HEADER OXIDOREDUCTASE 26-JUL-23 8K72
TITLE FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR IN COMPLEX WITH ZN(II) AND
TITLE 2 2-(3-HYDROXY-2-((3-(PHENYLSULFONAMIDO)PROPANOYL)IMINO)-2,3-
TITLE 3 DIHYDROTHIAZOL-4-YL)ACETIC ACID
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR, FIH, 2OG DEPENDENT
KEYWDS 2 DIOXYGENASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,T.P.CORNER,R.Z.R.TEO,L.BREWITZ,C.J.SCHOFIELD
REVDAT 1 13-DEC-23 8K72 0
JRNL AUTH T.P.CORNER,R.Z.R.TEO,Y.WU,E.SALAH,Y.NAKASHIMA,G.FIORINI,
JRNL AUTH 2 A.TUMBER,A.BRASNETT,J.P.HOLT-MARTYN,W.D.FIGG JR.,X.ZHANG,
JRNL AUTH 3 L.BREWITZ,C.J.SCHOFIELD
JRNL TITL STRUCTURE-GUIDED OPTIMISATION OF N -HYDROXYTHIAZOLE-DERIVED
JRNL TITL 2 INHIBITORS OF FACTOR INHIBITING HYPOXIA-INDUCIBLE
JRNL TITL 3 FACTOR-ALPHA.
JRNL REF CHEM SCI V. 14 12098 2023
JRNL REFN ISSN 2041-6520
JRNL PMID 37969593
JRNL DOI 10.1039/D3SC04253G
REMARK 2
REMARK 2 RESOLUTION. 2.45 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.24
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 20979
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.239
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970
REMARK 3 FREE R VALUE TEST SET COUNT : 1043
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 61.2400 - 4.6900 1.00 3047 163 0.1686 0.2007
REMARK 3 2 4.6900 - 3.7200 1.00 2871 143 0.1625 0.2107
REMARK 3 3 3.7200 - 3.2500 1.00 2866 135 0.2149 0.2484
REMARK 3 4 3.2500 - 2.9500 1.00 2803 152 0.2572 0.3066
REMARK 3 5 2.9500 - 2.7400 1.00 2800 143 0.2904 0.3583
REMARK 3 6 2.7400 - 2.5800 1.00 2784 152 0.3371 0.3282
REMARK 3 7 2.5800 - 2.4500 1.00 2765 155 0.3623 0.3859
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.372
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.252
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 72.14
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.83
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 2943
REMARK 3 ANGLE : 0.564 4008
REMARK 3 CHIRALITY : 0.043 392
REMARK 3 PLANARITY : 0.003 523
REMARK 3 DIHEDRAL : 17.965 1071
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.8783 -29.1113 22.3127
REMARK 3 T TENSOR
REMARK 3 T11: 1.0743 T22: 0.8244
REMARK 3 T33: 1.1616 T12: 0.0376
REMARK 3 T13: 0.2240 T23: -0.0719
REMARK 3 L TENSOR
REMARK 3 L11: 0.9767 L22: 0.4996
REMARK 3 L33: 0.3164 L12: -0.7120
REMARK 3 L13: -0.4891 L23: 0.3987
REMARK 3 S TENSOR
REMARK 3 S11: -0.2169 S12: -0.3253 S13: -0.2238
REMARK 3 S21: 0.6355 S22: -0.3775 S23: 0.8472
REMARK 3 S31: 0.4436 S32: -0.6551 S33: 0.5568
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 95 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.4027 -16.0865 14.0791
REMARK 3 T TENSOR
REMARK 3 T11: 0.7987 T22: 0.5950
REMARK 3 T33: 0.8078 T12: 0.1282
REMARK 3 T13: 0.1800 T23: 0.0242
REMARK 3 L TENSOR
REMARK 3 L11: 2.6445 L22: 4.1134
REMARK 3 L33: 3.1859 L12: 0.8262
REMARK 3 L13: 0.5776 L23: 0.8030
REMARK 3 S TENSOR
REMARK 3 S11: 0.0811 S12: 0.3427 S13: 0.4970
REMARK 3 S21: 0.1321 S22: -0.1395 S23: 0.6156
REMARK 3 S31: -0.4210 S32: -0.0879 S33: 0.0311
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 119 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.6245 -31.5007 -7.7314
REMARK 3 T TENSOR
REMARK 3 T11: 1.1917 T22: 0.9931
REMARK 3 T33: 1.1128 T12: 0.0082
REMARK 3 T13: 0.1213 T23: 0.0890
REMARK 3 L TENSOR
REMARK 3 L11: 3.2597 L22: 0.1083
REMARK 3 L33: 0.0149 L12: 0.5741
REMARK 3 L13: -0.2423 L23: -0.0394
REMARK 3 S TENSOR
REMARK 3 S11: -0.4137 S12: 1.2652 S13: 0.4401
REMARK 3 S21: -0.3578 S22: 0.2382 S23: -0.0916
REMARK 3 S31: 0.1514 S32: -0.5729 S33: 0.2439
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 138 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.6356 -14.8732 -4.4597
REMARK 3 T TENSOR
REMARK 3 T11: 1.4508 T22: 1.0765
REMARK 3 T33: 1.0746 T12: 0.3682
REMARK 3 T13: -0.1718 T23: 0.1587
REMARK 3 L TENSOR
REMARK 3 L11: 1.0381 L22: 4.1030
REMARK 3 L33: 2.9159 L12: 1.0848
REMARK 3 L13: -0.8592 L23: 0.3846
REMARK 3 S TENSOR
REMARK 3 S11: -0.1928 S12: 0.7732 S13: 1.0332
REMARK 3 S21: -0.8623 S22: -0.0096 S23: 0.8661
REMARK 3 S31: -0.5977 S32: -0.6605 S33: 0.1974
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 21.5343 -26.5797 9.7450
REMARK 3 T TENSOR
REMARK 3 T11: 0.7412 T22: 0.5602
REMARK 3 T33: 0.7462 T12: 0.0464
REMARK 3 T13: 0.1136 T23: 0.0341
REMARK 3 L TENSOR
REMARK 3 L11: 0.9937 L22: 3.6627
REMARK 3 L33: 2.7747 L12: -0.6541
REMARK 3 L13: -0.6466 L23: 2.0874
REMARK 3 S TENSOR
REMARK 3 S11: 0.0588 S12: 0.0548 S13: 0.1569
REMARK 3 S21: -0.0405 S22: 0.0793 S23: 0.2252
REMARK 3 S31: -0.1471 S32: -0.0739 S33: -0.1337
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 39.9568 -41.3241 2.6022
REMARK 3 T TENSOR
REMARK 3 T11: 0.6282 T22: 0.7710
REMARK 3 T33: 0.7576 T12: -0.0193
