HEADER TRANSFERASE 10-JUL-23 8K1F TITLE CRYSTAL STRUCTURE OF TRMR FROM FUSOBACTERIUM NUCLEATUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA 5-HYDROXYURIDINE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HO5U METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM ATCC SOURCE 3 25586; SOURCE 4 ORGANISM_TAXID: 190304; SOURCE 5 GENE: TRMR, FN0314; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS TRNA 5-HYDROXYURIDINE METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.R.HE,X.BAI,J.ZHANG,Z.D.ZHAO REVDAT 1 02-AUG-23 8K1F 0 JRNL AUTH S.R.HE,X.BAI JRNL TITL CRYSTAL STRUCTURE OF TRMR FROM FUSOBACTERIUM NUCLEATUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 3 NUMBER OF REFLECTIONS : 21154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.450 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0970 - 5.7779 0.99 1746 182 0.2175 0.2930 REMARK 3 2 5.7779 - 4.5891 0.99 1706 178 0.1882 0.2717 REMARK 3 3 4.5891 - 4.0098 0.99 1688 177 0.1661 0.2245 REMARK 3 4 4.0098 - 3.6436 0.99 1663 174 0.1845 0.2567 REMARK 3 5 3.6436 - 3.3826 0.99 1676 174 0.1979 0.2902 REMARK 3 6 3.3826 - 3.1833 0.97 1624 170 0.2211 0.3175 REMARK 3 7 3.1833 - 3.0240 0.97 1654 173 0.2430 0.3582 REMARK 3 8 3.0240 - 2.8924 0.96 1606 168 0.2638 0.3311 REMARK 3 9 2.8924 - 2.7811 0.92 1550 161 0.2706 0.3370 REMARK 3 10 2.7811 - 2.6852 0.77 1304 137 0.2615 0.3312 REMARK 3 11 2.6852 - 2.6012 0.64 1058 109 0.2612 0.2993 REMARK 3 12 2.6012 - 2.5269 0.48 808 86 0.2565 0.3203 REMARK 3 13 2.5269 - 2.4604 0.37 610 63 0.2454 0.3601 REMARK 3 14 2.4604 - 2.4004 0.27 461 48 0.2485 0.4127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4432 REMARK 3 ANGLE : 0.947 5993 REMARK 3 CHIRALITY : 0.054 702 REMARK 3 PLANARITY : 0.005 764 REMARK 3 DIHEDRAL : 3.367 2622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8K1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110870 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.05300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 9% PEG 8000, 95MM CALCIUM REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.64050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.64050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.99066 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -23.29450 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 86.39482 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 ASN A 23 REMARK 465 LEU A 24 REMARK 465 GLU A 35 REMARK 465 ILE A 36 REMARK 465 ASN A 37 REMARK 465 ASN A 38 REMARK 465 PHE A 167 REMARK 465 ARG A 168 REMARK 465 GLY A 169 REMARK 465 TYR A 170 REMARK 465 LEU A 171 REMARK 465 TYR A 172 REMARK 465 LYS A 173 REMARK 465 GLU A 174 REMARK 465 SER A 175 REMARK 465 PRO A 176 REMARK 465 LYS A 177 REMARK 465 PHE A 215 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 25 REMARK 465 LEU B 26 REMARK 465 ILE B 27 REMARK 465 LYS B 28 REMARK 465 GLU B 29 REMARK 465 ILE B 30 REMARK 465 GLU B 31 REMARK 465 LYS B 32 REMARK 465 ASP B 33 REMARK 465 ALA B 34 REMARK 465 GLU B 35 REMARK 465 ILE B 36 REMARK 465 ASN