1 27 U 27 27 ? ? ? B . n B 1 28 C 28 28 ? ? ? B . n B 1 29 A 29 29 29 A A B . n B 1 30 G 30 30 30 G G B . n B 1 31 G 31 31 31 G G B . n B 1 32 A 32 32 32 A A B . n B 1 33 C 33 33 33 C C B . n B 1 34 G 34 34 34 G G B . n B 1 35 G 35 35 35 G G B . n B 1 36 G 36 36 36 G G B . n B 1 37 G 37 37 37 G G B . n B 1 38 U 38 38 38 U U B . n B 1 39 U 39 39 39 U U B . n B 1 40 C 40 40 40 C C B . n B 1 41 A 41 41 41 A A B . n B 1 42 A 42 42 42 A A B . n B 1 43 U 43 43 43 U U B . n B 1 44 U 44 44 44 U U B . n B 1 45 C 45 45 45 C C B . n B 1 46 C 46 46 46 C C B . n B 1 47 C 47 47 47 C C B . n B 1 48 U 48 48 48 U U B . n B 1 49 G 49 49 49 G G B . n B 1 50 C 50 50 50 C C B . n B 1 51 G 51 51 51 G G B . n B 1 52 G 52 52 52 G G B . n B 1 53 U 53 53 53 U U B . n B 1 54 G 54 54 54 G G B . n B 1 55 U 55 55 55 U U B . n B 1 56 C 56 56 56 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IR 1 101 1 IR IR A . D 2 IR 1 102 4 IR IR A . E 2 IR 1 103 5 IR IR A . F 2 IR 1 104 6 IR IR A . G 3 NA 1 105 1 NA NA A . H 3 NA 1 106 3 NA NA A . I 3 NA 1 107 5 NA NA A . J 3 NA 1 108 7 NA NA A . K 3 NA 1 109 9 NA NA A . L 2 IR 1 101 2 IR IR B . M 2 IR 1 102 3 IR IR B . N 2 IR 1 103 7 IR IR B . O 3 NA 1 104 2 NA NA B . P 3 NA 1 105 4 NA NA B . Q 3 NA 1 106 6 NA NA B . R 3 NA 1 107 8 NA NA B . S 3 NA 1 108 10 NA NA B . T 3 NA 1 109 11 NA NA B . U 3 NA 1 110 12 NA NA B . V 3 NA 1 111 13 NA NA B . W 4 HOH 1 201 10 HOH HOH A . W 4 HOH 2 202 8 HOH HOH A . W 4 HOH 3 203 1 HOH HOH A . W 4 HOH 4 204 2 HOH HOH A . W 4 HOH 5 205 9 HOH HOH A . W 4 HOH 6 206 7 HOH HOH A . W 4 HOH 7 207 14 HOH HOH A . X 4 HOH 1 201 6 HOH HOH B . X 4 HOH 2 202 4 HOH HOH B . X 4 HOH 3 203 12 HOH HOH B . X 4 HOH 4 204 13 HOH HOH B . X 4 HOH 5 205 11 HOH HOH B . X 4 HOH 6 206 3 HOH HOH B . X 4 HOH 7 207 5 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 118.560 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8K0Y _cell.details ? _cell.formula_units_Z ? _cell.length_a 159.360 _cell.length_a_esd ? _cell.length_b 29.250 _cell.length_b_esd ? _cell.length_c 98.080 _cell.length_c_esd ? _cell.volume 401547.488 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8K0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8K0Y _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Strontium chloride hexahydrate, 0.02 M Magnesium chloride hexahydrate, 18% v/v (+ / -)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-04-23 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 63.97 _reflns.entry_id 8K0Y _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.28 _reflns.d_resolution_low 28.72 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17707 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.28 _reflns_shell.d_res_low 2.34 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1336 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.618 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.174 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8K0Y _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.28 _refine.ls_d_res_low 28.08 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17707 _refine.ls_number_reflns_R_free 946 _refine.ls_number_reflns_R_work 32731 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.28 _refine.ls_percent_reflns_R_free 5.09 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2854 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2486 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 38.1786 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3618 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.28 _refine_hist.d_res_low 28.08 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 2175 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2141 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0049 ? 2387 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9610 ? 3713 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0408 ? 500 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0076 ? 100 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.7107 ? 