data_8K30 # _entry.id 8K30 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8K30 pdb_00008k30 10.2210/pdb8k30/pdb WWPDB D_1300039405 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-01-15 ? 2 'Structure model' 1 1 2025-07-30 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8K30 _pdbx_database_status.recvd_initial_deposition_date 2023-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, Y.' 1 ? 'Deng, J.' 2 ? 'Lin, X.' 3 ? 'Huang, L.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Discov' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2056-5968 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 128 _citation.page_last 128 _citation.title 'Structural basis for tRNA mimicry by mascRNA and menRNA.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41421-024-00761-1 _citation.pdbx_database_id_PubMed 39743619 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, Y.' 1 0009-0001-6301-881X primary 'Deng, J.' 2 ? primary 'Lin, X.' 3 ? primary 'Lu, Z.' 4 ? primary 'Wang, L.' 5 ? primary 'Xu, L.' 6 ? primary 'Zhang, Y.' 7 ? primary 'Wang, J.' 8 ? primary 'Huang, L.' 9 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (56-MER)' 18004.605 2 ? U23G ? ? 2 non-polymer syn 'SODIUM ION' 22.990 11 ? ? ? ? 3 non-polymer syn 'STRONTIUM ION' 87.620 2 ? ? ? ? 4 water nat water 18.015 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GACGCCGGUGGUGGCACUCCUGGUUUUCAGGACGGGGUUCAAUUCCCUGCGGUGUC _entity_poly.pdbx_seq_one_letter_code_can GACGCCGGUGGUGGCACUCCUGGUUUUCAGGACGGGGUUCAAUUCCCUGCGGUGUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'STRONTIUM ION' SR 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 G n 1 5 C n 1 6 C n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 G n 1 15 C n 1 16 A n 1 17 C n 1 18 U n 1 19 C n 1 20 C n 1 21 U n 1 22 G n 1 23 G n 1 24 U n 1 25 U n 1 26 U n 1 27 U n 1 28 C n 1 29 A n 1 30 G n 1 31 G n 1 32 A n 1 33 C n 1 34 G n 1 35 G n 1 36 G n 1 37 G n 1 38 U n 1 39 U n 1 40 C n 1 41 A n 1 42 A n 1 43 U n 1 44 U n 1 45 C n 1 46 C n 1 47 C n 1 48 U n 1 49 G n 1 50 C n 1 51 G n 1 52 G n 1 53 U n 1 54 G n 1 55 U n 1 56 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 56 _pdbx_entity_src_syn.organism_scientific 'Oryzias latipes' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 8090 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 ? ? ? A . n A 1 25 U 25 25 ? ? ? A . n A 1 26 U 26 26 ? ? ? A . n A 1 27 U 27 27 ? ? ? A . n A 1 28 C 28 28 28 C C A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 G 31 31 31 G G A . n A 1 32 A 32 32 32 A A A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 A 42 42 42 A A A . n A 1 43 U 43 43 43 U U A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 C 47 47 47 C C A . n A 1 48 U 48 48 48 U U A . n A 1 49 G 49 49 49 G G A . n A 1 50 C 50 50 50 C C A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 U 53 53 53 U U A . n A 1 54 G 54 54 54 G G A . n A 1 55 U 55 55 55 U U A . n A 1 56 C 56 56 56 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 A 2 2 2 A A B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 G 8 8 8 G G B . n B 1 9 U 9 9 9 U U B . n B 1 10 G 10 10 10 G G B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 ? ? ? B . n B 1 13 G 13 13 13 G G B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 U 18 18 18 U U B . n B 1 19 C 19 19 19 C C B . n B 1 20 C 20 20 20 C C B . n B 1 21 U 21 21 21 U U B . n B 1 22 G 22 22 22 G G B . n B 1 23 G 23 23 23 G G B . n B 1 24 U 24 24 ? ? ? B . n B 1 25 U 25 25 ? ? ? B . n B 1 26 U 26 26 ? ? ? B . n B 1 27 U 27 27 ? ? ? B . n B 1 28 C 28 28 28 C C B . n B 1 29 A 29 29 29 A A B . n B 1 30 G 30 30 30 G G B . n B 1 31 G 31 31 31 G G B . n B 1 32 A 32 32 32 A A B . n B 1 33 C 33 33 33 C C B . n B 1 34 G 34 34 34 G G B . n B 1 35 G 35 35 35 G G B . n B 1 36 G 36 36 36 G G B . n B 1 37 G 37 37 37 G G B . n B 1 38 U 38 38 38 U U B . n B 1 39 U 39 39 39 U U B . n B 1 40 C 40 40 40 C C B . n B 1 41 A 41 41 41 A A B . n B 1 42 A 42 42 42 A A B . n B 1 43 U 43 43 43 U U B . n B 1 44 U 44 44 44 U U B . n B 1 45 C 45 45 45 C C B . n B 1 46 C 46 46 46 C C B . n B 1 47 C 47 47 47 C C B . n B 1 48 U 48 48 48 U U B . n B 1 49 G 49 49 49 G G B . n B 1 50 C 50 50 50 C C B . n B 1 51 G 51 51 51 G G B . n B 1 52 G 52 52 52 G G B . n B 1 53 U 53 53 53 U U B . n B 1 54 G 54 54 54 G G B . n B 1 55 U 55 55 55 U U B . n B 1 56 C 56 56 56 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 101 2 NA NA A . D 2 NA 1 102 5 NA NA A . E 2 NA 1 103 6 NA NA A . F 2 NA 1 104 9 NA NA A . G 2 NA 1 105 10 NA NA A . H 2 NA 1 106 11 NA NA A . I 2 NA 1 107 12 NA NA A . J 2 NA 1 108 13 NA NA A . K 3 SR 1 109 1 SR SR A . L 2 NA 1 101 1 NA NA B . M 2 NA 1 102 4 NA NA B . N 2 NA 1 103 8 NA NA B . O 3 SR 1 104 2 SR SR B . P 4 HOH 1 201 11 HOH HOH A . P 4 HOH 