HEADER HYDROLASE 12-JUL-23 8K2L TITLE CRYSTAL STRUCTURE OF GROUP 4 MONOSACCHARIDE-RELEASING BETA-N- TITLE 2 ACETYLGALACTOSAMINIDASE NGAP2 FROM PAENIBACILLUS SP. TS12, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOSACCHARIDE-RELEASING BETA-N-ACETYLGALACTOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS SP. TS12; SOURCE 3 ORGANISM_TAXID: 192895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SUMIDA,S.FUSHINOBU REVDAT 1 24-APR-24 8K2L 0 JRNL AUTH T.SUMIDA,S.HIRAOKA,K.USUI,A.ISHIWATA,T.SENGOKU,K.A.STUBBS, JRNL AUTH 2 K.TANAKA,S.DEGUCHI,S.FUSHINOBU,T.NUNOURA JRNL TITL GENETIC AND FUNCTIONAL DIVERSITY OF JRNL TITL 2 BETA-N-ACETYLGALACTOSAMINE RESIDUE-TARGETING GLYCOSIDASES JRNL TITL 3 EXPANDED BY DEEP-SEA METAGENOME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2287 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1440 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4670 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4145 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6352 ; 1.851 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9673 ; 0.661 ; 1.562 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 7.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 24 ;10.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;14.064 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 670 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5310 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 990 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2235 ; 2.331 ; 1.936 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2235 ; 2.330 ; 1.936 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2792 ; 3.049 ; 2.887 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2793 ; 3.048 ; 2.889 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2435 ; 4.095 ; 2.339 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2436 ; 4.094 ; 2.340 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3561 ; 5.926 ; 3.330 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5092 ; 7.006 ;25.444 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5033 ; 6.975 ;25.010 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8K2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300038889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM BROMIDE, 0.1 M BIS-TRIS REMARK 280 PH 7.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.55800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.18750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.55800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.18750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 LEU A 1 REMARK 465 ILE A 2 REMARK 465 ARG A 3 REMARK 465 TRP A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 11 REMARK 465 ASP A 12 REMARK 465 THR A 13 REMARK 465 ILE A 14 REMARK 465 MET A 15 REMARK 465 LEU A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 577 REMARK 465 ARG A 578 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 411 