1185 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 0.947020664154 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id A _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.28 2.34 . . 145 2489 98.21 . . . . 0.4235 . . . . . . . . . . . 0.4527 'X-RAY DIFFRACTION' 2.34 2.41 . . 153 2577 98.73 . . . . 0.3853 . . . . . . . . . . . 0.4188 'X-RAY DIFFRACTION' 2.41 2.49 . . 139 2535 98.64 . . . . 0.3429 . . . . . . . . . . . 0.4083 'X-RAY DIFFRACTION' 2.49 2.58 . . 128 2593 99.63 . . . . 0.3328 . . . . . . . . . . . 0.3508 'X-RAY DIFFRACTION' 2.58 2.68 . . 132 2634 99.46 . . . . 0.3202 . . . . . . . . . . . 0.3632 'X-RAY DIFFRACTION' 2.68 2.80 . . 120 2494 98.75 . . . . 0.3128 . . . . . . . . . . . 0.3220 'X-RAY DIFFRACTION' 2.80 2.95 . . 130 2534 95.79 . . . . 0.3002 . . . . . . . . . . . 0.3296 'X-RAY DIFFRACTION' 2.95 3.13 . . 147 2381 93.91 . . . . 0.2273 . . . . . . . . . . . 0.2773 'X-RAY DIFFRACTION' 3.13 3.38 . . 153 2438 94.67 . . . . 0.1982 . . . . . . . . . . . 0.3002 'X-RAY DIFFRACTION' 3.38 3.71 . . 129 2494 95.83 . . . . 0.2050 . . . . . . . . . . . 0.2333 'X-RAY DIFFRACTION' 3.72 4.25 . . 135 2543 97.49 . . . . 0.1794 . . . . . . . . . . . 0.2117 'X-RAY DIFFRACTION' 4.25 5.35 . . 104 2519 97.26 . . . . 0.2049 . . . . . . . . . . . 0.2535 'X-RAY DIFFRACTION' 5.35 28.08 . . 142 2500 96.39 . . . . 0.2631 . . . . . . . . . . . 0.2720 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] -0.999187717128 _struct_ncs_oper.matrix[1][2] 0.0399312903662 _struct_ncs_oper.matrix[1][3] 0.00542199129745 _struct_ncs_oper.matrix[2][1] -0.039817234732 _struct_ncs_oper.matrix[2][2] -0.999012241863 _struct_ncs_oper.matrix[2][3] 0.019726338368 _struct_ncs_oper.matrix[3][1] 0.00620433382666 _struct_ncs_oper.matrix[3][2] 0.019494426301 _struct_ncs_oper.matrix[3][3] 0.999790714892 _struct_ncs_oper.vector[1] 65.4770424131 _struct_ncs_oper.vector[2] 57.9083369761 _struct_ncs_oper.vector[3] 0.501926491904 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 1 through 11 or resid 13 through 56)) ; ens_1 d_2 ;(chain "B" and (resid 1 through 22 or resid 29 through 56)) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A G 1 . A C 3 . A G 1 A C 3 ? ? ens_1 d_2 1 B G 1 . B C 3 . B G 1 B C 3 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 8K0Y _struct.title 'Crystal structure of a medaka mascRNA U23G' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8K0Y _struct_keywords.text 'MascRNA, tRNA-like, MALAT1, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 3 ? W N N 4 ? X N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8K0Y _struct_ref.pdbx_db_accession 8K0Y _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8K0Y A 1 ? 56 ? 8K0Y 1 ? 56 ? 1 56 2 1 8K0Y B 1 ? 56 ? 8K0Y 1 ? 56 ? 1 56 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 150 ? 1 MORE -11 ? 1 'SSA (A^2)' 8530 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 8 OP1 ? ? ? 1_555 G NA . NA ? ? A G 8 A NA 105 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc2 metalc ? ? A C 33 OP2 ? ? ? 1_555 H NA . NA ? ? A C 33 A NA 106 1_555 ? ? ? ? ? ? ? 3.061 ? ? metalc3 metalc ? ? A U 39 O4 ? ? ? 1_555 I NA . NA ? ? A U 39 A NA 107 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc4 metalc ? ? A U 43 O2 ? ? ? 1_555 G NA . NA ? ? A U 43 A NA 105 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc5 metalc ? ? B G 8 OP1 ? ? ? 1_555 V NA . NA ? ? B G 8 B NA 111 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc6 metalc ? ? B G 35 O6 ? ? ? 1_555 S NA . NA ? ? B G 35 B NA 108 1_555 ? ? ? ? ? ? ? 3.179 ? ? metalc7 metalc ? ? B G 36 O6 ? ? ? 1_555 S NA . NA ? ? B G 36 B NA 108 1_555 ? ? ? ? ? ? ? 2.601 ? ? metalc8 metalc ? ? B U 38 O4 ? ? ? 1_555 T NA . NA ? ? B U 38 B NA 109 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc9 metalc ? ? B U 39 O4 ? ? ? 1_555 T NA . NA ? ? B U 39 B NA 109 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc10 metalc ? ? B U 43 O2 ? ? ? 1_555 V NA . NA ? ? B U 43 B NA 111 1_555 ? ? ? ? ? ? ? 2.946 ? ? metalc11 metalc ? ? M IR . IR ? ? ? 1_555 X HOH . O ? ? B IR 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc12 metalc ? ? T NA . NA ? ? ? 