2 202 10 HOH HOH A . P 4 HOH 3 203 7 HOH HOH A . P 4 HOH 4 204 6 HOH HOH A . Q 4 HOH 1 201 9 HOH HOH B . Q 4 HOH 2 202 1 HOH HOH B . Q 4 HOH 3 203 5 HOH HOH B . Q 4 HOH 4 204 2 HOH HOH B . Q 4 HOH 5 205 3 HOH HOH B . Q 4 HOH 6 206 8 HOH HOH B . Q 4 HOH 7 207 4 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 118.002 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8K30 _cell.details ? _cell.formula_units_Z ? _cell.length_a 157.940 _cell.length_a_esd ? _cell.length_b 29.147 _cell.length_b_esd ? _cell.length_c 99.179 _cell.length_c_esd ? _cell.volume 403120.969 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8K30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8K30 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Strontium chloride hexahydrate, 0.02 M Magnesium chloride hexahydrate, 18% v/v (+ / -)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-01-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 57.65 _reflns.entry_id 8K30 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.43 _reflns.d_resolution_low 37.02 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15588 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.43 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1097 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.817 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.813 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 88.98 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8K30 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.43 _refine.ls_d_res_low 34.86 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15406 _refine.ls_number_reflns_R_free 798 _refine.ls_number_reflns_R_work 14608 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.64 _refine.ls_percent_reflns_R_free 5.18 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2648 _refine.ls_R_factor_R_free 0.2838 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2638 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 39.5877 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3975 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.43 _refine_hist.d_res_low 34.86 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 2228 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2204 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0054 ? 2457 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0708 ? 3822 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0494 ? 515 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0078 ? 103 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.0768 ? 1221 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 0.757096990727 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id A _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.43 2.58 . . 134 2367 98.58 . . . . 0.4251 . . . . . . . . . . . 0.4590 'X-RAY DIFFRACTION' 2.58 2.78 . . 150 2396 99.49 . . . . 0.3747 . . . . . . . . . . . 0.3944 'X-RAY DIFFRACTION' 2.78 3.06 . . 126 2414 98.64 . . . . 0.2839 . . . . . . . . . . . 0.3536 'X-RAY DIFFRACTION' 3.06 3.50 . . 136 2364 96.71 . . . . 0.2338 . . . . . . . . . . . 0.2685 'X-RAY DIFFRACTION' 3.50 4.41 . . 119 2482 99.05 . . . . 0.2154 . . . . . . . . . . . 0.2250 'X-RAY DIFFRACTION' 4.41 34.86 . . 133 2585 99.34 . . . . 0.2666 . . . . . . . . . . . 0.2680 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] -0.999741795881 _struct_ncs_oper.matrix[1][2] 0.0210335301749 _struct_ncs_oper.matrix[1][3] -0.00859838221335 _struct_ncs_oper.matrix[2][1] -0.0211431755227 _struct_ncs_oper.matrix[2][2] -0.999693665263 _struct_ncs_oper.matrix[2][3] 0.0128663033307 _struct_ncs_oper.matrix[3][1] -0.00832512445085 _struct_ncs_oper.matrix[3][2] 0.0130447783025 _struct_ncs_oper.matrix[3][3] 0.999880255862 _struct_ncs_oper.vector[1] 66.0174055476 _struct_ncs_oper.vector[2] 57.0835659588 _struct_ncs_oper.vector[3] 0.98212493983 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 1 through 11 or resid 13 through 56)) ; ens_1 d_2 ;chain "B" ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A G 1 . A C 3 . A G 1 A C 3 ? ? ens_1 d_2 1 B G 1 . B C 3 . B G 1 B C 3 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 8K30 _struct.title 'Crystal structure of a medaka mascRNA U23G' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8K30 _struct_keywords.text 'MascRNA, tRNA-like, MALAT1, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 4 ? Q N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8K30 _struct_ref.pdbx_db_accession 8K30 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8K30 A 1 ? 56 ? 8K30 1 ? 56 ? 1 56 2 1 8K30 B 1 ? 56 ? 8K30 1 ? 56 ? 1 56 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 230 ? 1 MORE -30 ? 1 'SSA (A^2)' 8880 ? 2 'ABSA (A^2)' 300 ? 2 MORE -41 ? 