data_8K3N # _entry.id 8K3N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8K3N pdb_00008k3n 10.2210/pdb8k3n/pdb WWPDB D_1300039474 ? ? BMRB 36584 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'trans X-Pro peptide bond conformer' 8K3M unspecified BMRB 'Solution NMR structure of cis X-Pro peptide bond conformer of a single disulfide conopeptide Mo1853' 36584 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8K3N _pdbx_database_status.recvd_initial_deposition_date 2023-07-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kancherla, A.K.' 1 0000-0002-8647-4666 'Sarma, S.P.' 2 0000-0001-7619-8904 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country II _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Indian J.Biochem.Biophys.' _citation.journal_id_ASTM IJBBBQ _citation.journal_id_CSD 1176 _citation.journal_id_ISSN 0301-1208 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 60 _citation.language ? _citation.page_first 710 _citation.page_last 728 _citation.title 'Solution structures and thermodynamics of cis-trans X-Pro conformers of a novel single disulfide conopeptide.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.56042/ijbb.v60i9.4061 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kancherla, A.K.' 1 0000-0002-8647-4666 primary 'Sarma, S.P.' 2 0000-0001-7619-8904 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Mo1853 _entity.formula_weight 1858.217 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LVSGCNFVYVKPCRGGR _entity_poly.pdbx_seq_one_letter_code_can LVSGCNFVYVKPCRGGR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 VAL n 1 3 SER n 1 4 GLY n 1 5 CYS n 1 6 ASN n 1 7 PHE n 1 8 VAL n 1 9 TYR n 1 10 VAL n 1 11 LYS n 1 12 PRO n 1 13 CYS n 1 14 ARG n 1 15 GLY n 1 16 GLY n 1 17 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 17 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Conus monile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 351660 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8K3N _struct_ref.pdbx_db_accession 8K3N _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8K3N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8K3N _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '1D proton' 1 isotropic 2 1 1 '2D DQF-COSY' 1 isotropic 3 1 1 '2D TOCSY' 1 isotropic 4 1 1 '2D NOESY' 1 isotropic 5 1 1 '2D ROESY' 1 isotropic 6 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 7 2 2 '2D TOCSY' 1 isotropic 8 3 2 '2D TOCSY' 1 isotropic 9 4 2 '2D TOCSY' 1 isotropic 10 5 2 '2D TOCSY' 1 isotropic 11 6 2 '2D TOCSY' 1 isotropic 12 7 2 '2D TOCSY' 1 isotropic 13 8 2 '2D TOCSY' 1 isotropic 14 9 2 '2D TOCSY' 1 isotropic 15 10 2 '2D TOCSY' 1 isotropic 16 11 2 '2D TOCSY' 1 isotropic 17 12 2 '2D TOCSY' 1 isotropic 18 13 2 '2D TOCSY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 atm 1 6 0 ;HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. Dodecylphosphorylcholine-d36 was added to a final concentration of 5 mM. pH was not adjusted. ; ? M mo1853_DPC_303K ? pH ? ? K 2 278 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_278K ? pH ? ? K 3 283 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_283K ? pH ? ? K 4 288 