1_555 X HOH . O ? ? B NA 109 B HOH 202 1_555 ? ? ? ? ? ? ? 3.053 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 1 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 1 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 1 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 2 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 2 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 3 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 3 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 3 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 53 O2 ? ? A G 4 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 53 N3 ? ? A G 4 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 6 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 6 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 6 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 7 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 7 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 7 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 16 N1 ? ? A U 9 A A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 16 N6 ? ? A U 9 A A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 44 O2 ? ? A G 11 A U 44 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 A U 39 O2 ? ? A G 13 A U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 18 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 32 N6 ? ? A U 18 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 19 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 19 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 19 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 21 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 21 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 33 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 33 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 33 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 34 N1 ? ? ? 1_555 A U 48 O2 ? ? A G 34 A U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A G 34 O6 ? ? ? 1_555 A U 48 N3 ? ? A G 34 A U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 36 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 36 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 36 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 37 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 37 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 37 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 38 N3 ? ? ? 1_555 A A 42 N7 ? ? A U 38 A A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? A U 38 O2 ? ? ? 1_555 A A 42 N6 ? ? A U 38 A A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog59 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 1 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 1 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 1 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 55 N3 ? ? B A 2 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B A 2 N6 ? ? ? 1_555 B U 55 O4 ? ? B A 2 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 54 N1 ? ? B C 3 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 54 O6 ? ? B C 3 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 54 N2 ? ? B C 3 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 4 N1 ? ? ? 1_555 B U 53 O2 ? ? B G 4 B U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? B G 4 O6 ? ? ? 1_555 B U 53 N3 ? ? B G 4 B U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? B C 5 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? B C 5 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? B C 5 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 6 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 6 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 6 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 7 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 7 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 7 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 16 N1 ? ? B U 9 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 16 N6 ? ? B U 9 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 13 N1 ? ? ? 