2 'SSA (A^2)' 8740 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,P 2 1 B,L,M,N,O,Q # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 39 O4 ? ? ? 1_555 C NA . NA ? ? A U 39 A NA 101 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc2 metalc ? ? A U 43 O2 ? ? ? 1_555 F NA . NA ? ? A U 43 A NA 104 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc3 metalc ? ? A U 48 O4 ? ? ? 1_555 G NA . NA ? ? A U 48 A NA 105 1_555 ? ? ? ? ? ? ? 2.897 ? ? metalc4 metalc ? ? A C 56 "O3'" ? ? ? 1_555 J NA . NA ? ? A C 56 A NA 108 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc5 metalc ? ? A C 56 "O2'" ? ? ? 1_555 J NA . NA ? ? A C 56 A NA 108 1_555 ? ? ? ? ? ? ? 2.965 ? ? metalc6 metalc ? ? H NA . NA ? ? ? 1_555 B G 1 OP1 ? ? A NA 106 B G 1 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc7 metalc ? ? H NA . NA ? ? ? 1_555 Q HOH . O ? ? A NA 106 B HOH 205 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc8 metalc ? ? I NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 107 A HOH 202 1_555 ? ? ? ? ? ? ? 2.706 ? ? metalc9 metalc ? ? I NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 107 A HOH 203 1_555 ? ? ? ? ? ? ? 3.001 ? ? metalc10 metalc ? ? I NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 107 A HOH 204 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc11 metalc ? ? B G 11 O6 ? ? ? 1_555 O SR . SR ? ? B G 11 B SR 104 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc12 metalc ? ? B U 43 O2 ? ? ? 1_555 O SR . SR ? ? B U 43 B SR 104 1_555 ? ? ? ? ? ? ? 2.582 ? ? metalc13 metalc ? ? M NA . NA ? ? ? 1_555 Q HOH . O ? ? B NA 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc14 metalc ? ? N NA . NA ? ? ? 1_555 Q HOH . O ? ? B NA 103 B HOH 206 1_555 ? ? ? ? ? ? ? 2.700 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 1 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 1 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 1 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 2 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 2 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 3 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 3 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 3 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 53 O2 ? ? A G 4 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 53 N3 ? ? A G 4 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 6 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 6 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 6 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 7 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 7 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 7 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 8 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 16 N1 ? ? A U 9 A A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 16 N6 ? ? A U 9 A A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 44 O2 ? ? A G 11 A U 44 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 39 O2 ? ? A G 13 A U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 A U 43 O4 ? ? A C 15 A U 43 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog34 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 18 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 32 N6 ? ? A U 18 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 19 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 19 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 19 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 21 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 21 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 22 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 22 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 22 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 33 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 33 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 33 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 34 N1 ? ? ? 1_555 A U 48 O2 ? ? A G 34 A U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? A G 34 O6 ? ? ? 1_555 A U 48 N3 ? ? A G 34 A U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 35 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 36 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 36 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 36 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 37 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 37 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 37 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 38 N3 ? ? ? 1_555 A A 42 N7 ? ? A U 38 A A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog62 hydrog ? ? A U 38 O2 ? ? ? 