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_288K ? pH ? ? K 5 293 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_293K ? pH ? ? K 6 298 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_298K ? pH ? ? K 7 303 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_303K ? pH ? ? K 8 308 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_308K ? pH ? ? K 9 313 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_313K ? pH ? ? K 10 318 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_318K ? pH ? ? K 11 323 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_323K ? pH ? ? K 12 328 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_328K ? pH ? ? K 13 332 atm 1 6 0 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' ? M mo1853_MQ_332K ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM mo1853, 5 mM d-36 Dodecylphosphorylcholine, 90% H2O/10% D2O' '90% H2O/10% D2O' mo1853_DPC micelle ;HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. Dodecylphosphorylcholine-d36 was added to a final concentration of 5 mM. pH was not adjusted. ; 2 '1 mM mo1853, 90% H2O/10% D2O' '90% H2O/10% D2O' mo1853_MQ solution 'HPLC purified sample was dissolved in sterile milliQ water with 10% D2O for lock solvent. pH was not adjusted.' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details '5 mm triple resonance cryoprobe with a single (z-axis) pulsed field gradient accessory' # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 8K3N 'simulated annealing' ? 2 8K3N 'molecular dynamics' ? 3 # _pdbx_nmr_ensemble.entry_id 8K3N _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8K3N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 2.1 CCPN 2 'structure calculation' CYANA 3.0 'Guntert, Mumenthaler and Wuthrich' 3 refinement CNS 1.3 'Brunger, Adams, Clore, Gros, Nilges and Read' 4 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8K3N _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8K3N _struct.title 'Solution NMR structure of cis X-Pro peptide bond conformer of a single disulfide conopeptide Mo1853' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8K3N _struct_keywords.text 'conopeptide, conotoxin, peptide bond isomerization, disulfide bond, TOXIN' _struct_keywords.pdbx_keywords TOXIN # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 5 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 13 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 5 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 13 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 1 -2.28 2 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 2 -3.34 3 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 3 0.02 4 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 4 -5.74 5 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 5 -1.18 6 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 6 -7.73 7 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 7 -15.11 8 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 8 -0.23 9 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 9 -5.91 10 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 10 -0.19 11 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 