1_555 B U 39 O2 ? ? B G 13 B U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog87 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 14 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 14 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 14 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 15 N4 ? ? ? 1_555 B U 43 O4 ? ? B C 15 B U 43 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog91 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 32 N1 ? ? B U 18 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 32 N6 ? ? B U 18 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 19 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 19 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 19 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 21 N3 ? ? ? 1_555 B A 29 N1 ? ? B U 21 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B U 21 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 21 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 33 N3 ? ? ? 1_555 B G 49 N1 ? ? B C 33 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B C 33 N4 ? ? ? 1_555 B G 49 O6 ? ? B C 33 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 33 O2 ? ? ? 1_555 B G 49 N2 ? ? B C 33 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 34 N1 ? ? ? 1_555 B U 48 O2 ? ? B G 34 B U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog105 hydrog ? ? B G 34 O6 ? ? ? 1_555 B U 48 N3 ? ? B G 34 B U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog106 hydrog ? ? B G 35 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 35 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 35 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 35 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 35 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 35 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 36 N1 ? ? ? 1_555 B C 46 N3 ? ? B G 36 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 36 N2 ? ? ? 1_555 B C 46 O2 ? ? B G 36 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B G 36 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 36 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B G 37 N1 ? ? ? 1_555 B C 45 N3 ? ? B G 37 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 37 N2 ? ? ? 1_555 B C 45 O2 ? ? B G 37 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 37 O6 ? ? ? 1_555 B C 45 N4 ? ? B G 37 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B U 38 N3 ? ? ? 1_555 B A 42 N7 ? ? B U 38 B A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog116 hydrog ? ? B U 38 O2 ? ? ? 1_555 B A 42 N6 ? ? B U 38 B A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 8 ? A G 8 ? 1_555 NA ? G NA . ? A NA 105 ? 1_555 O2 ? A U 43 ? A U 43 ? 1_555 169.0 ? 2 OP1 ? B G 8 ? B G 8 ? 1_555 NA ? V NA . ? B NA 111 ? 1_555 O2 ? B U 43 ? B U 43 ? 1_555 129.5 ? 3 O6 ? B G 35 ? B G 35 ? 1_555 NA ? S NA . ? B NA 108 ? 1_555 O6 ? B G 36 ? B G 36 ? 1_555 67.8 ? 4 O4 ? B U 38 ? B U 38 ? 1_555 NA ? T NA . ? B NA 109 ? 1_555 O4 ? B U 39 ? B U 39 ? 1_555 73.8 ? 5 O4 ? B U 38 ? B U 38 ? 1_555 NA ? T NA . ? B NA 109 ? 1_555 O ? X HOH . ? B HOH 202 ? 1_555 106.6 ? 6 O4 ? B U 39 ? B U 39 ? 1_555 NA ? T NA . ? B NA 109 ? 1_555 O ? X HOH . ? B HOH 202 ? 1_555 49.0 ? # _pdbx_entry_details.entry_id 8K0Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 201 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 206 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 42 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 42 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 42 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.19 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -6.51 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 55.82035601 22.3776793511 54.8068546322 0.581013158377 ? 0.0144842695691 ? -0.089558371527 ? 0.539770637541 ? 0.00107058080861 ? 0.804613974815 ? 0.388776373972 ? -0.414153989705 ? 0.132833400738 ? 0.432873206626 ? 0.171437572876 ? 0.375635104953 ? 0.231550281422 ? 0.494604846465 ? -0.487653320786 ? 0.273020408557 ? -0.307599811354 ? 