HEADER HYDROLASE 26-JUL-23 8K7H TITLE CRYSTAL STRUCTURE OF HUMAN LYSOSOMAL ALPHA-GALACTOSIDASE A IN COMPLEX TITLE 2 WITH (2R,3S,4R)-2-(HYDROXYMETHYL)-1-METHYLPYRROLIDINE-3,4-DIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GALACTOSIDASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-D-GALACTOSIDASE A,ALPHA-D-GALACTOSIDE COMPND 5 GALACTOHYDROLASE,GALACTOSYLGALACTOSYLGLUCOSYLCERAMIDASE GLA, COMPND 6 MELIBIASE; COMPND 7 EC: 3.2.1.22; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLA; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ALPHA-GALACTOSIDASE, GLYCOSIDASE, IMINOSUGAR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.LI,K.F.HUANG,T.P.KO,W.C.CHENG REVDAT 1 10-APR-24 8K7H 0 JRNL AUTH H.Y.LI,H.Y.LIN,S.K.CHANG,Y.T.CHIU,C.C.HOU,T.P.KO,K.F.HUANG, JRNL AUTH 2 D.M.NIU,W.C.CHENG JRNL TITL MECHANISTIC INSIGHTS INTO DIBASIC IMINOSUGARS AS JRNL TITL 2 PH-SELECTIVE PHARMACOLOGICAL CHAPERONES TO STABILIZE HUMAN JRNL TITL 3 ALPHA-GALACTOSIDASE. JRNL REF JACS AU V. 4 908 2024 JRNL REFN ESSN 2691-3704 JRNL PMID 38559739 JRNL DOI 10.1021/JACSAU.3C00684 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 45825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.430 REMARK 3 FREE R VALUE TEST SET COUNT : 3751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6300 - 6.8300 1.00 3179 152 0.1889 0.2278 REMARK 3 2 6.8200 - 5.4200 1.00 3204 146 0.1795 0.2306 REMARK 3 3 5.4200 - 4.7400 1.00 3187 149 0.1419 0.1550 REMARK 3 4 4.7400 - 4.3100 1.00 3185 148 0.1229 0.1506 REMARK 3 5 4.3100 - 4.0000 1.00 3230 150 0.1212 0.1510 REMARK 3 6 4.0000 - 3.7700 1.00 3144 148 0.1325 0.1757 REMARK 3 7 3.7600 - 3.5800 1.00 3211 153 0.1425 0.1557 REMARK 3 8 3.5800 - 3.4200 1.00 3220 154 0.1397 0.2143 REMARK 3 9 3.4200 - 3.2900 1.00 3181 144 0.1596 0.1639 REMARK 3 10 3.2900 - 3.1800 1.00 3204 142 0.1648 0.2360 REMARK 3 11 3.1800 - 3.0800 1.00 3154 148 0.1726 0.2488 REMARK 3 12 3.0800 - 2.9900 1.00 3217 146 0.1846 0.2170 REMARK 3 13 2.9900 - 2.9100 1.00 3159 146 0.1843 0.2400 REMARK 3 14 2.9100 - 2.8400 1.00 3211 140 0.1894 0.2011 REMARK 3 15 2.8400 - 2.7800 1.00 3250 148 0.1977 0.2636 REMARK 3 16 2.7800 - 2.7200 1.00 3177 148 0.2064 0.2984 REMARK 3 17 2.7200 - 2.6600 1.00 3094 150 0.2123 0.2399 REMARK 3 18 2.6600 - 2.6100 0.99 3229 144 0.2141 0.2705 REMARK 3 19 2.6100 - 2.5600 0.99 3171 146 0.2252 0.2650 REMARK 3 20 2.5600 - 2.5200 0.99 3106 144 0.2333 0.2664 REMARK 3 21 2.5200 - 2.4800 0.96 3128 141 0.2340 0.2617 REMARK 3 22 2.4800 - 2.4400 0.93 2925 136 0.2356 0.2295 REMARK 3 23 2.4400 - 2.4100 0.87 2795 138 0.2293 0.2824 REMARK 3 24 2.4100 - 2.3700 0.80 2531 103 0.2348 0.3036 REMARK 3 25 2.3700 - 2.3400 0.68 2194 108 0.2314 0.2754 REMARK 3 26 2.3400 - 2.3100 0.61 1955 101 0.2425 0.2821 REMARK 3 27 2.3100 - 2.2800 0.56 1771 78 0.2571 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.257 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6617 REMARK 3 ANGLE : 0.761 8987 REMARK 3 CHIRALITY : 0.047 962 REMARK 3 PLANARITY : 0.007 1147 REMARK 3 DIHEDRAL : 15.183 2412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -43.1078 21.4740 -22.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.1346 REMARK 3 T33: 0.1776 T12: 0.0062 REMARK 3 T13: 0.0152 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.4137 L22: 0.3111 REMARK 3 L33: 0.5598 L12: 0.0216 REMARK 3 L13: -0.0916 L23: -0.1094 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.0424 S13: -0.0676 REMARK 3 S21: -0.0058 S22: -0.0472 S23: -0.0172 REMARK 3 S31: -0.0055 S32: 0.0163 S33: -0.0244 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 32 through 692 or REMARK 3 resid 716 through 800)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 32 through 421 or REMARK 3 resid 692 through 693 or resid 715 REMARK 3 through 800)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8K7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1R47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL BUFFER 7.2, 25% REMARK 280 PEG4000 AND 200 MM AMMONIUM SULFATE, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.23067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.11533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.11533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 144.23067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 422 REMARK 465 MET A 423 REMARK 465 SER A 424 REMARK 465 LEU A 425 REMARK 465 LYS A 426 REMARK 465 ASP A 427 REMARK 465 LEU A 428 REMARK 465 LEU A 429 REMARK 465 LEU B 425 REMARK 465 LYS B 426 REMARK 465 ASP B 427 REMARK 465 LEU B 428 REMARK 465 LEU B 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 630 O HOH A 870 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 824 O HOH A 875 6444 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 51 -136.98 53.92 REMARK 500 CYS A 52 49.72 -109.95 REMARK 500 ASP A 92 -153.71 -99.00 REMARK 500 CYS A 94 37.75 76.72 REMARK 500 ASP A 266 -175.72 85.69 REMARK 500 ASN A 272 -127.53 -98.38 REMARK 500 GLU A 358 41.23 -100.52 REMARK 500 MET B 51 -138.07 54.44 REMARK 500 CYS B 52 51.20 -111.70 REMARK 500 ASP B 92 -152.94 -98.69 REMARK 500 CYS B 94 40.17 77.31 REMARK 500 ASP B 266 -178.74 87.04 REMARK 500 ASN B 272 -126.59 -98.21 REMARK 500 GLU B 358 42.19 -100.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 898 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 900 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 901 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 902 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 904 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 905 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A 906 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH B 826 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B 829 DISTANCE = 8.90 ANGSTROMS REMARK 525 HOH B 830 DISTANCE = 8.95 ANGSTROMS DBREF 8K7H A 32 429 UNP P06280 AGAL_HUMAN 32 429 DBREF 8K7H B 32 429 UNP P06280 AGAL_HUMAN 32 429 SEQRES 1 A 398 LEU ASP ASN GLY LEU ALA ARG THR PRO THR MET GLY TRP SEQRES 2 A 398 LEU HIS TRP GLU ARG PHE MET CYS ASN LEU ASP CYS GLN SEQRES 3 A 398 GLU GLU PRO ASP SER CYS ILE SER GLU LYS LEU PHE MET SEQRES 4 A 398 GLU MET ALA GLU LEU MET VAL SER GLU GLY TRP LYS ASP SEQRES 5 A 398 ALA GLY TYR GLU TYR LEU CYS ILE ASP ASP CYS TRP MET SEQRES 6 A 398 ALA PRO GLN ARG ASP SER GLU GLY ARG LEU GLN ALA ASP SEQRES 7 A 398 PRO GLN ARG PHE PRO HIS GLY ILE ARG GLN LEU ALA ASN SEQRES 8 A 398 TYR VAL HIS SER LYS GLY LEU LYS LEU GLY ILE TYR ALA SEQRES 9 A 398 ASP VAL GLY ASN LYS THR CYS ALA GLY PHE PRO GLY SER SEQRES 10 A 398 PHE GLY TYR TYR ASP ILE ASP ALA GLN THR PHE ALA ASP SEQRES 11 A 398 TRP GLY VAL ASP LEU LEU LYS PHE ASP GLY CYS TYR CYS SEQRES 12 A 398 ASP SER LEU GLU ASN LEU ALA ASP GLY TYR LYS HIS MET SEQRES 13 A 398 SER LEU ALA LEU ASN ARG THR GLY ARG SER ILE VAL TYR SEQRES 14 A 398 SER CYS GLU TRP PRO LEU TYR MET TRP PRO PHE GLN LYS SEQRES 15 A 398 PRO ASN TYR THR GLU ILE ARG GLN TYR CYS ASN HIS TRP SEQRES 16 A 398 ARG ASN PHE ALA ASP ILE ASP ASP SER TRP LYS SER ILE SEQRES 17 A 398 LYS SER ILE LEU ASP TRP THR SER PHE ASN GLN GLU ARG SEQRES 18 A 398 ILE VAL ASP VAL ALA GLY PRO GLY GLY TRP ASN ASP PRO SEQRES 19 A 398 ASP MET LEU VAL ILE GLY ASN PHE GLY LEU SER TRP ASN SEQRES 20 A 398 GLN GLN VAL THR GLN MET ALA LEU TRP ALA ILE MET ALA SEQRES 21 A 398 ALA PRO LEU PHE MET SER ASN ASP LEU ARG HIS ILE SER SEQRES 22 A 398 PRO GLN ALA LYS ALA LEU LEU GLN ASP LYS ASP VAL ILE SEQRES 23 A 398 ALA ILE ASN GLN ASP PRO LEU GLY LYS GLN GLY TYR GLN SEQRES 24 A 398 LEU ARG GLN GLY ASP ASN PHE GLU VAL TRP GLU ARG PRO SEQRES 25 A 398 LEU SER GLY LEU ALA TRP ALA VAL ALA MET ILE ASN ARG SEQRES 26 A 398 GLN GLU ILE GLY GLY PRO ARG SER TYR THR ILE ALA VAL SEQRES 27 A 398 ALA SER LEU GLY LYS GLY VAL ALA CYS ASN PRO ALA CYS SEQRES 28 A 398 PHE ILE THR GLN LEU LEU PRO VAL LYS ARG LYS LEU GLY SEQRES 29 A 398 PHE TYR GLU TRP THR SER ARG LEU ARG SER HIS ILE ASN SEQRES 30 A 398 PRO THR GLY THR VAL LEU LEU GLN LEU GLU ASN THR MET SEQRES 31 A 398 GLN MET SER LEU LYS ASP LEU LEU SEQRES 1 B 398 LEU ASP ASN GLY LEU ALA ARG THR PRO THR MET GLY TRP SEQRES 2 B 398 LEU HIS TRP GLU ARG PHE MET CYS ASN LEU ASP CYS GLN SEQRES 3 B 398 GLU GLU PRO ASP SER CYS ILE SER GLU LYS LEU PHE MET SEQRES 4 B 398 GLU MET ALA GLU LEU MET VAL SER GLU GLY TRP LYS ASP SEQRES 5 B 398 ALA GLY TYR GLU TYR LEU CYS ILE ASP ASP CYS TRP MET SEQRES 6 B 398 ALA PRO GLN ARG ASP SER GLU GLY ARG LEU GLN ALA ASP SEQRES 7 B 398 PRO GLN ARG PHE PRO HIS GLY ILE ARG GLN LEU ALA ASN SEQRES 8 B 398 TYR VAL HIS SER LYS GLY LEU LYS LEU GLY ILE TYR ALA SEQRES 9 B 398 ASP VAL GLY ASN LYS THR CYS ALA GLY PHE PRO GLY SER SEQRES 10 B 398 PHE GLY TYR TYR ASP ILE ASP ALA GLN THR PHE ALA ASP SEQRES 11 B 398 TRP GLY VAL ASP LEU LEU LYS PHE ASP GLY CYS TYR CYS SEQRES 12 B 398 ASP SER LEU GLU ASN LEU ALA ASP GLY TYR LYS HIS MET SEQRES 13 B 398 SER LEU ALA LEU ASN ARG THR GLY ARG SER ILE VAL TYR SEQRES 14 B 398 SER CYS GLU TRP PRO LEU TYR MET TRP PRO PHE GLN LYS SEQRES 15 B 398 PRO ASN TYR THR GLU ILE ARG GLN TYR CYS ASN HIS TRP SEQRES 16 B 398 ARG ASN PHE ALA ASP ILE ASP ASP SER TRP LYS SER ILE SEQRES 17 B 398 LYS SER ILE LEU ASP TRP THR SER PHE ASN GLN GLU ARG SEQRES 18 B 398 ILE VAL ASP VAL ALA GLY PRO GLY GLY TRP ASN ASP PRO SEQRES 19 B 398 ASP MET LEU VAL ILE GLY ASN PHE GLY LEU SER TRP ASN SEQRES 20 B 398 GLN GLN VAL THR GLN MET ALA LEU TRP ALA ILE MET ALA SEQRES 21 B 398 ALA PRO LEU PHE MET SER ASN ASP LEU ARG HIS ILE SER SEQRES 22 B 398 PRO GLN ALA LYS ALA LEU LEU GLN ASP LYS ASP VAL ILE SEQRES 23 B 398 ALA ILE ASN GLN ASP PRO LEU GLY LYS GLN GLY TYR GLN SEQRES 24 B 398 LEU ARG GLN GLY ASP ASN PHE GLU VAL TRP GLU ARG PRO SEQRES 25 B 398 LEU SER GLY LEU ALA TRP ALA VAL ALA MET ILE ASN ARG SEQRES 26 B 398 GLN GLU ILE GLY GLY PRO ARG SER TYR THR ILE ALA VAL SEQRES 27 B 398 ALA SER LEU GLY LYS GLY VAL ALA CYS ASN PRO ALA CYS SEQRES 28 B 398 PHE ILE THR GLN LEU LEU PRO VAL LYS ARG LYS LEU GLY SEQRES 29 B 398 PHE TYR GLU TRP THR SER ARG LEU ARG SER HIS ILE ASN SEQRES 30 B 398 PRO THR GLY THR VAL LEU LEU GLN LEU GLU ASN THR MET SEQRES 31 B 398 GLN MET SER LEU LYS ASP LEU LEU HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG A 501 14 HET VMO A 502 10 HET SO4 A 503 5 HET NAG B 501 14 HET NAG B 502 14 HET VMO B 503 10 HET SO4 B 504 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM VMO (2~{R},3~{S},4~{R})-2-(HYDROXYMETHYL)-1-METHYL- HETNAM 2 VMO PYRROLIDINE-3,4-DIOL HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 5 MAN C6 H12 O6 FORMUL 7 VMO 2(C6 H13 N O3) FORMUL 8 SO4 2(O4 S 2-) FORMUL 13 HOH *540(H2 O) HELIX 1 AA1 HIS A 46 MET A 51 1 6 HELIX 2 AA2 SER A 65 GLU A 79 1 15 HELIX 3 AA3 GLY A 80 GLY A 85 1 6 HELIX 4 AA4 HIS A 115 LYS A 127 1 13 HELIX 5 AA5 TYR A 151 GLY A 163 1 13 HELIX 6 AA6 SER A 176 GLY A 195 1 20 HELIX 7 AA7 GLU A 203 TRP A 209 1 7 HELIX 8 AA8 ASN A 215 CYS A 223 1 9 HELIX 9 AA9 SER A 235 ASN A 249 1 15 HELIX 10 AB1 ASN A 249 VAL A 254 1 6 HELIX 11 AB2 SER A 276 MET A 290 1 15 HELIX 12 AB3 SER A 304 GLN A 312 1 9 HELIX 13 AB4 ASP A 313 GLN A 321 1 9 HELIX 14 AB5 ALA A 370 VAL A 376 5 7 HELIX 15 AB6 HIS B 46 MET B 51 1 6 HELIX 16 AB7 SER B 65 GLU B 79 1 15 HELIX 17 AB8 GLY B 80 GLY B 85 1 6 HELIX 18 AB9 HIS B 115 LYS B 127 1 13 HELIX 19 AC1 TYR B 151 GLY B 163 1 13 HELIX 20 AC2 SER B 176 THR B 194 1 19 HELIX 21 AC3 GLU B 203 TRP B 209 1 7 HELIX 22 AC4 ASN B 215 CYS B 223 1 9 HELIX 23 AC5 SER B 235 ASN B 249 1 15 HELIX 24 AC6 ASN B 249 VAL B 254 1 6 HELIX 25 AC7 SER B 276 MET B 290 1 15 HELIX 26 AC8 SER B 304 GLN B 312 1 9 HELIX 27 AC9 ASP B 313 GLN B 321 1 9 HELIX 28 AD1 ALA B 370 VAL B 376 5 7 SHEET 1 AA1 8 TRP A 262 ASP A 264 0 SHEET 2 AA1 8 HIS A 225 ARG A 227 1 N TRP A 226 O ASP A 264 SHEET 3 AA1 8 VAL A 199 CYS A 202 1 N CYS A 202 O HIS A 225 SHEET 4 AA1 8 LEU A 166 ASP A 170 1 N LEU A 167 O SER A 201 SHEET 5 AA1 8 LYS A 130 ASP A 136 1 N ALA A 135 O ASP A 170 SHEET 6 AA1 8 TYR A 88 CYS A 90 1 N LEU A 89 O LYS A 130 SHEET 7 AA1 8 MET A 42 LEU A 45 1 N TRP A 44 O CYS A 90 SHEET 8 AA1 8 LEU A 294 MET A 296 1 O MET A 296 N LEU A 45 SHEET 1 AA2 6 TYR A 329 GLY A 334 0 SHEET 2 AA2 6 PHE A 337 PRO A 343 -1 O GLU A 341 N TYR A 329 SHEET 3 AA2 6 ALA A 348 ASN A 355 -1 O ALA A 352 N TRP A 340 SHEET 4 AA2 6 THR A 412 ASN A 419 -1 O LEU A 417 N TRP A 349 SHEET 5 AA2 6 ALA A 381 LEU A 388 -1 N LEU A 387 O LEU A 414 SHEET 6 AA2 6 ARG A 392 GLU A 398 -1 O TYR A 397 N CYS A 382 SHEET 1 AA3 2 ARG A 363 ALA A 368 0 SHEET 2 AA3 2 ARG A 402 ILE A 407 -1 O LEU A 403 N ILE A 367 SHEET 1 AA4 8 TRP B 262 ASP B 264 0 SHEET 2 AA4 8 HIS B 225 ARG B 227 1 N TRP B 226 O ASP B 264 SHEET 3 AA4 8 VAL B 199 CYS B 202 1 N CYS B 202 O HIS B 225 SHEET 4 AA4 8 LEU B 166 ASP B 170 1 N LEU B 167 O SER B 201 SHEET 5 AA4 8 LYS B 130 ASP B 136 1 N ALA B 135 O ASP B 170 SHEET 6 AA4 8 TYR B 88 CYS B 90 1 N LEU B 89 O LYS B 130 SHEET 7 AA4 8 MET B 42 LEU B 45 1 N TRP B 44 O CYS B 90 SHEET 8 AA4 8 LEU B 294 MET B 296 1 O MET B 296 N LEU B 45 SHEET 1 AA5 6 TYR B 329 GLY B 334 0 SHEET 2 AA5 6 PHE B 337 LEU B 344 -1 O VAL B 339 N ARG B 332 SHEET 3 AA5 6 ALA B 348 ASN B 355 -1 O ALA B 348 N LEU B 344 SHEET 4 AA5 6 THR B 412 THR B 420 -1 O LEU B 417 N TRP B 349 SHEET 5 AA5 6 ALA B 381 LEU B 388 -1 N LEU B 387 O LEU B 414 SHEET 6 AA5 6 ARG B 392 GLU B 398 -1 O TYR B 397 N CYS B 382 SHEET 1 AA6 2 ARG B 363 ALA B 368 0 SHEET 2 AA6 2 ARG B 402 ILE B 407 -1 O LEU B 403 N ILE B 367 SSBOND 1 CYS A 52 CYS A 94 1555 1555 2.03 SSBOND 2 CYS A 56 CYS A 63 1555 1555 2.04 SSBOND 3 CYS A 142 CYS A 172 1555 1555 2.03 SSBOND 4 CYS A 202 CYS A 223 1555 1555 2.05 SSBOND 5 CYS A 378 CYS A 382 1555 1555 2.04 SSBOND 6 CYS B 52 CYS B 94 1555 1555 2.03 SSBOND 7 CYS B 56 CYS B 63 1555 1555 2.04 SSBOND 8 CYS B 142 CYS B 172 1555 1555 2.03 SSBOND 9 CYS B 202 CYS B 223 1555 1555 2.03 SSBOND 10 CYS B 378 CYS B 382 1555 1555 2.04 LINK ND2 ASN A 139 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 192 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 215 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 139 C1 NAG B 501 1555 1555 1.45 LINK ND2 ASN B 192 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN B 215 C1 NAG B 502 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.45 CISPEP 1 ASN A 379 PRO A 380 0 6.45 CISPEP 2 LEU A 388 PRO A 389 0 -0.59 CISPEP 3 ASN B 379 PRO B 380 0 5.81 CISPEP 4 LEU B 388 PRO B 389 0 0.38 CRYST1 90.513 90.513 216.346 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011048 0.006379 0.000000 0.00000 SCALE2 0.000000 0.012757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004622 0.00000 MTRIX1 1 -0.975231 0.217692 0.039177 -88.48525 1 MTRIX2 1 0.217051 0.907755 0.358985 19.05118 1 MTRIX3 1 0.042585 0.358596 -0.932521 -48.82686 1