11 -1.21 12 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 12 -1.18 13 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 13 -7.86 14 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 14 0.40 15 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 15 -2.92 16 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 16 -1.52 17 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 17 -6.24 18 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 18 -2.06 19 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 19 -6.44 20 LYS 11 A . ? LYS 11 A PRO 12 A ? PRO 12 A 20 2.36 # _atom_sites.entry_id 8K3N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 18 LEU LEU A . n A 1 2 VAL 2 2 19 VAL VAL A . n A 1 3 SER 3 3 20 SER SER A . n A 1 4 GLY 4 4 21 GLY GLY A . n A 1 5 CYS 5 5 22 CYS CYS A . n A 1 6 ASN 6 6 23 ASN ASN A . n A 1 7 PHE 7 7 24 PHE PHE A . n A 1 8 VAL 8 8 25 VAL VAL A . n A 1 9 TYR 9 9 26 TYR TYR A . n A 1 10 VAL 10 10 27 VAL VAL A . n A 1 11 LYS 11 11 28 LYS LYS A . n A 1 12 PRO 12 12 29 PRO PRO A . n A 1 13 CYS 13 13 30 CYS CYS A . n A 1 14 ARG 14 14 31 ARG ARG A . n A 1 15 GLY 15 15 32 GLY GLY A . n A 1 16 GLY 16 16 33 GLY GLY A . n A 1 17 ARG 17 17 34 ARG ARG A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email sidd@iisc.ac.in _pdbx_contact_author.name_first Siddhartha _pdbx_contact_author.name_last Sarma _pdbx_contact_author.name_mi P _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7619-8904 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 mo1853 1 ? mM 'natural abundance' 1 Dodecylphosphorylcholine 5 ? mM d-36 2 mo1853 1 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 PRO A 12 ? ? -79.10 -162.59 2 3 PRO A 12 ? ? -78.89 -166.97 3 3 CYS A 13 ? ? -81.44 44.71 4 5 TYR A 9 ? ? 49.17 15.07 5 5 PRO A 12 ? ? -78.00 -166.52 6 6 TYR A 9 ? ? 47.29 28.45 7 7 TYR A 9 ? ? 51.41 15.60 8 8 TYR A 9 ? ? 54.46 15.50 9 8 PRO A 12 ? ? -78.96 -166.37 10 8 CYS A 13 ? ? -80.22 33.89 11 9 TYR A 9 ? ? 52.14 13.08 12 9 PRO A 12 ? ? -86.62 -158.70 13 11 TYR A 9 ? ? 47.32 23.44 14 11 PRO A 12 ? ? -78.27 -156.50 15 11 CYS A 13 ? ? -73.54 35.74 16 12 TYR A 9 ? ? 51.49 16.70 17 12 PRO A 12 ? ? -86.94 -158.74 18 13 PRO A 12 ? ? -75.83 -155.89 19 14 TYR A 9 ? ? 39.84 47.34 20 15 TYR A 9 ? ? 47.32 22.27 21 15 PRO A 12 ? ? -82.04 -155.87 22 15 CYS A 13 ? ? -79.52 36.06 23 16 TYR A 9 ? ? 44.38 29.52 24 17 PRO A 12 ? ? -87.66 -151.35 25 17 CYS A 13 ? ? -78.56 29.82 26 18 TYR A 9 ? ? 48.53 19.47 27 18 PRO A 12 ? ? -78.99 -156.03 28 18 CYS A 13 ? ? -74.06 37.43 29 19 PRO A 12 ? ? -78.91 -157.84 30 19 CYS A 13 ? ? -78.36 37.40 31 20 TYR A 9 ? ? 62.09 -0.31 32 20 PRO A 12 ? ? -82.78 -156.72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 CYS N N N N 45 CYS CA C N R 46 CYS C C N N 47 CYS O O N N 48 CYS CB C N N 49 CYS SG S N N 50 CYS OXT O N N 51 CYS H H N N 52 CYS H2 H N N 53 CYS HA H N N 54 CYS HB2 H N N 55 CYS HB3 H N N 56 CYS HG H N N 57 CYS HXT H N N 58 GLY N N N N 59 GLY CA C N N 60 GLY C C N N 61 GLY O O N N 62 GLY OXT O N N 63 GLY H H N N 64 GLY H2 H N N 65 GLY HA2 H N N 66 GLY HA3 H N N 67 GLY HXT H N N 68 LEU N N N N 69 LEU CA C N S 70 LEU C C N N 71 LEU O O N N 72 