B 37 REMARK 465 ASN B 38 REMARK 465 VAL B 39 REMARK 465 PRO B 40 REMARK 465 GLY B 67 REMARK 465 GLY B 83 REMARK 465 ARG B 84 REMARK 465 ASN B 85 REMARK 465 GLY B 86 REMARK 465 PHE B 215 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 GLU C 3 REMARK 465 GLU C 4 REMARK 465 LEU C 5 REMARK 465 LYS C 6 REMARK 465 GLU C 7 REMARK 465 ALA C 8 REMARK 465 LYS C 32 REMARK 465 ASP C 33 REMARK 465 ALA C 34 REMARK 465 GLU C 35 REMARK 465 ILE C 36 REMARK 465 ASN C 37 REMARK 465 ASN C 38 REMARK 465 VAL C 39 REMARK 465 PHE C 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 13 OG REMARK 470 SER A 14 OG REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 ILE A 30 CG1 CG2 CD1 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 PRO A 40 CG CD REMARK 470 ILE A 41 CG1 CG2 CD1 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ILE A 93 CG1 CG2 CD1 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASN A 109 CG OD1 ND2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 ILE A 182 CG1 CG2 CD1 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 LEU B 5 CG CD1 CD2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 ASN B 9 CG OD1 ND2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 SER B 14 OG REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ASP B 17 CG OD1 OD2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ILE B 41 CG1 CG2 CD1 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 ILE B 60 CG1 CG2 CD1 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 THR B 87 OG1 CG2 REMARK 470 ASP B 94 CG OD1 OD2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 ASP B 96 CG OD1 OD2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ILE B 100 CG1 CG2 CD1 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ASN B 109 CG OD1 ND2 REMARK 470 LEU B 110 CG CD1 CD2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ILE B 113 CG1 CG2 CD1 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 TYR B 170 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 LYS C 18 CG CD CE NZ REMARK 470 GLU C 25 CG CD OE1 OE2 REMARK 470 LYS C 28 CG CD CE NZ REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 ASN C 59 CG OD1 ND2 REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 GLU C 106 CG CD OE1 OE2 REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 LYS C 111 CG CD CE NZ REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 ASN C 128 CG OD1 ND2 REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS C 173 CG CD CE NZ REMARK 470 LYS C 177 CG CD CE NZ REMARK 470 LYS C 180 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL C 200 C LEU C 201 N 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 19 -71.26 -116.86 REMARK 500 ALA A 69 -112.99 56.00 REMARK 500 ASN A 196 -5.97 -140.25 REMARK 500 PRO A 203 46.96 -81.96 REMARK 500 SER A 205 -109.48 48.79 REMARK 500 LYS B 20 51.78 -113.94 REMARK 500 ALA B 69 -111.86 53.42 REMARK 500 ASN B 109 27.70 43.02 REMARK 500 PHE B 167 76.30 19.48 REMARK 500 SER B 205 -81.52 -114.57 REMARK 500 GLU C 25 -48.41 68.18 REMARK 500 SER C 43 155.99 -49.95 REMARK 500 ALA C 69 -128.88 54.20 REMARK 500 ASN C 128 31.28 -86.80 REMARK 500 SER C 175 95.39 -161.40 REMARK 500 SER C 205 -117.78 47.