HEADER HYDROLASE 25-JUL-23 8K6W TITLE DUTPASE OF HELICOBACTER PYLORI 26695 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUTPASE,DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI 26695; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: ATCC 700392 / 26695; SOURCE 5 GENE: DUT, HP_0865; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KUMARI,G.SAMUDRALA REVDAT 1 31-JUL-24 8K6W 0 JRNL AUTH K.KUMARI,G.SAMUDRALA JRNL TITL DUTPASE OF HELICOBACTER PYLORI 26695 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.711 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16500 REMARK 3 B22 (A**2) : -0.16500 REMARK 3 B33 (A**2) : 0.53500 REMARK 3 B12 (A**2) : -0.08200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.436 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.121 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3023 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2961 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4084 ; 1.339 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6818 ; 0.447 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 7.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 6.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;15.384 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3473 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 434 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 14 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1415 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 2.530 ; 2.991 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1549 ; 2.513 ; 2.991 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1931 ; 3.954 ; 5.351 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1932 ; 3.954 ; 5.355 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1474 ; 3.605 ; 3.471 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1473 ; 3.589 ; 3.469 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2153 ; 5.812 ; 6.167 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2154 ; 5.810 ; 6.169 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1161 24.8660 9.8179 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.2200 REMARK 3 T33: 0.0173 T12: -0.0565 REMARK 3 T13: -0.0330 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8383 L22: 1.0978 REMARK 3 L33: 0.5418 L12: 0.4265 REMARK 3 L13: 0.5111 L23: 0.4720 REMARK 3 S TENSOR REMARK 3 S11: 0.2619 S12: 0.1110 S13: 0.0325 REMARK 3 S21: 0.1982 S22: -0.3338 S23: 0.0590 REMARK 3 S31: -0.0023 S32: 0.0425 S33: 0.0719 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -29.9752 18.0126 -6.9552 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1510 REMARK 3 T33: 0.0920 T12: 0.0911 REMARK 3 T13: -0.0916 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.5862 L22: 1.9644 REMARK 3 L33: 0.6277 L12: 0.4973 REMARK 3 L13: 0.5840 L23: 0.2490 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: 0.1059 S13: 0.0825 REMARK 3 S21: -0.1585 S22: -0.1864 S23: 0.2131 REMARK 3 S31: 0.1112 S32: 0.1381 S33: 0.0839 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -18.0163 32.8084 -7.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.2383 REMARK 3 T33: 0.0254 T12: 0.0127 REMARK 3 T13: -0.0367 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 0.9588 L22: 1.7859 REMARK 3 L33: 0.3813 L12: 0.8647 REMARK 3 L13: -0.2276 L23: 0.3554 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: 0.1520 S13: 0.0360 REMARK 3 S21: -0.2585 S22: 0.1209 S23: 0.1244 REMARK 3 S31: -0.0268 S32: 0.0064 S33: 0.0551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8K6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 58.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 46.