1_555 A A 42 N6 ? ? A U 38 A A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog63 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 1 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 1 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 1 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 2 N1 ? ? ? 1_555 B U 55 N3 ? ? B A 2 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 2 N6 ? ? ? 1_555 B U 55 O4 ? ? B A 2 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 54 N1 ? ? B C 3 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 54 O6 ? ? B C 3 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 54 N2 ? ? B C 3 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 4 N1 ? ? ? 1_555 B U 53 O2 ? ? B G 4 B U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? B G 4 O6 ? ? ? 1_555 B U 53 N3 ? ? B G 4 B U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? B C 5 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? B C 5 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? B C 5 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 6 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 6 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 6 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 7 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 7 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 7 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 8 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 16 N1 ? ? B U 9 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 16 N6 ? ? B U 9 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 13 N2 ? ? ? 1_555 B U 39 O2 ? ? B G 13 B U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog91 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 14 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 14 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 14 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B C 15 N4 ? ? ? 1_555 B U 43 O4 ? ? B C 15 B U 43 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog95 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 32 N1 ? ? B U 18 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 32 N6 ? ? B U 18 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 19 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 19 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 19 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 21 N3 ? ? ? 1_555 B A 29 N1 ? ? B U 21 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 21 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 21 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 22 N1 ? ? ? 1_555 B C 28 N3 ? ? B G 22 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 22 N2 ? ? ? 1_555 B C 28 O2 ? ? B G 22 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 22 O6 ? ? ? 1_555 B C 28 N4 ? ? B G 22 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 33 N3 ? ? ? 1_555 B G 49 N1 ? ? B C 33 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 33 N4 ? ? ? 1_555 B G 49 O6 ? ? B C 33 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 33 O2 ? ? ? 1_555 B G 49 N2 ? ? B C 33 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B G 34 N1 ? ? ? 1_555 B U 48 O2 ? ? B G 34 B U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog112 hydrog ? ? B G 34 O6 ? ? ? 1_555 B U 48 N3 ? ? B G 34 B U 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog113 hydrog ? ? B G 35 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 35 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 35 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 35 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 35 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 35 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 36 N1 ? ? ? 1_555 B C 46 N3 ? ? B G 36 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 36 N2 ? ? ? 1_555 B C 46 O2 ? ? B G 36 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B G 36 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 36 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B G 37 N1 ? ? ? 1_555 B C 45 N3 ? ? B G 37 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 37 N2 ? ? ? 1_555 B C 45 O2 ? ? B G 37 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B G 37 O6 ? ? ? 1_555 B C 45 N4 ? ? B G 37 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B U 38 N3 ? ? ? 1_555 B A 42 N7 ? ? B U 38 B A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog123 hydrog ? ? B U 38 O2 ? ? ? 1_555 B A 42 N6 ? ? B U 38 B A 42 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A C 56 ? A C 56 ? 1_555 NA ? J NA . ? A NA 108 ? 1_555 "O2'" ? A C 56 ? A C 56 ? 1_555 58.1 ? 2 OP1 ? B G 1 ? B G 1 ? 1_555 NA ? H NA . ? A NA 106 ? 1_555 O ? Q HOH . ? B HOH 205 ? 1_555 87.4 ? 3 O ? P HOH . ? A HOH 202 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O ? P HOH . ? A HOH 203 ? 