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 8K1F A 1 215 UNP Q8RGI1 Q8RGI1_FUSNN 1 215 DBREF 8K1F B 1 215 UNP Q8RGI1 Q8RGI1_FUSNN 1 215 DBREF 8K1F C 1 215 UNP Q8RGI1 Q8RGI1_FUSNN 1 215 SEQRES 1 A 215 MET LEU GLU GLU LEU LYS GLU ALA ASN GLU TYR ILE SER SEQRES 2 A 215 SER LYS ILE ASP LYS TYR LYS SER PRO ASN LEU GLU LEU SEQRES 3 A 215 ILE LYS GLU ILE GLU LYS ASP ALA GLU ILE ASN ASN VAL SEQRES 4 A 215 PRO ILE ILE SER LYS GLU ILE ARG GLU TYR LEU LYS PHE SEQRES 5 A 215 ILE ILE ARG THR ASN LYS ASN ILE LYS ASN ILE LEU GLU SEQRES 6 A 215 ILE GLY THR ALA THR GLY TYR SER GLY ILE ILE MET SER SEQRES 7 A 215 GLU GLU ILE GLN GLY ARG ASN GLY THR LEU THR THR ILE SEQRES 8 A 215 GLU ILE ASP GLU ASP ARG PHE LYS ILE ALA GLN SER ASN SEQRES 9 A 215 PHE GLU LYS SER ASN LEU LYS GLY ILE GLU GLN ILE LEU SEQRES 10 A 215 GLY ASP ALA THR GLU GLU ILE GLU LYS LEU ASN LYS ASN SEQRES 11 A 215 PHE ASP PHE ILE PHE ILE ASP ALA ALA LYS GLY GLN TYR SEQRES 12 A 215 LYS LYS PHE PHE GLU ASP SER TYR LYS LEU LEU ASN GLU SEQRES 13 A 215 CYS GLY ILE VAL PHE VAL ASP ASN ILE LEU PHE ARG GLY SEQRES 14 A 215 TYR LEU TYR LYS GLU SER PRO LYS ARG PHE LYS THR ILE SEQRES 15 A 215 VAL LYS ARG LEU ASP GLU PHE VAL ASN TYR LEU TYR GLU SEQRES 16 A 215 ASN PHE ASP PHE VAL LEU LEU PRO ILE SER ASP GLY VAL SEQRES 17 A 215 GLY ILE ILE HIS LYS PRO PHE SEQRES 1 B 215 MET LEU GLU GLU LEU LYS GLU ALA ASN GLU TYR ILE SER SEQRES 2 B 215 SER LYS ILE ASP LYS TYR LYS SER PRO ASN LEU GLU LEU SEQRES 3 B 215 ILE LYS GLU ILE GLU LYS ASP ALA GLU ILE ASN ASN VAL SEQRES 4 B 215 PRO ILE ILE SER LYS GLU ILE ARG GLU TYR LEU LYS PHE SEQRES 5 B 215 ILE ILE ARG THR ASN LYS ASN ILE LYS ASN ILE LEU GLU SEQRES 6 B 215 ILE GLY THR ALA THR GLY TYR SER GLY ILE ILE MET SER SEQRES 7 B 215 GLU GLU ILE GLN GLY ARG ASN GLY THR LEU THR THR ILE SEQRES 8 B 215 GLU ILE ASP GLU ASP ARG PHE LYS ILE ALA GLN SER ASN SEQRES 9 B 215 PHE GLU LYS SER ASN LEU LYS GLY ILE GLU GLN ILE LEU SEQRES 10 B 215 GLY ASP ALA THR GLU GLU ILE GLU LYS LEU ASN LYS ASN SEQRES 11 B 215 PHE ASP PHE ILE PHE ILE ASP ALA ALA LYS GLY GLN TYR SEQRES 12 B 215 LYS LYS PHE PHE GLU ASP SER TYR LYS LEU LEU ASN GLU SEQRES 13 B 215 CYS GLY ILE VAL PHE VAL ASP ASN ILE LEU PHE ARG GLY SEQRES 14 B 215 TYR LEU TYR LYS GLU SER PRO LYS ARG PHE LYS THR ILE SEQRES 15 B 215 VAL LYS ARG LEU ASP GLU PHE VAL ASN TYR LEU TYR GLU SEQRES 16 B 215 ASN PHE ASP PHE VAL LEU LEU PRO ILE SER ASP GLY VAL SEQRES 17 B 215 GLY ILE ILE HIS LYS PRO PHE SEQRES 1 C 215 MET LEU GLU GLU LEU LYS GLU ALA ASN GLU TYR ILE SER SEQRES 2 C 215 SER LYS ILE ASP LYS TYR LYS SER PRO ASN LEU GLU LEU SEQRES 3 C 215 ILE LYS GLU ILE GLU LYS ASP ALA GLU ILE ASN ASN VAL SEQRES 4 C 215 PRO ILE ILE SER LYS GLU ILE ARG GLU TYR LEU LYS PHE SEQRES 5 C 215 ILE ILE ARG THR ASN LYS ASN ILE LYS ASN ILE LEU GLU SEQRES 6 C 215 ILE GLY THR ALA THR GLY TYR SER GLY ILE ILE MET SER SEQRES 7 C 215 GLU GLU ILE GLN GLY ARG ASN GLY THR LEU