0.423336255045 ? 0.139203513205 ? 0.29162932995 ? 9.91357397486e-05 ? 2 'X-RAY DIFFRACTION' ? refined 58.0155083824 14.0769729231 68.2263399994 1.03497134831 ? -0.10106414549 ? -0.327331193354 ? 0.944058809628 ? 0.21511536446 ? 0.510591545505 ? 1.44473802201 ? 0.372890295312 ? 0.0285148855412 ? 0.0944857042341 ? 0.0227046953004 ? 0.166146558408 ? 0.330337511974 ? -1.15008471755 ? -1.25663511542 ? 0.435199463079 ? -0.231745793841 ? -0.602499468508 ? -0.0570699197838 ? 0.191508007767 ? 0.00995062841465 ? 3 'X-RAY DIFFRACTION' ? refined 52.4522262234 16.4255331741 52.4879253259 0.592161288529 ? 0.0780597490368 ? -0.0106572039469 ? 0.608417597918 ? 0.0415499423629 ? 0.521347405808 ? 1.22053420546 ? 0.517532299908 ? -0.567823208438 ? 0.240893283752 ? -0.110928905915 ? 0.32885644177 ? -0.372518046674 ? 0.0195292389569 ? -0.291871327191 ? 0.558031121023 ? 0.13413263511 ? 0.204258946948 ? 0.00714495502453 ? 0.238043590811 ? 0.000705894393431 ? 4 'X-RAY DIFFRACTION' ? refined 10.5975636829 34.5846698053 57.0908330335 0.655427979266 ? 0.0714102919981 ? 0.0613754666171 ? 0.654097175191 ? -0.157635946553 ? 0.696890280603 ? 0.796487751761 ? 0.491202529724 ? 0.471856301461 ? 0.282585780668 ? 0.430513782862 ? 0.540454434684 ? 0.425601190846 ? 0.989051687108 ? -0.119380245787 ? 0.401015550766 ? 0.0526659088581 ? -0.378190244382 ? 0.0454777582013 ? -0.459519680328 ? 0.0353326102863 ? 5 'X-RAY DIFFRACTION' ? refined 5.83070057999 42.5134808269 76.4582617034 1.73857415733 ? -0.111849608989 ? 0.285762709118 ? 1.48449276036 ? -0.23737977189 ? 0.80454064261 ? 0.0709875002973 ? -0.046365538459 ? 0.0416622755622 ? 0.61217234125 ? 0.098059370287 ? 0.0509334940607 ? 0.494469553365 ? -1.27142506487 ? 0.946839326146 ? 0.564397141936 ? 0.74661699981 ? 0.330039231991 ? -0.841924948451 ? 0.395237571281 ? 0.0337118377584 ? 6 'X-RAY DIFFRACTION' ? refined 9.08287774895 48.6085754792 55.1679054288 0.759890263473 ? 0.0902744735685 ? 0.0572087689947 ? 0.76098253297 ? 0.0411146700042 ? 0.763282532504 ? 0.40877886701 ? 0.00178265175071 ? -0.213327167026 ? 0.13503793375 ? 0.164047946353 ? 0.280989836268 ? -0.247124042025 ? 0.0598153408565 ? 0.231832169939 ? 0.471918563287 ? 0.228111797441 ? 0.495339828738 ? -0.16525571356 ? -0.540916727736 ? -0.000635924163327 ? 7 'X-RAY DIFFRACTION' ? refined 17.9151574168 36.6974504746 54.5609057293 0.608724753734 ? 0.0545625502586 ? -0.0321770154861 ? 0.630759906504 ? -0.165491296365 ? 0.992224031839 ? 0.542229571017 ? 0.539609413923 ? 0.118773117807 ? 0.515568809226 ? 0.147289528707 ? -0.0122242940837 ? -0.2343910585 ? 0.393004702501 ? -0.679773023853 ? 0.331755311302 ? 0.26847809324 ? -0.875006229397 ? -0.0334401587061 ? -0.146612976019 ? 0.00305328307418 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 15 ? ? ;chain 'A' and (resid 1 through 15 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 16 ? A ? A 36 ? ? ;chain 'A' and (resid 16 through 36 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 37 ? A ? A 56 ? ? ;chain 'A' and (resid 37 through 56 ) ; 4 'X-RAY DIFFRACTION' 4 B ? B 1 ? B ? B 16 ? ? ;chain 'B' and (resid 1 through 16 ) ; 5 'X-RAY DIFFRACTION' 5 B ? B 17 ? B ? B 31 ? ? ;chain 'B' and (resid 17 through 31 ) ; 6 'X-RAY DIFFRACTION' 6 B ? B 32 ? B ? B 41 ? ? ;chain 'B' and (resid 32 through 41 ) ; 7 'X-RAY DIFFRACTION' 7 B ? B 42 ? B ? B 56 ? ? ;chain 'B' and (resid 42 through 56 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 23 ? A G 23 2 1 Y 1 A U 24 ? A U 24 3 1 Y 1 A U 25 ? A U 25 4 1 Y 1 A U 26 ? A U 26 5 1 Y 1 A U 27 ? A U 27 6 1 Y 1 A C 28 ? A C 28 7 1 Y 1 B U 12 ? B U 12 8 1 Y 1 B U 24 ? B U 24 9 1 Y 1 B U 25 ? B U 25 10 1 Y 1 B U 26 ? B U 26 11 1 Y 1 B U 27 ? B U 27 12 1 Y 1 B C 28 ? B C 28 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 IR IR IR N N 114 NA NA NA N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8K0Y 'double helix' 8K0Y 'a-form double helix' 8K0Y 'parallel strands' 8K0Y 'hairpin loop' 8K0Y 'bulge loop' 8K0Y 'mismatched base pair' 8K0Y 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 29 1_555 A U 21 1_555 -0.016 -0.124 0.196 0.255 -2.979 0.293 1 A_A29:U21_A A 29 ? A 21 ? 