1_555 71.3 ? 4 O ? P HOH . ? A HOH 202 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O ? P HOH . ? A HOH 204 ? 1_555 60.3 ? 5 O ? P HOH . ? A HOH 203 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O ? P HOH . ? A HOH 204 ? 1_555 54.1 ? 6 O6 ? B G 11 ? B G 11 ? 1_555 SR ? O SR . ? B SR 104 ? 1_555 O2 ? B U 43 ? B U 43 ? 1_555 107.7 ? # _pdbx_entry_details.entry_id 8K30 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 5 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 G _pdbx_validate_symm_contact.auth_seq_id_2 36 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_545 _pdbx_validate_symm_contact.dist 2.19 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 49.1571182414 24.8451616351 55.4189251323 0.6120633569 ? 0.0388861289373 ? -0.0159517502136 ? 0.53619596851 ? -0.0765496428644 ? 0.471349019238 ? 5.38478379041 ? -0.992268773505 ? 0.338973187352 ? 3.45653420264 ? -1.34458594369 ? 1.81864797455 ? 0.590188565033 ? 0.262497413959 ? -1.25083448473 ? 0.18953941422 ? -0.266240308614 ? 0.695122429586 ? 0.560475228023 ? -0.162769742927 ? -0.120902505599 ? 2 'X-RAY DIFFRACTION' ? refined 67.3371619477 17.7765410959 58.0615012432 1.17864434862 ? -0.0479761304573 ? -0.361095716115 ? 0.937902493929 ? 0.0481959794447 ? 0.790612405578 ? 0.0788562209205 ? -0.258806726021 ? -0.170302310433 ? 2.89333044344 ? 1.15764233202 ? 0.488353347619 ? 0.505169401929 ? 1.12300967021 ? -0.0924267127488 ? -0.0750550070733 ? -0.270249944499 ? 0.121492357015 ? -1.40926135891 ? 0.537645712773 ? 0.235990533409 ? 3 'X-RAY DIFFRACTION' ? refined 58.1354596861 13.223320474 71.0889956149 1.57905528763 ? -0.168128312858 ? -0.543103550303 ? 0.949881465766 ? 0.291870898244 ? 0.819605128352 ? 3.61778192903 ? -1.39832505562 ? 0.611243848916 ? 0.912752392063 ? 0.680631356597 ? 4.07978645725 ? -0.144082756898 ? -1.3752596877 ? -0.680364223099 ? 1.68642195034 ? -0.502995227199 ? -0.920412363459 ? -0.289986020902 ? -0.123729113283 ? -0.856780480323 ? 4 'X-RAY DIFFRACTION' ? refined 61.2405268479 9.73564456316 52.5827991285 0.711113748515 ? 0.162448814081 ? -0.160337974897 ? 0.961804273889 ? -0.116032090036 ? 0.559405702213 ? 3.16228781055 ? -0.88522532713 ? 0.913874875314 ? 0.866546514426 ? -1.14976256766 ? 2.79223236345 ? -0.381363732105 ? -0.327265387497 ? 0.516486202551 ? 0.67988349388 ? -0.306803741364 ? -0.396202394621 ? 0.018236833427 ? 0.218759338453 ? 0.600637118395 ? 5 'X-RAY DIFFRACTION' ? refined 43.0372143224 23.2025153056 54.3414195348 0.619852457121 ? 0.048083632336 ? 0.0401623070741 ? 0.545337614026 ? 0.0273309390835 ? 0.41782067239 ? 0.331274945413 ? -0.695469904527 ? 0.37671379701 ? 2.66180232586 ? -0.225371933304 ? 0.426198743197 ? -0.155133498592 ? 0.120979598924 ? 0.129779263951 ? 0.579342461322 ? -0.0890791236237 ? 0.547537748795 ? -0.090699638888 ? -0.109992262444 ? 0.260168749296 ? 6 'X-RAY DIFFRACTION' ? refined 23.937844941 31.3164062523 49.6497044472 0.639709253521 ? 0.154812455007 ? -0.00118722325741 ? 0.991376525884 ? -0.299023172186 ? 0.722446291207 ? 0.960930579525 ? 0.475654047867 ? -0.204206742572 ? 0.539581086079 ? -0.0823817704402 ? -0.0458371452911 ? 0.235738006235 ? 1.32090593264 ? -0.478777458229 ? -0.352825475221 ? -0.401706641118 ? 0.728836226332 ? 0.0878681437826 ? 0.0724898951903 ? 0.181022810361 ? 7 'X-RAY DIFFRACTION' ? refined 3.73457745098 36.0521363444 62.1024417389 0.831946155823 ? -0.0641324988368 ? 0.275282812709 ? 0.580040273758 ? -0.0635137327539 ? 0.861602572586 ? 2.03195530241 ? -1.06492235653 ? 0.471580531142 ? 0.5937472249 ? -0.645568631004 ? 0.946284717462 ? 0.767268961309 ? 0.689166930536 ? -0.987032097991 ? -0.91843476628 ? -0.207681284852 ? 0.648766768733 ? 0.806887658778 ? -0.175730779965 ? -0.295728051875 ? 8 'X-RAY DIFFRACTION' ? refined 8.16089945284 44.0957474572 71.9213595145 1.74421302276 ? -0.0767989527898 ? 0.577427238742 ? 1.29457640808 ? -0.0871765520174 ? 1.0184648028 ? 0.525107402162 ? -0.274388655838 ? 0.199952409385 ? 0.241684933182 ? -0.0638054218427 ? 0.451121697706 ? -0.22630067796 ? -1.28468395493 ? -0.471302097178 ? 1.65189000106 ? -0.507201127129 ? 1.33911161272 ? 0.237211138479 ? -0.494464457248 ? 0.202249065948 ? 9 'X-RAY DIFFRACTION' ? refined 14.0145057607 39.9457945855 54.2101976884 0.595281664992 ? 0.0774747392387 ? -0.00453272125079 ? 0.652634318733 ? -0.0938045287573 ? 0.542078999551 ? 2.24497555717 ? 0.602058928319 ? -0.105266546305 ? 2.12932444658 ? 0.353883545317 ? 1.37793404167 ? -0.127430023705 ? 0.675800199607 ? -0.791483958092 ? 0.144895809576 ? 