HEADER HYDROLASE 12-JUL-23 8K2G TITLE CRYSTAL STRUCTURE OF GROUP 1 OLIGOSACCHARIDE-RELEASING BETA-N- TITLE 2 ACETYLGALACTOSAMINIDASE NGACA FROM COHNELLA ABIETIS, APO 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOSACCHARIDE-RELEASING BETA-N-ACETYLGALACTOSAMINIDASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COHNELLA ABIETIS; SOURCE 3 ORGANISM_TAXID: 2507935; SOURCE 4 GENE: KCTCHS21_21730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SUMIDA,S.FUSHINOBU REVDAT 2 22-MAY-24 8K2G 1 JRNL REVDAT 1 24-APR-24 8K2G 0 JRNL AUTH T.SUMIDA,S.HIRAOKA,K.USUI,A.ISHIWATA,T.SENGOKU,K.A.STUBBS, JRNL AUTH 2 K.TANAKA,S.DEGUCHI,S.FUSHINOBU,T.NUNOURA JRNL TITL GENETIC AND FUNCTIONAL DIVERSITY OF JRNL TITL 2 BETA-N-ACETYLGALACTOSAMINE-TARGETING GLYCOSIDASES EXPANDED JRNL TITL 3 BY DEEP-SEA METAGENOME ANALYSIS. JRNL REF NAT COMMUN V. 15 3543 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38730244 JRNL DOI 10.1038/S41467-024-47653-2 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 91414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4810 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 390 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 694 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8308 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 7517 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11330 ; 1.660 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17392 ; 0.566 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1012 ; 6.766 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;12.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1328 ;14.666 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1190 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9932 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1897 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4042 ; 1.835 ; 1.652 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4042 ; 1.834 ; 1.652 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5050 ; 2.755 ; 2.964 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5051 ; 2.756 ; 2.966 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4266 ; 2.856 ; 1.914 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4267 ; 2.856 ; 1.915 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6279 ; 4.451 ; 3.367 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9070 ; 5.731 ;17.140 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8962 ; 5.638 ;16.810 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8K2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M BIS-TRIS PH 6.