20 1 1 A G 30 1_555 A C 20 1_555 -0.138 -0.139 0.347 -0.466 -2.448 0.934 2 A_G30:C20_A A 30 ? A 20 ? 19 1 1 A G 31 1_555 A C 19 1_555 -0.148 -0.124 0.291 -3.922 -3.859 0.177 3 A_G31:C19_A A 31 ? A 19 ? 19 1 1 A A 32 1_555 A U 18 1_555 0.124 -0.102 0.321 1.883 -7.912 2.381 4 A_A32:U18_A A 32 ? A 18 ? 20 1 1 A G 8 1_555 A C 17 1_555 -0.204 -0.178 0.012 -3.594 -3.371 2.093 5 A_G8:C17_A A 8 ? A 17 ? 19 1 1 A U 9 1_555 A A 16 1_555 -0.122 -0.091 -0.015 -5.734 -2.684 3.041 6 A_U9:A16_A A 9 ? A 16 ? 20 1 1 A G 10 1_555 A C 15 1_555 -0.210 -0.152 -0.077 -6.027 -9.036 1.661 7 A_G10:C15_A A 10 ? A 15 ? 19 1 1 A G 11 1_555 A U 44 1_555 -0.575 5.286 0.461 -18.268 5.166 118.230 8 A_G11:U44_A A 11 ? A 44 ? ? 2 1 A G 13 1_555 A U 39 1_555 -0.559 5.437 -0.078 -23.115 -9.257 95.305 9 A_G13:U39_A A 13 ? A 39 ? ? 6 1 A A 42 1_555 A U 38 1_555 -4.213 -2.132 0.394 4.574 13.006 -98.361 10 A_A42:U38_A A 42 ? A 38 ? 24 4 1 A C 45 1_555 A G 37 1_555 0.157 -0.237 0.239 13.808 -9.075 -3.000 11 A_C45:G37_A A 45 ? A 37 ? 19 1 1 A C 46 1_555 A G 36 1_555 0.049 -0.084 0.078 7.293 -7.448 -1.960 12 A_C46:G36_A A 46 ? A 36 ? 19 1 1 A C 47 1_555 A G 35 1_555 0.131 -0.120 0.051 5.887 -8.917 0.238 13 A_C47:G35_A A 47 ? A 35 ? 19 1 1 A U 48 1_555 A G 34 1_555 2.397 -0.621 0.089 1.363 -10.803 -2.806 14 A_U48:G34_A A 48 ? A 34 ? 28 1 1 A G 49 1_555 A C 33 1_555 -0.132 -0.156 0.096 -3.259 -2.888 1.768 15 A_G49:C33_A A 49 ? A 33 ? 19 1 1 A C 50 1_555 A G 7 1_555 0.211 -0.198 0.319 -7.064 -8.807 -4.037 16 A_C50:G7_A A 50 ? A 7 ? 19 1 1 A G 51 1_555 A C 6 1_555 -0.220 -0.156 0.338 0.970 -13.210 1.936 17 A_G51:C6_A A 51 ? A 6 ? 19 1 1 A G 52 1_555 A C 5 1_555 -0.189 -0.197 0.164 -2.562 -11.303 0.952 18 A_G52:C5_A A 52 ? A 5 ? 19 1 1 A U 53 1_555 A G 4 1_555 2.189 -0.627 -0.100 1.125 -10.851 -0.678 19 A_U53:G4_A A 53 ? A 4 ? 28 1 1 A G 54 1_555 A C 3 1_555 -0.184 -0.317 0.344 -2.626 -12.733 -1.390 20 A_G54:C3_A A 54 ? A 3 ? 19 1 1 A U 55 1_555 A A 2 1_555 -0.067 -0.208 0.328 -4.274 -14.814 -2.837 21 A_U55:A2_A A 55 ? A 2 ? 20 1 1 A C 56 1_555 A G 1 1_555 0.207 -0.156 0.203 2.343 -4.592 -0.335 22 A_C56:G1_A A 56 ? A 1 ? 19 1 1 B G 1 1_555 B C 56 1_555 -0.176 -0.219 0.325 -1.643 -9.028 -3.429 23 B_G1:C56_B B 1 ? B 56 ? 19 1 1 B A 2 1_555 B U 55 1_555 0.022 -0.173 0.326 8.161 -12.395 -5.034 24 B_A2:U55_B B 2 ? B 55 ? 20 1 1 B C 3 1_555 B G 54 1_555 0.189 -0.223 0.243 4.690 -14.482 -1.198 25 B_C3:G54_B B 3 ? B 54 ? 19 1 1 B G 4 1_555 B U 53 1_555 -2.265 -0.567 0.317 2.693 -8.718 -0.207 26 B_G4:U53_B B 4 ? B 53 ? 28 1 1 B C 5 1_555 B G 52 1_555 0.254 -0.216 0.244 -1.460 -7.356 1.699 27 B_C5:G52_B B 5 ? B 52 ? 19 1 1 B C 6 1_555 B G 51 1_555 0.050 -0.189 0.475 -3.195 -10.023 -0.165 28 B_C6:G51_B B 6 ? B 51 ? 19 1 1 B G 7 1_555 B C 50 1_555 -0.157 -0.172 0.014 4.215 -8.047 -5.042 29 B_G7:C50_B B 7 ? B 50 ? 19 1 1 B C 33 1_555 B G 49 1_555 0.227 -0.190 -0.236 4.827 -7.669 3.108 30 B_C33:G49_B B 33 ? B 49 ? 19 1 1 B G 34 1_555 B U 48 1_555 -2.520 -0.465 0.223 -1.093 -10.435 4.061 31 B_G34:U48_B B 34 ? B 48 ? 28 1 1 B G 35 1_555 B C 47 1_555 -0.203 -0.203 0.245 -3.952 -7.718 -1.940 32 B_G35:C47_B B 35 ? B 47 ? 19 1 1 B G 36 1_555 B C 46 1_555 -0.199 -0.147 -0.005 -7.232 -9.369 -0.720 33 B_G36:C46_B B 36 ? B 46 ? 19 1 1 B G 37 1_555 B C 45 1_555 -0.194 -0.109 0.191 -13.513 -11.850 -0.941 34 B_G37:C45_B B 37 ? B 45 ? 19 1 1 B U 38 1_555 B A 42 1_555 4.284 -2.105 0.591 -3.447 9.447 -98.207 35 B_U38:A42_B B 38 ? B 42 ? 24 4 1 B U 39 1_555 B G 13 1_555 0.360 -5.620 0.134 21.208 4.225 -99.580 36 B_U39:G13_B B 39 ? B 13 ? ? 6 1 A G 14 1_555 A C 40 1_555 -0.208 -0.295 0.156 -9.649 -9.147 -0.520 37 A_G14:C40_A A 14 ? A 40 ? 19 1 1 B C 15 1_555 B G 10 1_555 0.106 -0.139 -0.223 6.421 -6.374 0.238 38 B_C15:G10_B B 15 ? B 10 ? 19 1 1 B A 16 1_555 B U 9 1_555 0.124 -0.053 -0.073 3.738 -3.010 0.830 39 B_A16:U9_B B 16 ? B 9 ? 20 1 1 B C 17 1_555 B G 8 1_555 0.274 -0.173 0.017 4.391 -5.362 2.995 40 B_C17:G8_B B 17 ? B 8 ? 19 1 1 B U 18 1_555 B A 32 1_555 -0.182 -0.212 0.466 -1.165 -13.367 2.311 41 B_U18:A32_B B 18 ? B 32 ? 