0.194956974258 ? -0.081252271766 ? -0.0513679173076 ? -0.320822815514 ? -0.0748228048202 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 10 ? ? ;chain 'A' and (resid 1 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 11 ? A ? A 15 ? ? ;chain 'A' and (resid 11 through 15 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 16 ? A ? A 36 ? ? ;chain 'A' and (resid 16 through 36 ) ; 4 'X-RAY DIFFRACTION' 4 A ? A 37 ? A ? A 46 ? ? ;chain 'A' and (resid 37 through 46 ) ; 5 'X-RAY DIFFRACTION' 5 A ? A 47 ? A ? A 56 ? ? ;chain 'A' and (resid 47 through 56 ) ; 6 'X-RAY DIFFRACTION' 6 B ? B 1 ? B ? B 5 ? ? ;chain 'B' and (resid 1 through 5 ) ; 7 'X-RAY DIFFRACTION' 7 B ? B 6 ? B ? B 16 ? ? ;chain 'B' and (resid 6 through 16 ) ; 8 'X-RAY DIFFRACTION' 8 B ? B 17 ? B ? B 36 ? ? ;chain 'B' and (resid 17 through 36 ) ; 9 'X-RAY DIFFRACTION' 9 B ? B 37 ? B ? B 56 ? ? ;chain 'B' and (resid 37 through 56 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 24 ? A U 24 2 1 Y 1 A U 25 ? A U 25 3 1 Y 1 A U 26 ? A U 26 4 1 Y 1 A U 27 ? A U 27 5 1 Y 1 B U 12 ? B U 12 6 1 Y 1 B U 24 ? B U 24 7 1 Y 1 B U 25 ? B U 25 8 1 Y 1 B U 26 ? B U 26 9 1 Y 1 B U 27 ? B U 27 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 NA NA NA N N 114 SR SR SR N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8K30 'double helix' 8K30 'a-form double helix' 8K30 'parallel strands' 8K30 'hairpin loop' 8K30 'bulge loop' 8K30 'mismatched base pair' 8K30 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 28 1_555 A G 22 1_555 0.243 -0.345 0.476 10.256 -9.194 -6.009 1 A_C28:G22_A A 28 ? A 22 ? 19 1 1 A A 29 1_555 A U 21 1_555 -0.050 -0.138 0.239 -1.106 -4.705 -2.128 2 A_A29:U21_A A 29 ? A 21 ? 20 1 1 A G 30 1_555 A C 20 1_555 -0.058 -0.145 -0.029 -1.933 -1.387 -0.534 3 A_G30:C20_A A 30 ? A 20 ? 19 1 1 A G 31 1_555 A C 19 1_555 -0.170 -0.107 -0.026 -2.001 -6.569 0.235 4 A_G31:C19_A A 31 ? A 19 ? 19 1 1 A A 32 1_555 A U 18 1_555 0.181 -0.127 0.442 -1.979 -6.818 0.583 5 A_A32:U18_A A 32 ? A 18 ? 20 1 1 A G 8 1_555 A C 17 1_555 -0.197 -0.140 0.165 -3.820 5.514 3.774 6 A_G8:C17_A A 8 ? A 17 ? 19 1 1 A U 9 1_555 A A 16 1_555 -0.010 -0.136 0.097 0.123 2.775 6.365 7 A_U9:A16_A A 9 ? A 16 ? 20 1 1 A G 10 1_555 A C 15 1_555 -0.129 -0.216 -0.283 -7.265 2.902 2.359 8 A_G10:C15_A A 10 ? A 15 ? 19 1 1 A G 11 1_555 A U 44 1_555 0.175 4.103 -1.528 -40.329 10.676 111.142 9 A_G11:U44_A A 11 ? A 44 ? ? 2 1 A G 13 1_555 A U 39 1_555 0.020 6.217 0.072 -22.154 -6.745 102.127 10 A_G13:U39_A A 13 ? A 39 ? ? 2 1 A A 42 1_555 A U 38 1_555 -4.248 -2.279 0.292 6.884 11.465 -97.624 11 A_A42:U38_A A 42 ? A 38 ? 24 4 1 A C 45 1_555 A G 37 1_555 0.285 -0.178 0.245 12.648 -9.224 -0.172 12 A_C45:G37_A A 45 ? A 37 ? 19 1 1 A C 46 1_555 A G 36 1_555 0.185 -0.155 -0.013 1.513 -9.013 3.043 13 A_C46:G36_A A 46 ? A 36 ? 19 1 1 A C 47 1_555 A G 35 1_555 0.194 -0.178 -0.044 1.346 -8.297 -0.019 14 A_C47:G35_A A 47 ? A 35 ? 19 1 1 A U 48 1_555 A G 34 1_555 2.446 -0.593 0.139 2.873 -9.537 -1.859 15 A_U48:G34_A A 48 ? A 34 ? 28 1 1 A G 49 1_555 A C 33 1_555 -0.137 -0.146 0.045 -0.391 -5.741 3.695 16 A_G49:C33_A A 49 ? A 33 ? 19 1 1 A C 50 1_555 A G 7 1_555 0.240 -0.193 0.385 -3.023 -7.919 -2.832 17 A_C50:G7_A A 50 ? A 7 ? 19 1 1 A G 51 1_555 A C 6 1_555 -0.304 -0.224 0.284 -1.251 -14.303 1.145 18 A_G51:C6_A A 51 ? A 6 ? 19 1 1 A G 52 1_555 A C 5 1_555 -0.395 -0.373 0.278 -5.430 -11.002 -1.143 19 A_G52:C5_A A 52 ? A 5 ? 19 1 1 A U 53 1_555 A G 4 1_555 1.794 -0.322 0.367 -3.337 -11.549 4.860 20 A_U53:G4_A A 53 ? A 4 ? 28 1 1 A G 54 1_555 A C 3 1_555 -0.170 -0.248 0.181 -4.246 -10.662 0.943 21 A_G54:C3_A A 54 ? A 3 ? 19 1 1 A U 55 1_555 A A 2 1_555 -0.125 -0.236 0.309 -4.721 -9.442 -1.532 22 A_U55:A2_A A 55 ? A 2 ? 20 1 1 A C 56 1_555 A G 1 1_555 0.278 -0.233 -0.041 7.626 -8.288 -0.263 23 A_C56:G1_A A 56 ? A 1 ? 19 1 1 B G 1 1_555 B C 56 1_555 -0.156 -0.245 0.182 -1.519 -7.106 -2.983 24 B_G1:C56_B B 1 ? B 56 ? 19 1 1 B A 2 1_555 B U 55 1_555 0.194 -0.292 0.305 8.428 -8.206 -5.964 25 B_A2:U55_B B 2 ? B 55 ? 20 1 1 B C 3 1_555 B G 54 1_555 0.194 -0.198 0.214 7.807 -10.103 0.803 26 B_C3:G54_B B 3 ? B 54 ? 19 1 1 B G 4 1_555 B U 53 1_555 -2.007 -0.404 0.512 4.992 -8.755 -1.996 27 B_G4:U53_B B 4 ? B 53 ? 28 1 1 B C 5 1_555 B G 52 1_555 0.329 -0.293 0.406 0.250 -12.232 -0.896 28 B_C5:G52_B B 5 ? B 52 ? 19 1 1 B C 6 1_555 B G 51 1_555 0.220 -0.239 0.581 -6.752 -11.439 -0.066 29 B_C6:G51_B B 6 ? B 51 ? 19 1 1 B G 7 1_555 B C 50 1_555 -0.106 -0.205 0.162 4.732 -5.190 -2.837 30 B_G7:C50_B B 7 ? B 50 ? 19 1 1 B C 33 1_555 B G 49 1_555 0.153 -0.276 -0.254 3.325 -5.171 5.122 31 B_C33:G49_B B 33 ? B 49 ? 19 1 1 B G 34 1_555 B U 48 1_555 -2.447 -0.565 0.148 -2.424 -6.747 2.974 32 B_G34:U48_B B 34 ? B 48 ? 28 1 1 B G 35 1_555 B C 47 1_555 -0.159 -0.102 -0.023 -2.641 -1.863 -1.028 33 B_G35:C47_B B 35 ? B 47 ? 19 1 1 B G 36 1_555 B C 46 1_555 -0.126 -0.235 0.088 -1.151 -9.019 -1.056 34 B_G36:C46_B B 36 ? B 46 ? 19 1 1 B G 37 1_555 B C 45 1_555 -0.328 -0.266 0.213 -7.377 -8.498 1.154 35 B_G37:C45_B B 37 ? B 45 ? 