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 151 CG - CD - NE ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG B 500 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 284 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 109 -49.78 -155.54 REMARK 500 ASN B 138 -26.11 74.04 REMARK 500 HIS B 168 49.79 -140.55 REMARK 500 SER B 198 -49.53 -139.67 REMARK 500 LYS B 251 -0.18 74.92 REMARK 500 CYS B 366 -149.08 59.30 REMARK 500 ASP A 109 -56.40 -153.14 REMARK 500 ASN A 138 -21.44 82.77 REMARK 500 CYS A 366 -153.25 57.40 REMARK 500 TYR A 371 -26.97 -140.47 REMARK 500 TRP A 375 77.72 -103.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 136 ASN A 137 -147.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 57 0.20 SIDE CHAIN REMARK 500 ARG B 151 0.19 SIDE CHAIN REMARK 500 ARG B 349 0.08 SIDE CHAIN REMARK 500 ARG A 151 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 425 OE2 REMARK 620 2 HOH B 782 O 89.9 REMARK 620 3 HOH B 814 O 90.9 173.7 REMARK 620 4 HOH B 879 O 88.1 81.3 92.5 REMARK 620 5 HOH A 725 O 88.5 92.6 93.6 173.0 REMARK 620 6 HOH A 975 O 175.4 93.2 85.6 89.1 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 729 O REMARK 620 2 GLU A 425 OE2 85.8 REMARK 620 3 HOH A 784 O 93.5 92.2 REMARK 620 4 HOH A 821 O 96.5 88.9 170.1 REMARK 620 5 HOH A 844 O 171.4 86.2 83.8 86.4 REMARK 620 6 HOH A 989 O 93.9 178.5 89.3 89.8 94.2 REMARK 620 N 1 2 3 4 5 DBREF1 8K2G B 1 513 UNP A0A3T1D3V8_9BACL DBREF2 8K2G B A0A3T1D3V8 1 513 DBREF1 8K2G A 1 513 UNP A0A3T1D3V8_9BACL DBREF2 8K2G A A0A3T1D3V8 1 513 SEQADV 8K2G GLY B -2 UNP A0A3T1D3V EXPRESSION TAG SEQADV 8K2G PRO B -1 UNP A0A3T1D3V EXPRESSION TAG SEQADV 8K2G GLY B 0 UNP A0A3T1D3V EXPRESSION TAG SEQADV 8K2G GLY A -2 UNP A0A3T1D3V EXPRESSION TAG SEQADV 8K2G PRO A -1 UNP A0A3T1D3V EXPRESSION TAG SEQADV 8K2G GLY A 0 UNP A0A3T1D3V EXPRESSION TAG SEQRES 1 B 516 GLY PRO GLY MET ALA ASN THR GLN LYS THR LEU SER LEU SEQRES 2 B 516 SER VAL TRP THR ALA SER SER GLN GLU ARG VAL ARG GLN SEQRES 3 B 516 ASP ASP PRO ALA GLY GLU SER LEU ASN ILE GLU LEU PHE SEQRES 4 B 516 ALA ALA ARG GLY GLU TYR GLU SER PHE GLN VAL ALA LEU SEQRES 5 B 516 LYS ALA PRO GLU GLY GLU HIS ARG ASN VAL HIS PHE VAL SEQRES 6 B 516 VAL SER ASP LEU LYS GLY THR GLY ASP SER PHE ILE SER SEQRES 7 B 516 LYS SER ASN LEU THR LEU TYR ARG