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS H4 CONDITION:0.1 M AMINO ACID REMARK 280 MIX, 0.1 M BUFFER SYSTEM PH 6.5, 50% V/V PRECIPITANT MIX 4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.18500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.18500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.18500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 127 REMARK 465 ASP A 128 REMARK 465 GLU A 129 REMARK 465 THR A 130 REMARK 465 SER A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 PHE A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 THR A 140 REMARK 465 GLY A 141 REMARK 465 VAL A 142 REMARK 465 SER A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 ARG B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 GLY B 135 REMARK 465 GLY B 136 REMARK 465 PHE B 137 REMARK 465 GLY B 138 REMARK 465 SER B 139 REMARK 465 THR B 140 REMARK 465 GLY B 141 REMARK 465 VAL B 142 REMARK 465 SER B 143 REMARK 465 LYS B 144 REMARK 465 ALA B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 GLU C 129 REMARK 465 THR C 130 REMARK 465 SER C 131 REMARK 465 ARG C 132 REMARK 465 GLY C 133 REMARK 465 SER C 134 REMARK 465 GLY C 135 REMARK 465 GLY C 136 REMARK 465 PHE C 137 REMARK 465 GLY C 138 REMARK 465 SER C 139 REMARK 465 THR C 140 REMARK 465 GLY C 141 REMARK 465 VAL C 142 REMARK 465 SER C 143 REMARK 465 LYS C 144 REMARK 465 ALA C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 HIS C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CD CE NZ REMARK 470 LYS A 16 CD CE NZ REMARK 470 ARG A 85 NH1 REMARK 470 LYS A 98 CD CE NZ REMARK 470 LYS B 4 CD CE NZ REMARK 470 LYS B 16 CD CE NZ REMARK 470 LYS B 98 CE NZ REMARK 470 LYS B 118 CD CE NZ REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 LYS C 16 NZ REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 GLU C 125 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 52 143.42 -37.73 REMARK 500 ASP B 83 37.87 -97.58 REMARK 500 THR B 130 -157.19 -147.00 REMARK 500 ASP C 97 34.12 -90.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 8K6W A 1 145 UNP O25536 DUT_HELPY 1 145 DBREF 8K6W B 1 145 UNP O25536 DUT_HELPY 1 145 DBREF 8K6W C 1 145 UNP O25536 DUT_HELPY 1 145 SEQADV 8K6W ALA A 0 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS A 146 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS A 147 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS A 148 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS A 149 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS A 150 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS A 151 UNP O25536 EXPRESSION TAG SEQADV 8K6W ALA B 0 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS B 146 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS B 147 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS B 148 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS B 149 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS B 150 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS B 151 UNP O25536 EXPRESSION TAG SEQADV 8K6W ALA C 0 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS C 146 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS C 147 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS C 148 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS C 149 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS C 150 UNP O25536 EXPRESSION TAG SEQADV 8K6W HIS C 151 UNP O25536 EXPRESSION TAG SEQRES 1 A 152 ALA MET LYS ILE LYS ILE GLN LYS ILE HIS PRO ASN ALA SEQRES 2 A 152 LEU ILE PRO LYS TYR GLN THR ASP GLY SER SER GLY PHE SEQRES 3 A 152 ASP LEU HIS ALA VAL GLU GLU VAL MET ILE LYS PRO HIS SEQRES 4 A 152 SER VAL GLY LEU VAL LYS ILE GLY ILE CYS LEU SER LEU SEQRES 5 A 152 GLU VAL GLY TYR GLU LEU GLN VAL ARG THR ARG SER GLY SEQRES 6 A 152 LEU ALA LEU ASN HIS GLN VAL MET VAL LEU ASN SER PRO SEQRES 7 A 152 GLY THR VAL ASP ASN ASP TYR ARG GLY GLU ILE LYS VAL SEQRES 8 A 152 ILE LEU ALA ASN LEU SER ASP LYS ASP PHE LYS VAL GLN SEQRES 9 A 152 VAL GLY ASP ARG ILE ALA GLN GLY VAL VAL GLN LYS THR SEQRES 10 A 152 TYR LYS ALA GLU PHE ILE GLU CYS GLU GLN LEU ASP GLU SEQRES 