THR THR ILE SEQRES 8 C 215 GLU ILE ASP GLU ASP ARG PHE LYS ILE ALA GLN SER ASN SEQRES 9 C 215 PHE GLU LYS SER ASN LEU LYS GLY ILE GLU GLN ILE LEU SEQRES 10 C 215 GLY ASP ALA THR GLU GLU ILE GLU LYS LEU ASN LYS ASN SEQRES 11 C 215 PHE ASP PHE ILE PHE ILE ASP ALA ALA LYS GLY GLN TYR SEQRES 12 C 215 LYS LYS PHE PHE GLU ASP SER TYR LYS LEU LEU ASN GLU SEQRES 13 C 215 CYS GLY ILE VAL PHE VAL ASP ASN ILE LEU PHE ARG GLY SEQRES 14 C 215 TYR LEU TYR LYS GLU SER PRO LYS ARG PHE LYS THR ILE SEQRES 15 C 215 VAL LYS ARG LEU ASP GLU PHE VAL ASN TYR LEU TYR GLU SEQRES 16 C 215 ASN PHE ASP PHE VAL LEU LEU PRO ILE SER ASP GLY VAL SEQRES 17 C 215 GLY ILE ILE HIS LYS PRO PHE HELIX 1 AA1 TYR A 11 TYR A 19 1 9 HELIX 2 AA2 LEU A 26 ALA A 34 1 9 HELIX 3 AA3 SER A 43 THR A 56 1 14 HELIX 4 AA4 GLY A 71 GLN A 82 1 12 HELIX 5 AA5 ASP A 94 ASN A 109 1 16 HELIX 6 AA6 ASP A 119 LEU A 127 1 9 HELIX 7 AA7 GLN A 142 LYS A 152 1 11 HELIX 8 AA8 PHE A 179 GLU A 195 1 17 HELIX 9 AA9 LYS B 6 LYS B 20 1 15 HELIX 10 AB1 SER B 43 ASN B 57 1 15 HELIX 11 AB2 GLY B 71 GLU B 79 1 9 HELIX 12 AB3 ASP B 94 SER B 108 1 15 HELIX 13 AB4 ASP B 119 ILE B 124 1 6 HELIX 14 AB5 GLN B 142 LYS B 152 1 11 HELIX 15 AB6 LEU B 166 TYR B 170 5 5 HELIX 16 AB7 PRO B 176 ARG B 178 5 3 HELIX 17 AB8 PHE B 179 PHE B 197 1 19 HELIX 18 AB9 GLU C 10 LYS C 20 1 11 HELIX 19 AC1 GLU C 25 GLU C 31 1 7 HELIX 20 AC2 SER C 43 ASN C 57 1 15 HELIX 21 AC3 GLY C 71 GLU C 80 1 10 HELIX 22 AC4 ILE C 81 ASN C 85 5 5 HELIX 23 AC5 ASP C 94 ASN C 109 1 16 HELIX 24 AC6 ASP C 119 ILE C 124 1 6 HELIX 25 AC7 GLU C 125 LEU C 127 5 3 HELIX 26 AC8 GLN C 142 LYS C 152 1 11 HELIX 27 AC9 SER C 175 PHE C 197 1 23 SHEET 1 AA1 7 ILE A 113 LEU A 117 0 SHEET 2 AA1 7 THR A 87 GLU A 92 1 N LEU A 88 O GLU A 114 SHEET 3 AA1 7 ASN A 62 ILE A 66 1 N ILE A 63 O THR A 89 SHEET 4 AA1 7 PHE A 131 ASP A 137 1 O ASP A 132 N ASN A 62 SHEET 5 AA1 7 LEU A 154 ASP A 163 1 O ASN A 155 N PHE A 131 SHEET 6 AA1 7 VAL A 208 HIS A 212 -1 O GLY A 209 N VAL A 162 SHEET 7 AA1 7 ASP A 198 LEU A 202 -1 N LEU A 202 O VAL A 208 SHEET 1 AA2 7 ILE B 113 LEU B 117 0 SHEET 2 AA2 7 LEU B 88 GLU B 92 1 N THR B 90 O ILE B 116 SHEET 3 AA2 7 ILE B 63 GLU B 65 1 N GLU B 65 O THR B 89 SHEET 4 AA2 7 PHE B 131 ASP B 137 1 O PHE B 133 N LEU B 64 SHEET 5 AA2 7 LEU B 154 ASP B 163 1 O ASN B 155 N PHE B 131 SHEET 6 AA2 7 VAL B 208 HIS B 212 -1 O GLY B 209 N VAL B 162 SHEET 7 AA2 7 ASP B 198 LEU B 202 -1 N LEU B 202 O VAL B 208 SHEET 1 AA3 7 ILE C 113 LEU C 117 0 SHEET 2 AA3 7 THR C 87 GLU C 92 1 N LEU C 88 O GLU C 114 SHEET 3 AA3 7 ASN C 62 ILE C 66 1 N ILE C 63 O THR C 89 SHEET 4 AA3 7 PHE C 131 ASP C 137 1 O PHE C 133 N LEU C 64 SHEET 5 AA3 7 LEU C 154 ASP C 163 1 O ASN C 155 N PHE C 131 SHEET 6 AA3 7 VAL C 208 HIS C 212 -1 O GLY C 209 N VAL C 162 SHEET 7 AA3 7 ASP C 198 LEU C 202 -1 N LEU C 202 O VAL C 208 CRYST1 165.281 46.589 87.316 90.00 98.33 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006050 0.000000 0.000886 0.00000 SCALE2 0.000000 0.021464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011575 0.00000