CD GLU A 411 OE1 0.109 REMARK 500 GLU A 540 CD GLU A 540 OE2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 446 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 532 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 563 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 94 77.35 -118.66 REMARK 500 ASP A 114 -72.31 -154.68 REMARK 500 PHE A 183 49.97 -87.05 REMARK 500 VAL A 357 -69.34 -93.84 REMARK 500 SER A 358 138.80 -175.87 REMARK 500 GLN A 401 -75.14 -83.55 REMARK 500 HIS A 432 -45.51 76.11 REMARK 500 ASN A 466 44.81 -148.33 REMARK 500 ASP A 486 60.58 66.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 25 0.08 SIDE CHAIN REMARK 500 ARG A 273 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8K2L A -2 578 PDB 8K2L 8K2L -2 578 SEQRES 1 A 581 GLY PRO GLY LEU ILE ARG TRP SER GLN VAL ASP GLU GLU SEQRES 2 A 581 GLY ASP THR ILE MET LEU GLU GLU LEU PRO ASP PHE GLU SEQRES 3 A 581 THR ARG CYS LEU SER SER LEU SER LYS VAL PHE ALA ASP SEQRES 4 A 581 ALA GLU LEU HIS ASP LEU PRO VAL ASN THR GLY SER ALA SEQRES 5 A 581 MET TRP LYS GLU VAL PHE SER PHE GLN VAL ALA TYR ARG SEQRES 6 A 581 SER PRO GLN LEU ILE LYS SER LEU LYS ILE SER ALA GLU SEQRES 7 A 581 SER GLU LEU GLU PRO TYR LEU ALA ILE ARG ALA VAL GLY SEQRES 8 A 581 LEU SER PRO SER GLU LEU PRO VAL PHE PRO ASN PRO ASP SEQRES 9 A 581 GLU GLY TYR ILE ARG THR ALA PRO GLY LEU TYR PRO ASP SEQRES 10 A 581 PRO LEU TYR PRO LEU ALA ASP GLY VAL HIS ALA VAL PRO SEQRES 11 A 581 ASN GLN TRP ARG SER VAL TRP VAL THR VAL SER LEU PRO SEQRES 12 A 581 SER MET SER GLU PHE ILE PRO ALA ALA ASP ILE GLY ALA SEQRES 13 A 581 GLU SER VAL SER PHE PRO ILE ASP LEU CYS PHE GLU ASP SEQRES 14 A 581 GLY LYS GLY ASN HIS LEU GLY ALA GLU LYS PHE ALA LEU SEQRES 15 A 581 GLU ILE ILE PHE GLN GLU LEU PRO GLU GLN THR LEU LEU SEQRES 16 A 581 HIS THR GLU TRP PHE HIS SER ASP CYS ILE ALA THR GLN SEQRES 17 A 581 TYR LYS VAL GLU VAL PHE SER GLU ALA HIS TRP LYS LEU SEQRES 18 A 581 ILE GLU SER TYR VAL HIS ASN ALA VAL ASN HIS GLY VAL SEQRES 19 A 581 ASN MET LEU LEU THR PRO LEU PHE THR PRO PRO LEU ASP SEQRES 20 A 581 THR TYR VAL GLY GLY GLU ARG PRO THR VAL GLN LEU ILE SEQRES 21 A 581 ASP VAL GLU ILE THR GLY VAL ASN GLU TYR ARG PHE LYS SEQRES 22 A 581 PHE ASP ARG LEU GLU ARG TRP VAL GLU MET CYS GLN ARG SEQRES 23 A 581 LEU GLY ILE GLN PHE ILE GLU PHE SER HIS LEU PHE THR SEQRES 24 A 581 GLN TRP GLY ALA LYS TYR ALA PRO LYS ILE ILE ALA LYS SEQRES 25 A 581 LYS ASP GLY GLU GLU LYS ARG ILE PHE GLY TRP ASP THR SEQRES 26 A 581 GLU ALA SER GLY GLU SER TYR SER LEU PHE LEU ASP GLN SEQRES 27 A 581 PHE LEU PRO GLN LEU VAL HIS PHE ILE ARG ASN HIS HIS SEQRES 28 A 581 LEU ASP ASP LYS VAL PHE PHE HIS VAL SER ASP GLU PRO SEQRES 29 A 581 GLY MET LYS HIS ALA GLU SER TYR ARG GLN ALA SER ASP SEQRES 30 A 581 ILE LEU ASN LYS HIS LEU ALA GLY PHE SER ILE LEU ASP SEQRES 31 A 581 ALA LEU SER ASP TYR ASP PHE TYR GLU LYS GLY LEU VAL SEQRES 32 A 581 GLN ILE PRO VAL PRO SER ASN ASP GLN ILE GLU PRO PHE SEQRES 33 A 581 ILE GLU HIS GLY VAL GLU PRO LEU TRP