GLU HIS TYR VAL TYR SEQRES 8 B 516 ILE SER GLU SER SER PRO GLN ARG GLY THR VAL LEU PRO SEQRES 9 B 516 GLU GLY PRO GLY TRP TYR PRO ASP ALA LEU ILE PRO PHE SEQRES 10 B 516 ILE ASP PRO ALA THR ASN GLU PRO PRO SER GLY GLY GLU SEQRES 11 B 516 LEU ILE ALA VAL PRO PHE ALA LEU GLU ASN ASN SER ASN SEQRES 12 B 516 GLN VAL ILE TRP VAL ASP ILE GLN VAL PRO ARG ASP ALA SEQRES 13 B 516 GLU ALA GLY HIS TYR SER GLY SER TYR ILE VAL SER SER SEQRES 14 B 516 GLU HIS GLY GLU VAL THR GLY GLN ILE SER LEU THR VAL SEQRES 15 B 516 TRP ASN PHE GLU LEU PRO LEU LYS PRO SER LEU LYS SER SEQRES 16 B 516 THR PHE LEU ILE TRP SER SER ARG LYS LYS SER THR VAL SEQRES 17 B 516 GLU GLU LEU LEU LYS HIS LYS LEU MET CYS GLN GLN TRP SEQRES 18 B 516 ASN LEU SER GLU GLU GLU LYS GLY ALA ALA PRO THR SER SEQRES 19 B 516 GLU GLY GLU TRP ILE GLU LYS TYR GLY VAL ASN CYS SER SEQRES 20 B 516 GLY LEU GLY PHE TRP SER LYS ALA ASP THR PHE ASN GLY SEQRES 21 B 516 VAL MET PRO PRO PRO PRO THR VAL GLU GLU ILE GLN ALA SEQRES 22 B 516 ALA ALA SER ALA HIS PRO SER ASN LEU PHE LEU TYR ASN SEQRES 23 B 516 TYR THR ALA ASP GLU ILE GLY HIS TYR THR SER LEU TYR SEQRES 24 B 516 GLU PRO ILE LYS ALA TRP ALA ARG ASN LEU HIS GLU ALA SEQRES 25 B 516 GLY VAL ALA ASN LEU ILE THR MET ALA PRO VAL PRO GLU SEQRES 26 B 516 LEU TYR ASP ASP GLY SER GLY SER GLY ARG SER ALA VAL SEQRES 27 B 516 ASP ILE TRP VAL ILE LEU PRO LEU GLN TYR ASP LYS ASP SEQRES 28 B 516 ARG ILE GLN GLU VAL LEU ALA LYS GLY ASP GLU VAL TRP SEQRES 29 B 516 SER TYR ASN CYS CYS VAL GLN ASP ASP TYR SER PRO LYS SEQRES 30 B 516 TRP GLN ILE ASP PHE ASN PRO ILE GLU TYR ARG ILE GLN SEQRES 31 B 516 PRO GLY PHE ILE ASN GLN SER LEU GLY MET THR GLY ILE SEQRES 32 B 516 LEU TYR TRP ARG VAL ASP PHE TRP THR GLU ASP PRO TRP SEQRES 33 B 516 HIS ASP VAL LEU THR LEU ARG ALA ASP GLY MET GLU PHE SEQRES 34 B 516 ASN GLY GLU GLY MET LEU VAL TYR PRO GLY GLU GLN VAL SEQRES 35 B 516 GLY ILE ASP GLY VAL VAL PRO SER ILE ARG LEU LYS ALA SEQRES 36 B 516 ILE ARG LYS GLY ILE GLU ASP TYR GLU TYR ILE GLU ILE SEQRES 37 B 516 LEU LYS ASN LEU GLY HIS GLU GLN TRP ALA LEU GLU ILE SEQRES 38 B 516 SER GLN SER VAL GLY PRO ASP TRP HIS ASN TRP THR LYS SEQRES 39 B 516 ASP HIS HIS LYS LEU GLU TRP ALA ARG LYS GLN LEU GLY SEQRES 40 B 516 GLU ARG ILE ASN ASP LEU MET THR LYS SEQRES 1 A 516 GLY PRO GLY MET ALA ASN THR GLN LYS THR LEU SER LEU SEQRES 2 A 516 SER VAL TRP THR ALA SER SER GLN GLU ARG VAL ARG GLN SEQRES 3 A 516 ASP ASP PRO ALA GLY GLU SER LEU ASN ILE GLU