20 1 1 B C 19 1_555 B G 31 1_555 0.197 -0.143 0.163 1.718 -8.685 0.393 42 B_C19:G31_B B 19 ? B 31 ? 19 1 1 B C 20 1_555 B G 30 1_555 0.119 -0.101 0.084 0.694 -2.883 1.460 43 B_C20:G30_B B 20 ? B 30 ? 19 1 1 B U 21 1_555 B A 29 1_555 -0.011 -0.132 -0.017 -1.098 0.766 1.567 44 B_U21:A29_B B 21 ? B 29 ? 20 1 1 B G 14 1_555 B C 40 1_555 -0.108 -0.148 -0.065 -14.266 -5.621 0.330 45 B_G14:C40_B B 14 ? B 40 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 29 1_555 A U 21 1_555 A G 30 1_555 A C 20 1_555 0.023 -1.834 3.267 0.417 1.418 33.366 -3.423 0.028 3.188 2.467 -0.727 33.397 1 AA_A29G30:C20U21_AA A 29 ? A 21 ? A 30 ? A 20 ? 1 A G 30 1_555 A C 20 1_555 A G 31 1_555 A C 19 1_555 0.382 -2.250 3.219 3.335 2.822 30.611 -4.747 -0.097 3.028 5.312 -6.277 30.913 2 AA_G30G31:C19C20_AA A 30 ? A 20 ? A 31 ? A 19 ? 1 A G 31 1_555 A C 19 1_555 A A 32 1_555 A U 18 1_555 0.134 -1.357 3.012 2.248 2.496 33.178 -2.741 0.105 2.908 4.357 -3.925 33.343 3 AA_G31A32:U18C19_AA A 31 ? A 19 ? A 32 ? A 18 ? 1 A A 32 1_555 A U 18 1_555 A G 8 1_555 A C 17 1_555 -0.994 -1.509 3.042 0.719 9.323 44.282 -2.698 1.349 2.672 12.206 -0.941 45.210 4 AA_A32G8:C17U18_AA A 32 ? A 18 ? A 8 ? A 17 ? 1 A G 8 1_555 A C 17 1_555 A U 9 1_555 A A 16 1_555 -0.375 -1.955 3.201 2.277 2.968 34.585 -3.700 0.958 2.998 4.974 -3.816 34.780 5 AA_G8U9:A16C17_AA A 8 ? A 17 ? A 9 ? A 16 ? 1 A U 9 1_555 A A 16 1_555 A G 10 1_555 A C 15 1_555 0.364 -1.528 2.938 3.058 15.181 29.193 -4.749 -0.226 1.954 27.791 -5.598 32.967 6 AA_U9G10:C15A16_AA A 9 ? A 16 ? A 10 ? A 15 ? 1 A G 10 1_555 A C 15 1_555 A G 11 1_555 A U 44 1_555 3.038 -1.484 3.036 7.919 -7.169 -5.038 10.102 17.956 -1.639 43.504 48.055 -11.807 7 AA_G10G11:U44C15_AA A 10 ? A 15 ? A 11 ? A 44 ? 1 A G 13 1_555 A U 39 1_555 A A 42 1_555 A U 38 1_555 -1.986 -2.721 -2.843 160.810 -62.725 61.888 -1.882 -0.337 -2.203 -32.014 -82.076 173.663 8 AA_G13A42:U38U39_AA A 13 ? A 39 ? A 42 ? A 38 ? 1 A A 42 1_555 A U 38 1_555 A C 45 1_555 A G 37 1_555 1.796 -1.673 3.091 -8.844 2.137 85.395 -1.273 -1.503 2.897 1.572 6.505 85.786 9 AA_A42C45:G37U38_AA A 42 ? A 38 ? A 45 ? A 37 ? 1 A C 45 1_555 A G 37 1_555 A C 46 1_555 A G 36 1_555 -0.651 -1.896 3.273 -3.517 7.573 37.150 -3.827 0.572 2.892 11.706 5.436 38.044 10 AA_C45C46:G36G37_AA A 45 ? A 37 ? A 46 ? A 36 ? 1 A C 46 1_555 A G 36 1_555 A C 47 1_555 A G 35 1_555 -0.250 -1.903 3.347 -0.393 5.593 28.815 -4.924 0.411 2.937 11.106 0.780 29.344 11 AA_C46C47:G35G36_AA A 46 ? A 36 ? A 47 ? A 35 ? 1 A C 47 1_555 A G 35 1_555 A U 48 1_555 A G 34 1_555 0.083 -1.498 3.317 0.550 4.988 42.452 -2.549 -0.059 3.131 6.860 -0.756 42.734 12 AA_C47U48:G34G35_AA A 47 ? A 35 ? A 48 ? A 34 ? 1 A U 48 1_555 A G 34 1_555 A G 49 1_555 A C 33 1_555 0.565 -2.325 2.984 4.320 10.141 25.021 -6.927 -0.344 1.977 22.088 -9.410 27.306 13 AA_U48G49:C33G34_AA A 48 ? A 34 ? A 49 ? A 33 ? 1 A G 49 1_555 A C 33 1_555 A C 50 1_555 A G 7 1_555 1.278 -1.146 3.297 1.244 8.037 46.261 -2.094 -1.503 3.099 10.137 -1.569 46.932 14 AA_G49C50:G7C33_AA A 49 ? A 33 ? A 50 ? A 7 ? 1 A C 50 1_555 A G 7 1_555 A G 51 1_555 A C 6 1_555 0.587 -1.332 2.981 -1.476 8.498 31.165 -3.682 -1.278 2.511 15.450 2.683 32.308 15 AA_C50G51:C6G7_AA A 50 ? A 7 ? A 51 ? A 6 ? 1 A G 51 1_555 A C 6 1_555 A G 52 1_555 A C 5 1_555 -0.028 -1.728 3.197 0.271 5.930 32.360 -3.996 0.092 2.844 10.529 -0.481 32.886 16 AA_G51G52:C5C6_AA A 51 ? A 6 ? A 52 ? A 5 ? 1 A G 52 1_555 A C 5 1_555 A U 53 1_555 A G 4 1_555 0.159 -1.275 3.190 3.129 2.760 39.610 -2.180 0.116 3.101 4.059 -4.601 39.821 17 AA_G52U53:G4C5_AA A 52 ? A 5 ? A 53 ? A 4 ? 1 A U 53 1_555 A G 4 1_555 A G 54 1_555 A C 3 1_555 -0.414 -1.971 2.913 1.165 18.340 25.478 -6.081 0.921 1.229 36.189 -2.298 31.324 18 AA_U53G54:C3G4_AA A 53 ? A 4 ? A 54 ? A 3 ? 1 A G 54 1_555 A C 3 1_555 A U 55 1_555 A A 2 1_555 -0.094 -1.071 3.380 1.623 6.817 31.667 -3.118 0.454 3.080 12.304 -2.929 32.414 19 AA_G54U55:A2C3_AA A 54 ? A 3 ? A 55 ? A 2 ? 1 A U 55 1_555 A A 2 1_555 A C 56 1_555 A G 1 1_555 0.645 -1.346 3.061 1.276 1.923 35.324 -2.477 -0.887 3.007 3.165 -2.100 35.397 20 AA_U55C56:G1A2_AA A 55 ? A 2 ? A 56 ? A 1 ? 