THR TYR TYR CYS SEQRES 34 A 581 CYS GLY GLN ASP HIS HIS VAL SER ASN ARG PHE PHE SER SEQRES 35 A 581 LEU SER SER PRO ARG ASN ARG VAL LEU GLY ALA GLN LEU SEQRES 36 A 581 TYR LYS PHE GLY VAL GLN GLY PHE LEU HIS TRP GLY PHE SEQRES 37 A 581 ASN PHE TRP TYR SER GLN TYR SER LYS LYS VAL ILE ASP SEQRES 38 A 581 PRO PHE LYS VAL THR ASP ALA ASP CYS ALA PHE PRO SER SEQRES 39 A 581 GLY ASP PRO PHE VAL VAL TYR PRO GLY ALA ASP GLY PRO SEQRES 40 A 581 LEU ASP SER ILE ARG TRP GLU VAL PHE ARG GLU GLY LEU SEQRES 41 A 581 GLN ASP LEU ARG ALA LEU LYS LEU LEU GLU ALA LEU ALA SEQRES 42 A 581 GLY ARG GLU LYS THR LEU ALA LEU LEU GLU GLN ASN LEU SEQRES 43 A 581 ARG GLU GLU LEU THR PHE LYS SER PHE PRO ASP ASP ILE SEQRES 44 A 581 GLU TRP LEU LEU SER THR ARG GLU LYS ILE ASN ARG ALA SEQRES 45 A 581 ILE LYS ASP ALA TYR ARG ALA ASP ARG HET BR A 601 1 HETNAM BR BROMIDE ION FORMUL 2 BR BR 1- FORMUL 3 HOH *368(H2 O) HELIX 1 AA1 LEU A 78 PRO A 80 5 3 HELIX 2 AA2 ALA A 120 GLY A 122 5 3 HELIX 3 AA3 SER A 141 PHE A 145 5 5 HELIX 4 AA4 HIS A 198 LYS A 207 1 10 HELIX 5 AA5 SER A 212 HIS A 229 1 18 HELIX 6 AA6 PHE A 271 GLY A 285 1 15 HELIX 7 AA7 GLY A 326 HIS A 347 1 22 HELIX 8 AA8 GLY A 362 LYS A 364 5 3 HELIX 9 AA9 HIS A 365 LEU A 380 1 16 HELIX 10 AB1 ASP A 391 LYS A 397 1 7 HELIX 11 AB2 ILE A 410 HIS A 416 1 7 HELIX 12 AB3 SER A 441 VAL A 447 1 7 HELIX 13 AB4 VAL A 447 PHE A 455 1 9 HELIX 14 AB5 SER A 470 LYS A 474 5 5 HELIX 15 AB6 SER A 507 GLY A 531 1 25 HELIX 16 AB7 GLY A 531 GLN A 541 1 11 HELIX 17 AB8 ASP A 555 ALA A 573 1 19 SHEET 1 AA1 5 GLU A 23 SER A 28 0 SHEET 2 AA1 5 VAL A 54 ARG A 62 -1 O GLN A 58 N LEU A 27 SHEET 3 AA1 5 ARG A 131 SER A 138 -1 O VAL A 135 N PHE A 57 SHEET 4 AA1 5 LEU A 82 SER A 92 -1 N ARG A 85 O TRP A 134 SHEET 5 AA1 5 GLY A 110 PRO A 118 -1 O TYR A 112 N SER A 90 SHEET 1 AA2 4 THR A 46 TRP A 51 0 SHEET 2 AA2 4 HIS A 171 GLU A 185 1 O ILE A 182 N ALA A 49 SHEET 3 AA2 4 SER A 155 GLU A 165 -1 N PHE A 164 O LEU A 172 SHEET 4 AA2 4 LYS A 71 GLU A 75 -1 N SER A 73 O CYS A 163 SHEET 1 AA3 3 LEU A 192 GLU A 195 0 SHEET 2 AA3 3 GLY A 459 HIS A 462 1 O PHE A 460 N LEU A 192 SHEET 3 AA3 3 TRP A 422 TYR A 424 1 N THR A 423 O LEU A 461 SHEET 1 AA4 5 MET A 233 THR A 236 0 SHEET 2 AA4 5 PHE A 288 PHE A 291 1 O GLU A 290 N THR A 236 SHEET 3 AA4 5 VAL A 353 HIS A 356 1 O PHE A 354 N PHE A 291 SHEET 4 AA4 5 SER A 384 ALA A 388 1 O LEU A 386 N PHE A 355 SHEET 5 AA4 5 ILE A 402 VAL A 404 1 O ILE A 402 N ASP A 387 SHEET 1 AA5 2 ASP A 258 GLY A 263 0 SHEET 2 AA5 2 GLU A 266 LYS A 270 -1 O ARG A 268 N GLU A 260 SHEET 1 AA6 2 ILE A 306 LYS A 310 0 SHEET 2 AA6 2 GLU A 313 PHE A 318 -1 O LYS A 315 N ALA A 308 SHEET 1 AA7 2 VAL A 497 PRO A 499 0 SHEET 2 AA7 2 PRO A 504 ASP A 506 -1 O LEU A 505 N TYR A 498 CISPEP 1 GLU A 419 PRO A 420 0 -4.69 CRYST1 119.116 60.375 100.285 90.00 120.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008395 0.000000 0.004862 0.00000 SCALE2 0.000000 0.016563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011523 0.00000