LEU PHE SEQRES 4 A 516 ALA ALA ARG GLY GLU TYR GLU SER PHE GLN VAL ALA LEU SEQRES 5 A 516 LYS ALA PRO GLU GLY GLU HIS ARG ASN VAL HIS PHE VAL SEQRES 6 A 516 VAL SER ASP LEU LYS GLY THR GLY ASP SER PHE ILE SER SEQRES 7 A 516 LYS SER ASN LEU THR LEU TYR ARG GLU HIS TYR VAL TYR SEQRES 8 A 516 ILE SER GLU SER SER PRO GLN ARG GLY THR VAL LEU PRO SEQRES 9 A 516 GLU GLY PRO GLY TRP TYR PRO ASP ALA LEU ILE PRO PHE SEQRES 10 A 516 ILE ASP PRO ALA THR ASN GLU PRO PRO SER GLY GLY GLU SEQRES 11 A 516 LEU ILE ALA VAL PRO PHE ALA LEU GLU ASN ASN SER ASN SEQRES 12 A 516 GLN VAL ILE TRP VAL ASP ILE GLN VAL PRO ARG ASP ALA SEQRES 13 A 516 GLU ALA GLY HIS TYR SER GLY SER TYR ILE VAL SER SER SEQRES 14 A 516 GLU HIS GLY GLU VAL THR GLY GLN ILE SER LEU THR VAL SEQRES 15 A 516 TRP ASN PHE GLU LEU PRO LEU LYS PRO SER LEU LYS SER SEQRES 16 A 516 THR PHE LEU ILE TRP SER SER ARG LYS LYS SER THR VAL SEQRES 17 A 516 GLU GLU LEU LEU LYS HIS LYS LEU MET CYS GLN GLN TRP SEQRES 18 A 516 ASN LEU SER GLU GLU GLU LYS GLY ALA ALA PRO THR SER SEQRES 19 A 516 GLU GLY GLU TRP ILE GLU LYS TYR GLY VAL ASN CYS SER SEQRES 20 A 516 GLY LEU GLY PHE TRP SER LYS ALA ASP THR PHE ASN GLY SEQRES 21 A 516 VAL MET PRO PRO PRO PRO THR VAL GLU GLU ILE GLN ALA SEQRES 22 A 516 ALA ALA SER ALA HIS PRO SER ASN LEU PHE LEU TYR ASN SEQRES 23 A 516 TYR THR ALA ASP GLU ILE GLY HIS TYR THR SER LEU TYR SEQRES 24 A 516 GLU PRO ILE LYS ALA TRP ALA ARG ASN LEU HIS GLU ALA SEQRES 25 A 516 GLY VAL ALA ASN LEU ILE THR MET ALA PRO VAL PRO GLU SEQRES 26 A 516 LEU TYR ASP ASP GLY SER GLY SER GLY ARG SER ALA VAL SEQRES 27 A 516 ASP ILE TRP VAL ILE LEU PRO LEU GLN TYR ASP LYS ASP SEQRES 28 A 516 ARG ILE GLN GLU VAL LEU ALA LYS GLY ASP GLU VAL TRP SEQRES 29 A 516 SER TYR ASN CYS CYS VAL GLN ASP ASP TYR SER PRO LYS SEQRES 30 A 516 TRP GLN ILE ASP PHE ASN PRO ILE GLU TYR ARG ILE GLN SEQRES 31 A 516 PRO GLY PHE ILE ASN GLN SER LEU GLY MET THR GLY ILE SEQRES 32 A 516 LEU TYR TRP ARG VAL ASP PHE TRP THR GLU ASP PRO TRP SEQRES 33 A 516 HIS ASP VAL LEU THR LEU ARG ALA ASP GLY MET GLU PHE SEQRES 34 A 516 ASN GLY GLU GLY MET LEU VAL TYR PRO GLY GLU GLN VAL SEQRES 35 A 516 GLY ILE ASP GLY VAL VAL PRO SER ILE ARG LEU LYS ALA SEQRES 36 A 516 ILE ARG LYS GLY ILE GLU ASP TYR GLU TYR ILE GLU ILE SEQRES 37 A 516 LEU LYS ASN LEU GLY HIS GLU GLN TRP ALA LEU GLU ILE SEQRES 38 A 516 SER GLN SER VAL GLY PRO ASP TRP HIS ASN TRP THR LYS SEQRES 39 A 516 ASP HIS HIS LYS LEU GLU TRP ALA ARG