19 1 1 B U 38 1_555 B A 42 1_555 4.384 -2.327 0.442 -6.172 13.746 -97.331 36 B_U38:A42_B B 38 ? B 42 ? 24 4 1 B U 39 1_555 B G 13 1_555 0.226 -5.754 0.103 21.613 11.480 -96.569 37 B_U39:G13_B B 39 ? B 13 ? ? 6 1 A G 14 1_555 A C 40 1_555 -0.058 -0.329 0.281 -8.856 -5.650 -2.220 38 A_G14:C40_A A 14 ? A 40 ? 19 1 1 B C 15 1_555 B G 10 1_555 0.130 -0.126 -0.213 6.818 -1.170 3.210 39 B_C15:G10_B B 15 ? B 10 ? 19 1 1 B A 16 1_555 B U 9 1_555 -0.040 -0.179 -0.094 0.374 0.320 3.319 40 B_A16:U9_B B 16 ? B 9 ? 20 1 1 B C 17 1_555 B G 8 1_555 0.194 -0.224 -0.187 1.901 1.638 2.916 41 B_C17:G8_B B 17 ? B 8 ? 19 1 1 B U 18 1_555 B A 32 1_555 -0.209 -0.082 0.090 -0.714 -5.924 1.613 42 B_U18:A32_B B 18 ? B 32 ? 20 1 1 B C 19 1_555 B G 31 1_555 0.179 -0.106 -0.126 2.951 -6.235 0.128 43 B_C19:G31_B B 19 ? B 31 ? 19 1 1 B C 20 1_555 B G 30 1_555 0.082 -0.084 0.050 1.724 1.734 -0.009 44 B_C20:G30_B B 20 ? B 30 ? 19 1 1 B U 21 1_555 B A 29 1_555 -0.013 -0.078 0.110 2.032 2.998 -1.980 45 B_U21:A29_B B 21 ? B 29 ? 20 1 1 B G 22 1_555 B C 28 1_555 -0.194 -0.048 0.005 -0.318 4.322 2.700 46 B_G22:C28_B B 22 ? B 28 ? 19 1 1 B G 14 1_555 B C 40 1_555 -0.172 -0.321 0.132 -10.710 -7.452 0.559 47 B_G14:C40_B B 14 ? B 40 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 28 1_555 A G 22 1_555 A A 29 1_555 A U 21 1_555 -0.965 -2.734 2.928 -4.030 18.787 28.454 -6.644 1.212 1.087 33.787 7.248 34.223 1 AA_C28A29:U21G22_AA A 28 ? A 22 ? A 29 ? A 21 ? 1 A A 29 1_555 A U 21 1_555 A G 30 1_555 A C 20 1_555 -0.003 -1.815 3.195 2.073 2.924 32.116 -3.755 0.355 3.016 5.265 -3.733 32.310 2 AA_A29G30:C20U21_AA A 29 ? A 21 ? A 30 ? A 20 ? 1 A G 30 1_555 A C 20 1_555 A G 31 1_555 A C 19 1_555 0.498 -1.577 3.304 1.970 4.503 35.144 -3.238 -0.532 3.108 7.412 -3.243 35.475 3 AA_G30G31:C19C20_AA A 30 ? A 20 ? A 31 ? A 19 ? 1 A G 31 1_555 A C 19 1_555 A A 32 1_555 A U 18 1_555 0.336 -1.472 3.403 1.258 2.882 32.036 -3.182 -0.376 3.272 5.207 -2.273 32.186 4 AA_G31A32:U18C19_AA A 31 ? A 19 ? A 32 ? A 18 ? 1 A A 32 1_555 A U 18 1_555 A G 8 1_555 A C 17 1_555 -0.520 -1.663 3.178 3.805 7.407 40.996 -3.047 1.097 2.792 10.446 -5.367 41.797 5 AA_A32G8:C17U18_AA A 32 ? A 18 ? A 8 ? A 17 ? 1 A G 8 1_555 A C 17 1_555 A U 9 1_555 A A 16 1_555 0.385 -2.197 3.074 2.167 4.705 34.850 -4.260 -0.347 2.781 7.802 -3.593 35.222 6 AA_G8U9:A16C17_AA A 8 ? A 17 ? A 9 ? A 16 ? 1 A U 9 1_555 A A 16 1_555 A G 10 1_555 A C 15 1_555 -0.042 -1.763 2.986 3.703 19.197 30.440 -4.939 0.471 1.613 32.674 -6.303 36.052 7 AA_U9G10:C15A16_AA A 9 ? A 16 ? A 10 ? A 15 ? 1 A G 10 1_555 A C 15 1_555 A G 11 1_555 A U 44 1_555 2.442 -1.287 2.922 18.925 4.246 -4.493 2.951 10.514 -1.384 -16.873 75.211 -19.904 8 AA_G10G11:U44C15_AA A 10 ? A 15 ? A 11 ? A 44 ? 1 A G 13 1_555 A U 39 1_555 A A 42 1_555 A U 38 1_555 -2.426 -2.328 -2.609 159.063 -69.639 42.987 -1.817 -0.272 -2.156 -35.627 -81.377 174.082 9 AA_G13A42:U38U39_AA A 13 ? A 39 ? A 42 ? A 38 ? 1 A A 42 1_555 A U 38 1_555 A C 45 1_555 A G 37 1_555 1.795 -2.097 3.176 -8.370 2.161 88.578 -1.540 -1.446 2.992 1.544 5.982 88.912 10 AA_A42C45:G37U38_AA A 42 ? A 38 ? A 45 ? A 37 ? 1 A C 45 1_555 A G 37 1_555 A C 46 1_555 A G 36 1_555 -0.358 -2.152 3.367 -0.972 8.039 34.248 -4.711 0.454 2.815 13.419 1.623 35.164 11 AA_C45C46:G36G37_AA A 45 ? A 37 ? A 46 ? A 36 ? 1 A C 46 1_555 A G 36 1_555 A C 47 1_555 A G 35 1_555 -0.466 -1.835 3.228 -0.665 5.166 28.426 -4.756 0.795 2.867 10.410 1.340 28.890 12 AA_C46C47:G35G36_AA A 46 ? A 36 ? A 47 ? A 35 ? 1 A C 47 1_555 A G 35 1_555 A U 48 1_555 A G 34 1_555 0.003 -1.493 3.197 -0.221 6.498 39.038 -2.924 -0.029 2.921 9.643 0.328 39.555 13 AA_C47U48:G34G35_AA A 47 ? A 35 ? A 48 ? A 34 ? 1 A U 48 1_555 A G 34 1_555 A G 49 1_555 A C 33 1_555 0.340 -2.300 3.036 3.614 8.457 23.918 -7.155 0.071 2.138 19.507 -8.336 25.601 14 AA_U48G49:C33G34_AA A 48 ? A 34 ? A 49 ? A 33 ? 1 A G 49 1_555 A C 33 1_555 A C 50 1_555 A G 7 1_555 1.281 -1.460 3.264 0.658 4.062 45.699 -2.219 -1.587 3.147 5.218 -0.845 45.874 15 AA_G49C50:G7C33_AA A 49 ? A 33 ? A 50 ? A 7 ? 1 A C 50 1_555 A G 7 1_555 A G 51 1_555 A C 6 1_555 0.612 -1.371 2.900 1.149 13.669 31.376 -4.080 -0.895 2.155 23.897 -2.008 34.175 16 AA_C50G51:C6G7_AA A 50 ? A 7 ? A 51 ? A 6 ? 1 A G 51 1_555 A C 6 1_555 A G 52 1_555 A C 5 1_555 -0.451 -1.548 3.295 -2.096 4.737 32.697 -3.501 0.446 3.069 8.349 3.694 33.094 17 AA_G51G52:C5C6_AA A 51 ? A 6 ? A 52 ? A 5 ? 1 A G 52 1_555 A C 5 1_555 A U 53 1_555 A G 4 1_555 0.603 -1.415 3.132 0.953 3.882 39.182 -2.532 -0.789 2.997 5.770 -1.417 39.378 18 AA_G52U53:G4C5_AA A 52 ? A 5 ? A 53 ? A 4 ? 1 A U 53 1_555 A G 4 1_555 A G 54 1_555 A C 3 1_555 -0.541 -1.687 2.989 3.257 14.143 25.709 -5.669 1.605 1.760 29.026 -6.684 29.462 19 AA_U53G54:C3G4_AA A 53 ? A 4 ? A 54 ? A 3 ? 