1 A C 56 1_555 A G 1 1_555 B G 1 1_555 B C 56 1_555 -0.010 -3.976 3.196 -0.541 6.800 -16.610 7.955 -0.413 4.455 -22.352 -1.777 -17.948 21 AB_C56G1:C56G1_BA A 56 ? A 1 ? B 1 ? B 56 ? 1 B G 1 1_555 B C 56 1_555 B A 2 1_555 B U 55 1_555 -0.717 -1.440 2.939 -1.405 3.683 34.831 -2.878 1.005 2.802 6.128 2.338 35.046 22 BB_G1A2:U55C56_BB B 1 ? B 56 ? B 2 ? B 55 ? 1 B A 2 1_555 B U 55 1_555 B C 3 1_555 B G 54 1_555 0.086 -1.121 3.416 -0.524 6.563 31.047 -3.270 -0.254 3.118 12.091 0.966 31.721 23 BB_A2C3:G54U55_BB B 2 ? B 55 ? B 3 ? B 54 ? 1 B C 3 1_555 B G 54 1_555 B G 4 1_555 B U 53 1_555 0.149 -2.164 2.826 -6.079 13.333 25.223 -6.356 -1.231 1.450 27.745 12.650 29.111 24 BB_C3G4:U53G54_BB B 3 ? B 54 ? B 4 ? B 53 ? 1 B G 4 1_555 B U 53 1_555 B C 5 1_555 B G 52 1_555 -0.116 -1.289 3.343 -1.276 4.302 42.348 -2.212 0.031 3.205 5.935 1.761 42.575 25 BB_G4C5:G52U53_BB B 4 ? B 53 ? B 5 ? B 52 ? 1 B C 5 1_555 B G 52 1_555 B C 6 1_555 B G 51 1_555 0.035 -1.860 3.124 0.392 7.803 31.310 -4.582 -0.001 2.597 14.183 -0.713 32.247 26 BB_C5C6:G51G52_BB B 5 ? B 52 ? B 6 ? B 51 ? 1 B C 6 1_555 B G 51 1_555 B G 7 1_555 B C 50 1_555 -0.669 -1.321 2.920 3.039 14.174 31.531 -3.972 1.500 2.082 24.527 -5.259 34.626 27 BB_C6G7:C50G51_BB B 6 ? B 51 ? B 7 ? B 50 ? 1 B G 7 1_555 B C 50 1_555 B C 33 1_555 B G 49 1_555 -1.243 -0.949 3.155 -2.091 3.226 46.447 -1.460 1.402 3.136 4.082 2.647 46.597 28 BB_G7C33:G49C50_BB B 7 ? B 50 ? B 33 ? B 49 ? 1 B C 33 1_555 B G 49 1_555 B G 34 1_555 B U 48 1_555 -0.281 -2.338 3.076 -5.563 12.251 23.104 -7.555 -0.522 1.668 27.771 12.611 26.690 29 BB_C33G34:U48G49_BB B 33 ? B 49 ? B 34 ? B 48 ? 1 B G 34 1_555 B U 48 1_555 B G 35 1_555 B C 47 1_555 -0.261 -1.769 3.289 -1.581 5.107 40.522 -3.080 0.204 3.061 7.335 2.271 40.858 30 BB_G34G35:C47U48_BB B 34 ? B 48 ? B 35 ? B 47 ? 1 B G 35 1_555 B C 47 1_555 B G 36 1_555 B C 46 1_555 0.593 -2.013 3.245 3.889 6.776 29.305 -5.130 -0.401 2.775 13.102 -7.521 30.306 31 BB_G35G36:C46C47_BB B 35 ? B 47 ? B 36 ? B 46 ? 1 B G 36 1_555 B C 46 1_555 B G 37 1_555 B C 45 1_555 0.629 -1.925 3.295 3.370 4.284 36.621 -3.599 -0.546 3.102 6.772 -5.327 37.011 32 BB_G36G37:C45C46_BB B 36 ? B 46 ? B 37 ? B 45 ? 1 B G 37 1_555 B C 45 1_555 B U 38 1_555 B A 42 1_555 -2.185 -1.985 3.092 3.146 1.330 85.761 -1.486 1.671 3.001 0.977 -2.311 85.816 33 BB_G37U38:A42C45_BB B 37 ? B 45 ? B 38 ? B 42 ? 1 B U 38 1_555 B A 42 1_555 B U 39 1_555 B G 13 1_555 1.924 -1.828 3.101 7.052 -0.059 44.036 -2.405 -1.893 3.358 -0.078 -9.333 44.570 34 BB_U38U39:G13A42_BB B 38 ? B 42 ? B 39 ? B 13 ? 1 B C 15 1_555 B G 10 1_555 B A 16 1_555 B U 9 1_555 -0.413 -1.455 3.181 -2.613 15.662 28.438 -4.991 0.340 2.139 29.183 4.869 32.491 35 BB_C15A16:U9G10_BB B 15 ? B 10 ? B 16 ? B 9 ? 1 B A 16 1_555 B U 9 1_555 B C 17 1_555 B G 8 1_555 0.441 -1.964 3.150 -2.493 2.411 34.139 -3.683 -1.115 2.970 4.094 4.233 34.309 36 BB_A16C17:G8U9_BB B 16 ? B 9 ? B 17 ? B 8 ? 1 B C 17 1_555 B G 8 1_555 B U 18 1_555 B A 32 1_555 0.929 -1.684 2.975 -2.817 11.794 44.193 -3.028 -1.401 2.413 15.336 3.663 45.746 37 BB_C17U18:A32G8_BB B 17 ? B 8 ? B 18 ? B 32 ? 1 B U 18 1_555 B A 32 1_555 B C 19 1_555 B G 31 1_555 -0.164 -1.285 3.171 -1.364 1.210 33.784 -2.396 0.070 3.129 2.081 2.345 33.832 38 BB_U18C19:G31A32_BB B 18 ? B 32 ? B 19 ? B 31 ? 1 B C 19 1_555 B G 31 1_555 B C 20 1_555 B G 30 1_555 -0.385 -2.252 3.154 -4.032 4.053 30.512 -4.932 0.000 2.865 7.617 7.579 31.030 39 BB_C19C20:G30G31_BB B 19 ? B 31 ? B 20 ? B 30 ? 1 B C 20 1_555 B G 30 1_555 B U 21 1_555 B A 29 1_555 -0.048 -1.935 3.235 -1.946 3.630 32.941 -3.971 -0.229 3.008 6.370 3.416 33.191 40 BB_C20U21:A29G30_BB B 20 ? B 30 ? B 21 ? B 29 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8K0Y _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.006275 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003416 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034188 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011608 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? IR ? ? 60.53913 16.16152 ? ? 1.10831 19.94994 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_