LYS GLN LEU GLY SEQRES 40 A 516 GLU ARG ILE ASN ASP LEU MET THR LYS HET MG B 601 1 HET MG A 601 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *694(H2 O) HELIX 1 AA1 SER B 75 SER B 77 5 3 HELIX 2 AA2 LYS B 201 HIS B 211 1 11 HELIX 3 AA3 SER B 231 GLY B 240 1 10 HELIX 4 AA4 THR B 264 SER B 273 1 10 HELIX 5 AA5 TYR B 292 SER B 294 5 3 HELIX 6 AA6 LEU B 295 ALA B 309 1 15 HELIX 7 AA7 VAL B 320 TYR B 324 5 5 HELIX 8 AA8 LEU B 341 TYR B 345 5 5 HELIX 9 AA9 ASP B 346 GLY B 357 1 12 HELIX 10 AB1 PRO B 381 GLN B 387 1 7 HELIX 11 AB2 GLY B 389 GLY B 396 1 8 HELIX 12 AB3 GLY B 436 GLY B 440 5 5 HELIX 13 AB4 SER B 447 LEU B 469 1 23 HELIX 14 AB5 HIS B 471 GLY B 483 1 13 HELIX 15 AB6 ASP B 492 MET B 511 1 20 HELIX 16 AB7 SER A 75 SER A 77 5 3 HELIX 17 AB8 LYS A 201 HIS A 211 1 11 HELIX 18 AB9 SER A 221 LYS A 225 5 5 HELIX 19 AC1 SER A 231 GLY A 240 1 10 HELIX 20 AC2 THR A 264 ALA A 274 1 11 HELIX 21 AC3 TYR A 292 SER A 294 5 3 HELIX 22 AC4 LEU A 295 ALA A 309 1 15 HELIX 23 AC5 VAL A 320 TYR A 324 5 5 HELIX 24 AC6 LEU A 341 TYR A 345 5 5 HELIX 25 AC7 ASP A 346 GLY A 357 1 12 HELIX 26 AC8 PRO A 381 GLN A 387 1 7 HELIX 27 AC9 GLY A 389 GLY A 396 1 8 HELIX 28 AD1 GLY A 436 GLY A 440 5 5 HELIX 29 AD2 SER A 447 LEU A 469 1 23 HELIX 30 AD3 HIS A 471 GLY A 483 1 13 HELIX 31 AD4 ASP A 492 LYS A 513 1 22 SHEET 1 AA1 5 SER B 11 SER B 16 0 SHEET 2 AA1 5 TYR B 42 LYS B 50 -1 O ALA B 48 N TRP B 13 SHEET 3 AA1 5 GLN B 141 GLN B 148 -1 O VAL B 145 N PHE B 45 SHEET 4 AA1 5 LEU B 79 ILE B 89 -1 N GLU B 84 O VAL B 142 SHEET 5 AA1 5 GLY B 105 PRO B 113 -1 O ALA B 110 N HIS B 85 SHEET 1 AA2 5 ILE B 33 ARG B 39 0 SHEET 2 AA2 5 GLY B 169 GLU B 183 1 O TRP B 180 N ALA B 37 SHEET 3 AA2 5 GLY B 156 SER B 166 -1 N GLY B 156 O VAL B 179 SHEET 4 AA2 5 LEU B 66 GLY B 68 -1 N LYS B 67 O SER B 159 SHEET 5 AA2 5 PHE B 73 ILE B 74 -1 O ILE B 74 N LEU B 66 SHEET 1 AA3 5 ILE B 33 ARG B 39 0 SHEET 2 AA3 5 GLY B 169 GLU B 183 1 O TRP B 180 N ALA B 37 SHEET 3 AA3 5 GLY B 156 SER B 166 -1 N GLY B 156 O VAL B 179 SHEET 4 AA3 5 HIS B 56 VAL B 63 -1 N HIS B 60 O SER B 165 SHEET 5 AA3 5 PHE B 133 LEU B 135 -1 O LEU B 135 N HIS B 56 SHEET 1 AA4 8 CYS B 215 GLN B 217 0 SHEET 2 AA4 8 LYS B 191 ILE B 196 1 N ILE B 196 O GLN B 216 SHEET 3 AA4 8 GLY B 399 TYR B 402 1 O TYR B 402 N THR B 193 SHEET 4 AA4 8 GLU B 359 TYR B 363 1 N SER B 362 O GLY B 399 SHEET 5 AA4 8 ILE B 337 ILE B 340 1 N ILE B 340 O TRP B 361 SHEET 6 AA4 8 ALA B 312 THR B 316 1 N ILE