11 A 152 THR SER ARG GLY SER GLY GLY PHE GLY SER THR GLY VAL SEQRES 12 A 152 SER LYS ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 152 ALA MET LYS ILE LYS ILE GLN LYS ILE HIS PRO ASN ALA SEQRES 2 B 152 LEU ILE PRO LYS TYR GLN THR ASP GLY SER SER GLY PHE SEQRES 3 B 152 ASP LEU HIS ALA VAL GLU GLU VAL MET ILE LYS PRO HIS SEQRES 4 B 152 SER VAL GLY LEU VAL LYS ILE GLY ILE CYS LEU SER LEU SEQRES 5 B 152 GLU VAL GLY TYR GLU LEU GLN VAL ARG THR ARG SER GLY SEQRES 6 B 152 LEU ALA LEU ASN HIS GLN VAL MET VAL LEU ASN SER PRO SEQRES 7 B 152 GLY THR VAL ASP ASN ASP TYR ARG GLY GLU ILE LYS VAL SEQRES 8 B 152 ILE LEU ALA ASN LEU SER ASP LYS ASP PHE LYS VAL GLN SEQRES 9 B 152 VAL GLY ASP ARG ILE ALA GLN GLY VAL VAL GLN LYS THR SEQRES 10 B 152 TYR LYS ALA GLU PHE ILE GLU CYS GLU GLN LEU ASP GLU SEQRES 11 B 152 THR SER ARG GLY SER GLY GLY PHE GLY SER THR GLY VAL SEQRES 12 B 152 SER LYS ALA HIS HIS HIS HIS HIS HIS SEQRES 1 C 152 ALA MET LYS ILE LYS ILE GLN LYS ILE HIS PRO ASN ALA SEQRES 2 C 152 LEU ILE PRO LYS TYR GLN THR ASP GLY SER SER GLY PHE SEQRES 3 C 152 ASP LEU HIS ALA VAL GLU GLU VAL MET ILE LYS PRO HIS SEQRES 4 C 152 SER VAL GLY LEU VAL LYS ILE GLY ILE CYS LEU SER LEU SEQRES 5 C 152 GLU VAL GLY TYR GLU LEU GLN VAL ARG THR ARG SER GLY SEQRES 6 C 152 LEU ALA LEU ASN HIS GLN VAL MET VAL LEU ASN SER PRO SEQRES 7 C 152 GLY THR VAL ASP ASN ASP TYR ARG GLY GLU ILE LYS VAL SEQRES 8 C 152 ILE LEU ALA ASN LEU SER ASP LYS ASP PHE LYS VAL GLN SEQRES 9 C 152 VAL GLY ASP ARG ILE ALA GLN GLY VAL VAL GLN LYS THR SEQRES 10 C 152 TYR LYS ALA GLU PHE ILE GLU CYS GLU GLN LEU ASP GLU SEQRES 11 C 152 THR SER ARG GLY SER GLY GLY PHE GLY SER THR GLY VAL SEQRES 12 C 152 SER LYS ALA HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *23(H2 O) HELIX 1 AA1 ARG A 62 GLN A 70 1 9 HELIX 2 AA2 ARG B 62 GLN B 70 1 9 HELIX 3 AA3 ARG C 62 GLN C 70 1 9 SHEET 1 AA1 5 VAL A 71 VAL A 73 0 SHEET 2 AA1 5 GLU A 87 ASN A 94 -1 O ALA A 93 N MET A 72 SHEET 3 AA1 5 SER A 39 LEU A 51 -1 N SER A 39 O ASN A 94 SHEET 4 AA1 5 MET A 1 LYS A 7 -1 N LYS A 4 O SER A 50 SHEET 5 AA1 5 ALA C 119 GLU C 123 1 O ILE C 122 N ILE A 5 SHEET 1 AA2 4 GLY A 24 HIS A 28 0 SHEET 2 AA2 4 ARG A 107 LYS A 115 -1 O GLY A 111 N PHE A 25 SHEET 3 AA2 4 TYR A 55 THR A 61 -1 N ARG A 60 O GLN A 110 SHEET 4 AA2 4 GLY A 78 VAL A 80 -1 O GLY A 78 N VAL A 59 SHEET 1 AA3 2 VAL A 33 ILE A 35 0 SHEET 2 AA3 2 PHE A 100 VAL A 102 -1 O VAL A 102 N VAL A 33 SHEET 1 AA4 5 ALA A 119 GLU A 123 0 SHEET 2 AA4 5 MET B 1 LYS B 7 1 O ILE B 3 N ILE A 122 SHEET 3 AA4 5 SER B 39 LEU B 51 -1 O SER B 50 N LYS B 4 SHEET 4 AA4 5 GLU B 87 ASN B 94 -1 O VAL B 90 N VAL B 43 SHEET 5 AA4 5 VAL B 71 VAL B 73 -1 N MET B 72 O ALA B 93 SHEET 1 AA5 4 PHE B 25 HIS B 28 0 SHEET 2 AA5 4 ARG B 107 LYS B 115 -1 O GLY B 111 N PHE B 25 SHEET 3 AA5 4 TYR B 55 THR B 61 -1 N ARG B 60 O GLN B 110 SHEET 4 AA5 4 GLY B 78 VAL B 80 -1 O GLY B 78 N VAL B 59 SHEET 1 AA6 2 VAL B 33 ILE B 35 0 SHEET 2 AA6 2 PHE B 100 VAL B 102 -1 O VAL B 102 N VAL B 33 SHEET 1 AA7 5 ALA B 119 GLU B 123 0 SHEET 2 AA7 5 MET C 1 LYS C 7 1 O ILE C 3 N GLU B 120 SHEET 3 AA7 5 SER C 39 LEU C 51 -1 O CYS C 48 N GLN C 6 SHEET 4 AA7 5 GLU C 87 ASN C 94 -1 O ILE C 88 N ILE C 47 SHEET 5 AA7 5 VAL C 71 VAL C 73 -1 N MET C 72 O ALA C 93 SHEET 1 AA8 4 GLY C 24 HIS C 28 0 SHEET 2 AA8 4 ARG C 107 LYS C 115 -1 O GLY C 111 N PHE C 25 SHEET 3 AA8 4 TYR C 55 ARG C 60 -1 N GLN C 58 O VAL C 112 SHEET 4 AA8 4 GLY C 78 VAL C 80 -1 O GLY C 78 N VAL C 59 SHEET 1 AA9 2 VAL C 33 ILE C 35 0 SHEET 2 AA9 2 PHE C 100 VAL C 102 -1 O VAL C 102 N VAL C 33 CISPEP 1 SER A 76 PRO A 77 0 -7.75 CISPEP 2 SER B 76 PRO B 77 0 -4.14 CISPEP 3 SER C 76 PRO C 77 0 -5.56 CRYST1 102.360 102.360 78.370 90.00 90.00 120.00 P 63 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009769 0.005640 0.000000 0.00000 SCALE2 0.000000 0.011281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012760 0.00000