LEU CB C N N 73 LEU CG C N N 74 LEU CD1 C N N 75 LEU CD2 C N N 76 LEU OXT O N N 77 LEU H H N N 78 LEU H2 H N N 79 LEU HA H N N 80 LEU HB2 H N N 81 LEU HB3 H N N 82 LEU HG H N N 83 LEU HD11 H N N 84 LEU HD12 H N N 85 LEU HD13 H N N 86 LEU HD21 H N N 87 LEU HD22 H N N 88 LEU HD23 H N N 89 LEU HXT H N N 90 LYS N N N N 91 LYS CA C N S 92 LYS C C N N 93 LYS O O N N 94 LYS CB C N N 95 LYS CG C N N 96 LYS CD C N N 97 LYS CE C N N 98 LYS NZ N N N 99 LYS OXT O N N 100 LYS H H N N 101 LYS H2 H N N 102 LYS HA H N N 103 LYS HB2 H N N 104 LYS HB3 H N N 105 LYS HG2 H N N 106 LYS HG3 H N N 107 LYS HD2 H N N 108 LYS HD3 H N N 109 LYS HE2 H N N 110 LYS HE3 H N N 111 LYS HZ1 H N N 112 LYS HZ2 H N N 113 LYS HZ3 H N N 114 LYS HXT H N N 115 PHE N N N N 116 PHE CA C N S 117 PHE C C N N 118 PHE O O N N 119 PHE CB C N N 120 PHE CG C Y N 121 PHE CD1 C Y N 122 PHE CD2 C Y N 123 PHE CE1 C Y N 124 PHE CE2 C Y N 125 PHE CZ C Y N 126 PHE OXT O N N 127 PHE H H N N 128 PHE H2 H N N 129 PHE HA H N N 130 PHE HB2 H N N 131 PHE HB3 H N N 132 PHE HD1 H N N 133 PHE HD2 H N N 134 PHE HE1 H N N 135 PHE HE2 H N N 136 PHE HZ H N N 137 PHE HXT H N N 138 PRO N N N N 139 PRO CA C N S 140 PRO C C N N 141 PRO O O N N 142 PRO CB C N N 143 PRO CG C N N 144 PRO CD C N N 145 PRO OXT O N N 146 PRO H H N N 147 PRO HA H N N 148 PRO HB2 H N N 149 PRO HB3 H N N 150 PRO HG2 H N N 151 PRO HG3 H N N 152 PRO HD2 H N N 153 PRO HD3 H N N 154 PRO HXT H N N 155 SER N N N N 156 SER CA C N S 157 SER C C N N 158 SER O O N N 159 SER CB C N N 160 SER OG O N N 161 SER OXT O N N 162 SER H H N N 163 SER H2 H N N 164 SER HA H N N 165 SER HB2 H N N 166 SER HB3 H N N 167 SER HG H N N 168 SER HXT H N N 169 TYR N N N N 170 TYR CA C N S 171 TYR C C N N 172 TYR O O N N 173 TYR CB C N N 174 TYR CG C Y N 175 TYR CD1 C Y N 176 TYR CD2 C Y N 177 TYR CE1 C Y N 178 TYR CE2 C Y N 179 TYR CZ C Y N 180 TYR OH O N N 181 TYR OXT O N N 182 TYR H H N N 183 TYR H2 H N N 184 TYR HA H N N 185 TYR HB2 H N N 186 TYR HB3 H N N 187 TYR HD1 H N N 188 TYR HD2 H N N 189 TYR HE1 H N N 190 TYR HE2 H N N 191 TYR HH H N N 192 TYR HXT H N N 193 VAL N N N N 194 VAL CA C N S 195 VAL C C N N 196 VAL O O N N 197 VAL CB C N N 198 VAL CG1 C N N 199 VAL CG2 C N N 200 VAL OXT O N N 201 VAL H H N N 202 VAL H2 H N N 203 VAL HA H N N 204 VAL HB H N N 205 VAL HG11 H N N 206 VAL HG12 H N N 207 VAL HG13 H N N 208 VAL HG21 H N N 209 VAL HG22 H N N 210 VAL HG23 H N N 211 VAL HXT H N N 212 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 CYS N CA sing N N 43 CYS N H sing N N 44 CYS N H2 sing N N 45 CYS CA C sing N N 46 CYS CA CB sing N N 47 CYS CA HA sing N N 48 CYS C O doub N N 49 CYS C OXT sing N N 50 CYS CB SG sing N N 51 CYS CB HB2 sing N N 52 CYS CB HB3 sing N N 53 CYS SG HG sing N N 54 CYS OXT HXT sing N N 55 GLY N CA sing N N 56 GLY N H sing N N 57 GLY N H2 sing N N 58 GLY CA C sing N N 59 GLY CA HA2 sing N N 60 GLY CA HA3 sing N N 61 GLY C O doub N N 62 GLY C OXT sing N N 63 GLY OXT HXT sing N N 64 LEU N CA sing N N 65 LEU N H sing N N 66 LEU N H2 sing N N 67 LEU CA C sing N N 68 LEU CA CB sing N N 69 LEU CA HA sing N N 70 LEU C O doub N N 71 LEU C OXT sing N N 72 LEU CB CG sing N N 73 LEU CB HB2 sing N N 74 LEU CB HB3 sing N N 75 LEU CG CD1 sing N N 76 LEU CG CD2 sing N N 77 LEU CG HG sing N N 78 LEU CD1 HD11 sing N N 79 LEU CD1 HD12 sing N N 80 LEU CD1 HD13 sing N N 81 LEU CD2 HD21 sing N N 82 LEU CD2 HD22 sing N N 83 LEU CD2 HD23 sing N N 84 LEU OXT HXT sing N N 85 LYS N CA sing N N 86 LYS N H sing N N 87 LYS N H2 sing N N 88 LYS CA C sing N N 89 LYS CA CB sing N N 90 LYS CA HA sing N N 91 LYS C O doub N N 92 LYS C OXT sing N N 93 LYS CB CG sing N N 94 LYS CB HB2 sing N N 95 LYS CB HB3 sing N N 96 LYS CG CD sing N N 97 LYS CG HG2 sing N N 98 LYS CG HG3 sing N N 99 LYS CD CE sing N N 100 LYS CD HD2 sing N N 101 LYS CD HD3 sing N N 102 LYS CE NZ sing N N 103 LYS CE HE2 sing N N 104 LYS CE HE3 sing N N 105 LYS NZ HZ1 sing N N 106 LYS NZ HZ2 sing N N 107 LYS NZ HZ3 sing N N 108 LYS OXT HXT sing N N 109 PHE N CA sing N N 110 PHE N H sing N N 111 PHE N H2 sing N N 112 PHE CA C sing N N 113 PHE CA CB sing N N 114 PHE CA HA sing N N 115 PHE C O doub N N 116 PHE C OXT sing N N 117 PHE CB CG sing N N 118 PHE CB HB2 sing N N 119 PHE CB HB3 sing N N 120 PHE CG CD1 doub Y N 121 PHE CG CD2 sing Y N 122 PHE CD1 CE1 sing Y N 123 PHE CD1 HD1 sing N N 124 PHE CD2 CE2 doub Y N 125 PHE CD2 HD2 sing N N 126 PHE CE1 CZ doub Y N 127 PHE CE1 HE1 sing N N 128 PHE CE2 CZ sing Y N 129 PHE CE2 HE2 sing N N 130 PHE CZ HZ sing N N 131 PHE OXT HXT sing N N 132 PRO N CA sing N N 133 PRO N CD sing N N 134 PRO N H sing N N 135 PRO CA C sing N N 136 PRO CA CB sing N N 137 PRO CA HA sing N N 138 PRO C O doub N N 139 PRO C OXT sing N N 140 PRO CB CG sing N N 141 PRO CB HB2 sing N N 142 PRO CB HB3 sing N N 143 PRO CG CD sing N N 144 PRO CG HG2 sing N N 145 PRO CG HG3 sing N N 146 PRO CD HD2 sing N N 147 PRO CD HD3 sing N N 148 PRO OXT HXT sing N N 149 SER N CA sing N N 150 SER N H sing N N 151 SER N H2 sing N N 152 SER CA C sing N N 153 SER CA CB sing N N 154 SER CA HA sing N N 155 SER C O doub N N 156 SER C OXT sing N N 157 SER CB OG sing N N 158 SER CB HB2 sing N N 159 SER CB HB3 sing N N 160 SER OG HG sing N N 161 SER OXT HXT sing N N 162 TYR N CA sing N N 163 TYR N H sing N N 164 TYR N H2 sing N N 165 TYR CA C sing N N 166 TYR CA CB sing N N 167 TYR CA HA sing N N 168 TYR C O doub N N 169 TYR C OXT sing N N 170 TYR CB CG sing N N 171 TYR CB HB2 sing N N 172 TYR CB HB3 sing N N 173 TYR CG CD1 doub Y N 174 TYR CG CD2 sing Y N 175 TYR CD1 CE1 sing Y N 176 TYR CD1 HD1 sing N N 177 TYR CD2 CE2 doub Y N 178 TYR CD2 HD2 sing N N 179 TYR CE1 CZ doub Y N 180 TYR CE1 HE1 sing N N 181 TYR CE2 CZ sing Y N 182 TYR CE2 HE2 sing N N 183 TYR CZ OH sing N N 184 TYR OH HH sing N N 185 TYR OXT HXT sing N N 186 VAL N CA sing N N 187 VAL N H sing N N 188 VAL N H2 sing N N 189 VAL CA C sing N N 190 VAL CA CB sing N N 191 VAL CA HA sing N N 192 VAL C O doub N N 193 VAL C OXT sing N N 194 VAL CB CG1 sing N N 195 VAL CB CG2 sing N N 196 VAL CB HB sing N N 197 VAL CG1 HG11 sing N N 198 VAL CG1 HG12 sing N N 199 VAL CG1 HG13 sing N N 200 VAL CG2 HG21 sing N N 201 VAL CG2 HG22 sing N N 202 VAL CG2 HG23 sing N N 203 VAL OXT HXT sing N N 204 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country India _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' #