B 315 O VAL B 339 SHEET 7 AA4 8 LEU B 281 ASP B 287 1 N ASN B 283 O LEU B 314 SHEET 8 AA4 8 SER B 244 GLY B 245 1 N SER B 244 O TYR B 282 SHEET 1 AA5 2 LEU B 417 ALA B 421 0 SHEET 2 AA5 2 MET B 424 ASN B 427 -1 O MET B 424 N ALA B 421 SHEET 1 AA6 2 VAL B 433 TYR B 434 0 SHEET 2 AA6 2 VAL B 445 PRO B 446 -1 O VAL B 445 N TYR B 434 SHEET 1 AA7 5 SER A 11 SER A 16 0 SHEET 2 AA7 5 TYR A 42 LYS A 50 -1 O ALA A 48 N TRP A 13 SHEET 3 AA7 5 GLN A 141 GLN A 148 -1 O VAL A 145 N PHE A 45 SHEET 4 AA7 5 LEU A 79 ILE A 89 -1 N GLU A 84 O VAL A 142 SHEET 5 AA7 5 GLY A 105 PRO A 113 -1 O ILE A 112 N ARG A 83 SHEET 1 AA8 5 ILE A 33 ARG A 39 0 SHEET 2 AA8 5 GLY A 169 GLU A 183 1 O SER A 176 N LEU A 35 SHEET 3 AA8 5 GLY A 156 SER A 166 -1 N GLY A 160 O ILE A 175 SHEET 4 AA8 5 HIS A 56 VAL A 63 -1 N HIS A 60 O SER A 165 SHEET 5 AA8 5 PHE A 133 LEU A 135 -1 O PHE A 133 N VAL A 59 SHEET 1 AA9 2 LEU A 66 LYS A 67 0 SHEET 2 AA9 2 PHE A 73 ILE A 74 -1 O ILE A 74 N LEU A 66 SHEET 1 AB1 8 CYS A 215 GLN A 217 0 SHEET 2 AB1 8 LYS A 191 ILE A 196 1 N ILE A 196 O GLN A 216 SHEET 3 AB1 8 GLY A 399 TYR A 402 1 O TYR A 402 N THR A 193 SHEET 4 AB1 8 GLU A 359 TYR A 363 1 N SER A 362 O GLY A 399 SHEET 5 AB1 8 ILE A 337 ILE A 340 1 N ILE A 340 O TRP A 361 SHEET 6 AB1 8 ALA A 312 THR A 316 1 N ILE A 315 O VAL A 339 SHEET 7 AB1 8 LEU A 281 ASP A 287 1 N ASN A 283 O LEU A 314 SHEET 8 AB1 8 SER A 244 GLY A 245 1 N SER A 244 O TYR A 282 SHEET 1 AB2 2 LEU A 417 ALA A 421 0 SHEET 2 AB2 2 MET A 424 ASN A 427 -1 O PHE A 426 N LEU A 419 SHEET 1 AB3 2 VAL A 433 TYR A 434 0 SHEET 2 AB3 2 VAL A 445 PRO A 446 -1 O VAL A 445 N TYR A 434 LINK OE2 GLU B 425 MG MG B 601 1555 1555 2.05 LINK MG MG B 601 O HOH B 782 1555 1555 2.12 LINK MG MG B 601 O HOH B 814 1555 1555 2.23 LINK MG MG B 601 O HOH B 879 1555 1555 2.21 LINK MG MG B 601 O HOH A 725 1555 1645 2.07 LINK MG MG B 601 O HOH A 975 1555 1645 2.08 LINK O HOH B 729 MG MG A 601 1455 1555 2.06 LINK OE2 GLU A 425 MG MG A 601 1555 1555 1.96 LINK MG MG A 601 O HOH A 784 1555 1555 2.14 LINK MG MG A 601 O HOH A 821 1555 1555 2.13 LINK MG MG A 601 O HOH A 844 1555 1555 2.18 LINK MG MG A 601 O HOH A 989 1555 1555 2.05 CISPEP 1 VAL B 131 PRO B 132 0 -8.82 CISPEP 2 VAL A 131 PRO A 132 0 -7.88 CRYST1 53.214 69.679 71.113 88.41 74.33 87.93 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018792 -0.000681 -0.005260 0.00000 SCALE2 0.000000 0.014361 -0.000267 0.00000 SCALE3 0.000000 0.000000 0.014608 0.00000