REMARK 3 T13: 0.0230 T23: 0.0010
REMARK 3 L TENSOR
REMARK 3 L11: 3.6535 L22: 6.8962
REMARK 3 L33: 2.5353 L12: -1.4705
REMARK 3 L13: -1.2714 L23: 0.2949
REMARK 3 S TENSOR
REMARK 3 S11: -0.0877 S12: -0.0615 S13: 0.6975
REMARK 3 S21: -0.2629 S22: 0.2710 S23: -0.4084
REMARK 3 S31: -0.0625 S32: 0.2561 S33: -0.1990
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8K72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1300033517.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 20-NOV-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21056
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450
REMARK 200 RESOLUTION RANGE LOW (A) : 72.530
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.50
REMARK 200 R MERGE (I) : 0.16800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 25.60
REMARK 200 R MERGE FOR SHELL (I) : 5.07800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4B7K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.53
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.27 MM FIH, 0.5 MM ZINC ACETATE, 2 MM
REMARK 280 TC167, 0.1 M HEPES, PH 7.5, 6%W/V PEG400, 1.6 M AMMONIUM SULFATE,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.52500
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.30500
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.30500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.26250
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.30500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.30500
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.78750
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.30500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.30500
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.26250
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.30500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.30500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.78750
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.52500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31350 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -258.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 86.61000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -86.61000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 29 CD OE1 OE2
REMARK 470 ARG A 117 NE CZ NH1 NH2
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 LYS A 176 CE NZ
REMARK 470 LYS A 298 NZ
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 311 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 44.87 -148.81
REMARK 500 ASN A 151 -154.52 -117.37
REMARK 500 ILE A 210 -58.95 -120.55
REMARK 500 TYR A 228 70.27 46.53
REMARK 500 ARG A 238 -0.73 85.42
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 568 DISTANCE = 6.07 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 409 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 130.1
REMARK 620 3 HIS A 279 NE2 84.6 91.7
REMARK 620 4 VJF A 410 N11 89.0 104.7 162.6
REMARK 620 5 VJF A 410 N02 86.4 141.6 105.1 58.2
REMARK 620 6 VJF A 410 O01 84.4 141.5 72.8 90.4 32.3
REMARK 620 N 1 2 3 4 5
DBREF 8K72 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET SO4 A 401 5
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET SO4 A 405 5
HET GOL A 406 6
HET GOL A 407 6
HET GOL A 408 6
HET ZN A 409 1
HET VJF A 410 25
HET SO4 A 411 5
HET SO4 A 412 5
HET SO4 A 413 5
HET SO4 A 414 5
HET SO4 A 415 5
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM ZN ZINC ION
HETNAM VJF 2-[(2~{Z})-3-OXIDANYL-2-[3-(PHENYLSULFONYLAMINO)
HETNAM 2 VJF PROPANOYLIMINO]-1,3-THIAZOL-4-YL]ETHANOIC ACID
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 SO4 10(O4 S 2-)
FORMUL 7 GOL 3(C3 H8 O3)
FORMUL 10 ZN ZN 2+
FORMUL 11 VJF C14 H15 N3 O6 S2
FORMUL 17 HOH *68(H2 O)
HELIX 1 AA1 GLU A 19 LEU A 23 5 5
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 GLU A 105 ASN A 110 5 6
HELIX 7 AA7 PHE A 125 GLY A 139 1 15
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 ARG A 177 1 12
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 GLY A 331 1 21
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189
SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 ARG A 120 LYS A 124 -1 O MET A 123 N PHE A 90
LINK NE2 HIS A 199 ZN ZN A 409 1555 1555 2.33
LINK OD2 ASP A 201 ZN ZN A 409 1555 1555 1.96
LINK NE2 HIS A 279 ZN ZN A 409 1555 1555 2.33
LINK ZN ZN A 409 N11 VJF A 410 1555 1555 2.52
LINK ZN ZN A 409 N02 VJF A 410 1555 1555 2.65
LINK ZN ZN A 409 O01 VJF A 410 1555 1555 1.91
CISPEP 1 TYR A 308 PRO A 309 0 2.08
CRYST1 86.610 86.610 145.050 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011546 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011546 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006894 0.00000