1 A G 54 1_555 A C 3 1_555 A U 55 1_555 A A 2 1_555 -0.145 -1.090 3.282 0.030 10.344 32.081 -3.491 0.255 2.805 18.138 -0.052 33.665 20 AA_G54U55:A2C3_AA A 54 ? A 3 ? A 55 ? A 2 ? 1 A U 55 1_555 A A 2 1_555 A C 56 1_555 A G 1 1_555 0.696 -1.199 2.798 3.718 3.169 32.654 -2.567 -0.690 2.733 5.596 -6.567 33.008 21 AA_U55C56:G1A2_AA A 55 ? A 2 ? A 56 ? A 1 ? 1 A C 56 1_555 A G 1 1_555 B G 1 1_555 B C 56 1_555 -0.041 -3.887 3.593 -2.933 5.989 -13.196 8.183 -3.553 4.770 -24.147 -11.825 -14.779 22 AB_C56G1:C56G1_BA A 56 ? A 1 ? B 1 ? B 56 ? 1 B G 1 1_555 B C 56 1_555 B A 2 1_555 B U 55 1_555 -0.783 -1.406 2.954 -1.714 3.219 34.347 -2.812 1.083 2.849 5.433 2.892 34.534 23 BB_G1A2:U55C56_BB B 1 ? B 56 ? B 2 ? B 55 ? 1 B A 2 1_555 B U 55 1_555 B C 3 1_555 B G 54 1_555 0.269 -1.138 3.269 -0.166 7.201 31.988 -3.210 -0.505 2.948 12.864 0.297 32.768 24 BB_A2C3:G54U55_BB B 2 ? B 55 ? B 3 ? B 54 ? 1 B C 3 1_555 B G 54 1_555 B G 4 1_555 B U 53 1_555 0.065 -2.199 2.875 -6.334 13.622 24.213 -6.694 -1.164 1.403 29.158 13.558 28.435 25 BB_C3G4:U53G54_BB B 3 ? B 54 ? B 4 ? B 53 ? 1 B G 4 1_555 B U 53 1_555 B C 5 1_555 B G 52 1_555 -0.234 -1.506 3.286 -0.225 3.329 41.967 -2.436 0.303 3.164 4.640 0.314 42.094 26 BB_G4C5:G52U53_BB B 4 ? B 53 ? B 5 ? B 52 ? 1 B C 5 1_555 B G 52 1_555 B C 6 1_555 B G 51 1_555 0.321 -1.879 3.277 -0.541 7.202 33.084 -4.323 -0.633 2.812 12.463 0.935 33.842 27 BB_C5C6:G51G52_BB B 5 ? B 52 ? B 6 ? B 51 ? 1 B C 6 1_555 B G 51 1_555 B G 7 1_555 B C 50 1_555 -0.663 -1.497 2.714 2.806 13.763 29.760 -4.361 1.522 1.797 25.112 -5.120 32.840 28 BB_C6G7:C50G51_BB B 6 ? B 51 ? B 7 ? B 50 ? 1 B G 7 1_555 B C 50 1_555 B C 33 1_555 B G 49 1_555 -0.995 -1.192 3.250 -1.327 5.041 46.723 -1.901 1.140 3.138 6.333 1.667 46.997 29 BB_G7C33:G49C50_BB B 7 ? B 50 ? B 33 ? B 49 ? 1 B C 33 1_555 B G 49 1_555 B G 34 1_555 B U 48 1_555 -0.447 -2.427 3.061 -4.686 10.106 23.571 -7.608 -0.039 1.926 23.155 10.736 26.037 30 BB_C33G34:U48G49_BB B 33 ? B 49 ? B 34 ? B 48 ? 1 B G 34 1_555 B U 48 1_555 B G 35 1_555 B C 47 1_555 -0.104 -1.561 3.243 0.579 2.981 39.658 -2.631 0.218 3.121 4.386 -0.852 39.769 31 BB_G34G35:C47U48_BB B 34 ? B 48 ? B 35 ? B 47 ? 1 B G 35 1_555 B C 47 1_555 B G 36 1_555 B C 46 1_555 0.648 -2.046 3.094 2.805 6.175 28.614 -5.213 -0.741 2.654 12.277 -5.577 29.390 32 BB_G35G36:C46C47_BB B 35 ? B 47 ? B 36 ? B 46 ? 1 B G 36 1_555 B C 46 1_555 B G 37 1_555 B C 45 1_555 0.648 -2.121 3.133 4.448 8.624 36.004 -4.348 -0.485 2.632 13.649 -7.040 37.247 33 BB_G36G37:C45C46_BB B 36 ? B 46 ? B 37 ? B 45 ? 1 B G 37 1_555 B C 45 1_555 B U 38 1_555 B A 42 1_555 -1.990 -1.907 3.322 6.372 4.521 86.780 -1.482 1.582 3.117 3.285 -4.630 87.062 34 BB_G37U38:A42C45_BB B 37 ? B 45 ? B 38 ? B 42 ? 1 B U 38 1_555 B A 42 1_555 B U 39 1_555 B G 13 1_555 2.131 -1.978 3.260 6.415 3.219 45.101 -2.837 -2.174 3.375 4.165 -8.302 45.640 35 BB_U38U39:G13A42_BB B 38 ? B 42 ? B 39 ? B 13 ? 1 B C 15 1_555 B G 10 1_555 B A 16 1_555 B U 9 1_555 -0.356 -1.795 3.078 -3.237 17.101 28.570 -5.410 0.188 1.779 31.257 5.917 33.360 36 BB_C15A16:U9G10_BB B 15 ? B 10 ? B 16 ? B 9 ? 1 B A 16 1_555 B U 9 1_555 B C 17 1_555 B G 8 1_555 -0.133 -1.961 3.144 -1.335 4.052 37.318 -3.538 0.045 2.926 6.307 2.077 37.552 37 BB_A16C17:G8U9_BB B 16 ? B 9 ? B 17 ? B 8 ? 1 B C 17 1_555 B G 8 1_555 B U 18 1_555 B A 32 1_555 0.745 -1.759 3.164 -3.316 9.349 41.538 -3.267 -1.326 2.661 12.961 4.598 42.655 38 BB_C17U18:A32G8_BB B 17 ? B 8 ? B 18 ? B 32 ? 1 B U 18 1_555 B A 32 1_555 B C 19 1_555 B G 31 1_555 -0.474 -1.469 3.214 -1.723 3.120 30.681 -3.342 0.567 3.075 5.872 3.242 30.882 39 BB_U18C19:G31A32_BB B 18 ? B 32 ? B 19 ? B 31 ? 1 B C 19 1_555 B G 31 1_555 B C 20 1_555 B G 30 1_555 -0.502 -1.535 3.157 -2.217 7.654 35.445 -3.450 0.520 2.802 12.379 3.585 36.302 40 BB_C19C20:G30G31_BB B 19 ? B 31 ? B 20 ? B 30 ? 1 B C 20 1_555 B G 30 1_555 B U 21 1_555 B A 29 1_555 -0.132 -1.744 3.069 -0.838 4.161 33.276 -3.643 0.104 2.838 7.230 1.456 33.538 41 BB_C20U21:A29G30_BB B 20 ? B 30 ? B 21 ? B 29 ? 1 B U 21 1_555 B A 29 1_555 B G 22 1_555 B C 28 1_555 0.737 -2.228 3.341 0.993 5.838 21.151 -7.961 -1.576 2.667 15.515 -2.640 21.956 42 BB_U21G22:C28A29_BB B 21 ? B 29 ? B 22 ? B 28 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8K0Y _pdbx_initial_refinement_model.details 'Crystal structure of a medaka mascRNA U23G' # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8K30 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.006332 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003367 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034309 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011420 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? SR ? ? 32.18652 5.63919 ? ? 2.35430 57.90393 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #