HEADER HYDROLASE 27-JUL-23 8K7Q TITLE STAPHYLOCOCCUS AUREUS LIPASE S116A INACTIVE MUTANT-PSA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: E68Q WAS GENETIC VARIANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: LIP, BN1321_80040; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPASE INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KITADOKORO,S.KAMITANI,K.KITADOKORO REVDAT 2 19-JUN-24 8K7Q 1 JRNL REVDAT 1 05-JUN-24 8K7Q 0 JRNL AUTH J.KITADOKORO,S.KAMITANI,Y.OKUNO,T.HIKIMA,M.YAMAMOTO, JRNL AUTH 2 T.HIROKAWA,K.KITADOKORO JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS LIPASE COMPLEX JRNL TITL 2 WITH UNSATURATED PETROSELINIC ACID. JRNL REF FEBS OPEN BIO V. 14 942 2024 JRNL REFN ESSN 2211-5463 JRNL PMID 38757397 JRNL DOI 10.1002/2211-5463.13808 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 135329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9761 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 514 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 209 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -3.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6382 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8583 ; 1.646 ; 1.670 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 6.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;12.199 ; 5.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 994 ;17.861 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 878 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4962 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3063 ; 4.575 ; 5.544 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3818 ; 5.861 ; 9.915 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3319 ; 7.371 ; 5.952 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9697 ; 9.614 ;58.830 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8K7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1300039360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 272631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.090 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.72 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.45M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE PH4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.92550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.46275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 187.38825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.92550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 187.38825 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.46275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ASN A -12 REMARK 465 HIS A -11 REMARK 465 LYS A -10 REMARK 465 VAL A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 LYS A -1 REMARK 465 ALA A 0 REMARK 465 ASN A 1 REMARK 465 GLN A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 386 REMARK 465 LYS A 387 REMARK 465 GLY A 388 REMARK 465 THR A 389 REMARK 465 GLN A 390 REMARK 465 LEU A 391 REMARK 465 LYS A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 MET B -13 REMARK 465 ASN B -12 REMARK 465 HIS B -11 REMARK 465 LYS B -10 REMARK 465 VAL B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 LYS B -1 REMARK 465 ALA B 0 REMARK 465 ASN B 1 REMARK 465 GLN B 2 REMARK 465 VAL B 3 REMARK 465 GLY B 386 REMARK 465 LYS B 387 REMARK 465 GLY B 388 REMARK 465 THR B 389 REMARK 465 GLN B 390 REMARK 465 LEU B 391 REMARK 465 LYS B 392 REMARK 465 ALA B 393 REMARK 465 SER B 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -12.75 80.35 REMARK 500 TYR A 29 148.50 -173.24 REMARK 500 ALA A 116 -128.68 58.62 REMARK 500 PHE A 178 -66.02 -145.16 REMARK 500 SER A 269 27.86 -146.24 REMARK 500 VAL A 309 -11.27 -141.38 REMARK 500 ALA A 332 66.16 -108.89 REMARK 500 LEU B 18 -15.33 81.98 REMARK 500 TYR B 29 146.68 -173.86 REMARK 500 ALA B 116 -125.93 56.87 REMARK 500 PHE B 178 -66.09 -144.03 REMARK 500 SER B 269 27.42 -147.29 REMARK 500 VAL B 309 -10.62 -140.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 225 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 415 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 O REMARK 620 2 HOH A 553 O 63.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 416 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 236 OD2 130.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 283 O REMARK 620 2 ASP A 348 OD2 87.6 REMARK 620 3 ASP A 351 OD1 162.0 101.1 REMARK 620 4 ASP A 351 OD2 145.5 86.2 51.7 REMARK 620 5 ASP A 356 OD2 79.0 83.9 86.3 133.7 REMARK 620 6 ASP A 359 OD2 80.4 165.4 92.7 99.0 101.9 REMARK 620 7 HOH A 598 O 73.1 80.9 123.6 72.5 148.6 87.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 417 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 64 OD1 REMARK 620 2 ASP B 236 OD2 129.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 418 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 283 O REMARK 620 2 ASP B 348 OD2 89.1 REMARK 620 3 ASP B 351 OD1 160.7 100.9 REMARK 620 4 ASP B 351 OD2 147.0 86.7 51.1 REMARK 620 5 ASP B 356 OD2 79.1 83.9 85.6 132.7 REMARK 620 6 ASP B 359 OD2 80.3 166.7 91.6 97.9 101.6 REMARK 620 7 HOH B 523 O 78.2 86.9 118.5 69.0 155.5 83.2 REMARK 620 N 1 2 3 4 5 6 DBREF1 8K7Q A -1 394 UNP A0A0U1MWF9_STAAU DBREF2 8K7Q A A0A0U1MWF9 295 690 DBREF1 8K7Q B -1 394 UNP A0A0U1MWF9_STAAU DBREF2 8K7Q B A0A0U1MWF9 295 690 SEQADV 8K7Q MET A -13 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q ASN A -12 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -11 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q LYS A -10 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q VAL A -9 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -8 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -7 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -6 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -5 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -4 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS A -3 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q MET A -2 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q GLN A 68 UNP A0A0U1MWF GLU 364 CONFLICT SEQADV 8K7Q ALA A 116 UNP A0A0U1MWF SER 412 ENGINEERED MUTATION SEQADV 8K7Q MET B -13 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q ASN B -12 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -11 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q LYS B -10 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q VAL B -9 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -8 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -7 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -6 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -5 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -4 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q HIS B -3 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q MET B -2 UNP A0A0U1MWF EXPRESSION TAG SEQADV 8K7Q GLN B 68 UNP A0A0U1MWF GLU 364 CONFLICT SEQADV 8K7Q ALA B 116 UNP A0A0U1MWF SER 412 ENGINEERED MUTATION SEQRES 1 A 408 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS MET LYS SEQRES 2 A 408 ALA ASN GLN VAL GLN PRO LEU ASN LYS TYR PRO VAL VAL SEQRES 3 A 408 PHE VAL HIS GLY PHE LEU GLY LEU VAL GLY ASP ASN ALA SEQRES 4 A 408 PRO ALA LEU TYR PRO ASN TYR TRP GLY GLY ASN LYS PHE SEQRES 5 A 408 LYS VAL ILE GLU GLU LEU ARG LYS GLN GLY TYR ASN VAL SEQRES 6 A 408 HIS GLN ALA SER VAL SER ALA PHE GLY SER ASN TYR ASP SEQRES 7 A 408 ARG ALA VAL GLN LEU TYR TYR TYR ILE LYS GLY GLY ARG SEQRES 8 A 408 VAL ASP TYR GLY ALA ALA HIS ALA ALA LYS TYR GLY HIS SEQRES 9 A 408 GLU ARG TYR GLY LYS THR TYR LYS GLY ILE MET PRO ASN SEQRES 10 A 408 TRP GLU PRO GLY LYS LYS VAL HIS LEU VAL GLY HIS ALA SEQRES 11 A 408 MET GLY GLY GLN THR ILE ARG LEU MET GLU GLU PHE LEU SEQRES 12 A 408 ARG ASN GLY ASN LYS GLU GLU ILE ALA TYR HIS GLN ALA SEQRES 13 A 408 HIS GLY GLY GLU ILE SER PRO LEU PHE THR GLY GLY HIS SEQRES 14 A 408 ASN ASN MET VAL ALA SER ILE THR THR LEU ALA THR PRO SEQRES 15 A 408 HIS ASN GLY SER GLN ALA ALA ASP LYS PHE GLY ASN THR SEQRES 16 A 408 GLU ALA VAL ARG LYS ILE MET PHE ALA LEU ASN ARG PHE SEQRES 17 A 408 MET GLY ASN LYS TYR SER ASN ILE ASP LEU GLY LEU THR SEQRES 18 A 408 GLN TRP GLY PHE LYS GLN LEU PRO ASN GLU SER TYR ILE SEQRES 19 A 408 ASP TYR ILE LYS ARG VAL SER LYS SER LYS ILE TRP THR SEQRES 20 A 408 SER ASP ASP ASN ALA ALA TYR ASP LEU THR LEU ASP GLY SEQRES 21 A 408 SER ALA LYS LEU ASN ASN MET THR SER MET ASN PRO ASN SEQRES 22 A 408 ILE THR TYR THR THR TYR THR GLY VAL SER SER HIS THR SEQRES 23 A 408 GLY PRO LEU GLY TYR GLU ASN PRO ASP LEU GLY THR PHE SEQRES 24 A 408 PHE LEU MET ASP THR THR SER ARG ILE ILE GLY HIS ASP SEQRES 25 A 408 ALA ARG GLU GLU TRP ARG LYS ASN ASP GLY VAL VAL PRO SEQRES 26 A 408 VAL ILE SER SER LEU HIS PRO SER ASN GLN PRO PHE VAL SEQRES 27 A 408 ASN VAL THR ASN ASN GLU PRO ALA THR ARG ARG GLY ILE SEQRES 28 A 408 TRP GLN VAL LYS PRO ILE LEU GLN GLY TRP ASP HIS VAL SEQRES 29 A 408 ASP PHE ILE GLY VAL ASP PHE LEU ASP PHE LYS ARG LYS SEQRES 30 A 408 GLY SER GLU LEU ALA ASN PHE TYR ILE GLY ILE ILE ASN SEQRES 31 A 408 ASP LEU LEU SER VAL GLU ALA THR GLU GLY LYS GLY THR SEQRES 32 A 408 GLN LEU LYS ALA SER SEQRES 1 B 408 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS MET LYS SEQRES 2 B 408 ALA ASN GLN VAL GLN PRO LEU ASN LYS TYR PRO VAL VAL SEQRES 3 B 408 PHE VAL HIS GLY PHE LEU GLY LEU VAL GLY ASP ASN ALA SEQRES 4 B 408 PRO ALA LEU TYR PRO ASN TYR TRP GLY GLY ASN LYS PHE SEQRES 5 B 408 LYS VAL ILE GLU GLU LEU ARG LYS GLN GLY TYR ASN VAL SEQRES 6 B 408 HIS GLN ALA SER VAL SER ALA PHE GLY SER ASN TYR ASP SEQRES 7 B 408 ARG ALA VAL GLN LEU TYR TYR TYR ILE LYS GLY GLY ARG SEQRES 8 B 408 VAL ASP TYR GLY ALA ALA HIS ALA ALA LYS TYR GLY HIS SEQRES 9 B 408 GLU ARG TYR GLY LYS THR TYR LYS GLY ILE MET PRO ASN SEQRES 10 B 408 TRP GLU PRO GLY LYS LYS VAL HIS LEU VAL GLY HIS ALA SEQRES 11 B 408 MET GLY GLY GLN THR ILE ARG LEU MET GLU GLU PHE LEU SEQRES 12 B 408 ARG ASN GLY ASN LYS GLU GLU ILE ALA TYR HIS GLN ALA SEQRES 13 B 408 HIS GLY GLY GLU ILE SER PRO LEU PHE THR GLY GLY HIS SEQRES 14 B 408 ASN ASN MET VAL ALA SER ILE THR THR LEU ALA THR PRO SEQRES 15 B 408 HIS ASN GLY SER GLN ALA ALA ASP LYS PHE GLY ASN THR SEQRES 16 B 408 GLU ALA VAL ARG LYS ILE MET PHE ALA LEU ASN ARG PHE SEQRES 17 B 408 MET GLY ASN LYS TYR SER ASN ILE ASP LEU GLY LEU THR SEQRES 18 B 408 GLN TRP GLY PHE LYS GLN LEU PRO ASN GLU SER TYR ILE SEQRES 19 B 408 ASP TYR ILE LYS ARG VAL SER LYS SER LYS ILE TRP THR SEQRES 20 B 408 SER ASP ASP ASN ALA ALA TYR ASP LEU THR LEU ASP GLY SEQRES 21 B 408 SER ALA LYS LEU ASN ASN MET THR SER MET ASN PRO ASN SEQRES 22 B 408 ILE THR TYR THR THR TYR THR GLY VAL SER SER HIS THR SEQRES 23 B 408 GLY PRO LEU GLY TYR GLU ASN PRO ASP LEU GLY THR PHE SEQRES 24 B 408 PHE LEU MET ASP THR THR SER ARG ILE ILE GLY HIS ASP SEQRES 25 B 408 ALA ARG GLU GLU TRP ARG LYS ASN ASP GLY VAL VAL PRO SEQRES 26 B 408 VAL ILE SER SER LEU HIS PRO SER ASN GLN PRO PHE VAL SEQRES 27 B 408 ASN VAL THR ASN ASN GLU PRO ALA THR ARG ARG GLY ILE SEQRES 28 B 408 TRP GLN VAL LYS PRO ILE LEU GLN GLY TRP ASP HIS VAL SEQRES 29 B 408 ASP PHE ILE GLY VAL ASP PHE LEU ASP PHE LYS ARG LYS SEQRES 30 B 408 GLY SER GLU LEU ALA ASN PHE TYR ILE GLY ILE ILE ASN SEQRES 31 B 408 ASP LEU LEU SER VAL GLU ALA THR GLU GLY LYS GLY THR SEQRES 32 B 408 GLN LEU LYS ALA SER HET FMT A 401 3 HET OCA A 402 10 HET OCA A 403 10 HET PPI A 404 5 HET ACY A 405 4 HET 4I1 A 406 20 HET DAO A 407 14 HET 6NA A 408 8 HET FMT A 409 3 HET FMT A 410 3 HET FMT A 411 3 HET FMT A 412 3 HET CL A 413 1 HET CL A 414 1 HET MG A 415 1 HET ZN A 416 1 HET CA A 417 1 HET GOL A 418 6 HET 6NA B 401 8 HET FMT B 402 3 HET FMT B 403 3 HET 6NA B 404 8 HET BUA B 405 6 HET OCA B 406 10 HET OCA B 407 10 HET 4I1 B 408 20 HET FMT B 409 3 HET FMT B 410 3 HET FMT B 411 3 HET FMT B 412 3 HET DAO B 413 14 HET 6NA B 414 8 HET CL B 415 1 HET CL B 416 1 HET ZN B 417 1 HET CA B 418 1 HET GOL B 419 6 HETNAM FMT FORMIC ACID HETNAM OCA OCTANOIC ACID (CAPRYLIC ACID) HETNAM PPI PROPANOIC ACID HETNAM ACY ACETIC ACID HETNAM 4I1 PETROSELINIC ACID HETNAM DAO LAURIC ACID HETNAM 6NA HEXANOIC ACID HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM BUA BUTANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMT 11(C H2 O2) FORMUL 4 OCA 4(C8 H16 O2) FORMUL 6 PPI C3 H6 O2 FORMUL 7 ACY C2 H4 O2 FORMUL 8 4I1 2(C18 H34 O2) FORMUL 9 DAO 2(C12 H24 O2) FORMUL 10 6NA 4(C6 H12 O2) FORMUL 15 CL 4(CL 1-) FORMUL 17 MG MG 2+ FORMUL 18 ZN 2(ZN 2+) FORMUL 19 CA 2(CA 2+) FORMUL 20 GOL 2(C3 H8 O3) FORMUL 25 BUA C4 H8 O2 FORMUL 40 HOH *211(H2 O) HELIX 1 AA1 VAL A 21 ALA A 25 5 5 HELIX 2 AA2 LYS A 39 GLN A 47 1 9 HELIX 3 AA3 SER A 61 GLY A 75 1 15 HELIX 4 AA4 GLY A 81 GLY A 89 1 9 HELIX 5 AA5 ALA A 116 GLY A 132 1 17 HELIX 6 AA6 ASN A 133 GLY A 144 1 12 HELIX 7 AA7 SER A 148 THR A 152 5 5 HELIX 8 AA8 SER A 172 LYS A 177 1 6 HELIX 9 AA9 THR A 181 MET A 195 1 15 HELIX 10 AB1 LEU A 206 GLY A 210 5 5 HELIX 11 AB2 SER A 218 SER A 227 1 10 HELIX 12 AB3 LYS A 228 SER A 234 5 7 HELIX 13 AB4 ASN A 237 LEU A 242 1 6 HELIX 14 AB5 THR A 243 MET A 253 1 11 HELIX 15 AB6 PHE A 285 LEU A 287 5 3 HELIX 16 AB7 MET A 288 HIS A 297 1 10 HELIX 17 AB8 ARG A 300 ARG A 304 5 5 HELIX 18 AB9 PRO A 311 LEU A 316 1 6 HELIX 19 AC1 VAL A 350 GLY A 354 5 5 HELIX 20 AC2 LYS A 363 THR A 384 1 22 HELIX 21 AC3 VAL B 21 ALA B 25 5 5 HELIX 22 AC4 LYS B 39 GLN B 47 1 9 HELIX 23 AC5 SER B 61 GLY B 75 1 15 HELIX 24 AC6 GLY B 81 GLY B 89 1 9 HELIX 25 AC7 ALA B 116 GLY B 132 1 17 HELIX 26 AC8 ASN B 133 GLY B 144 1 12 HELIX 27 AC9 SER B 148 GLY B 153 1 6 HELIX 28 AD1 SER B 172 LYS B 177 1 6 HELIX 29 AD2 THR B 181 GLY B 196 1 16 HELIX 30 AD3 LEU B 206 GLY B 210 5 5 HELIX 31 AD4 SER B 218 SER B 227 1 10 HELIX 32 AD5 LYS B 228 SER B 234 5 7 HELIX 33 AD6 ASN B 237 LEU B 242 1 6 HELIX 34 AD7 THR B 243 THR B 254 1 12 HELIX 35 AD8 PHE B 285 LEU B 287 5 3 HELIX 36 AD9 MET B 288 HIS B 297 1 10 HELIX 37 AE1 ARG B 300 ARG B 304 5 5 HELIX 38 AE2 PRO B 311 LEU B 316 1 6 HELIX 39 AE3 VAL B 350 GLY B 354 5 5 HELIX 40 AE4 LYS B 363 THR B 384 1 22 SHEET 1 AA1 7 VAL A 51 GLN A 53 0 SHEET 2 AA1 7 VAL A 11 VAL A 14 1 N PHE A 13 O HIS A 52 SHEET 3 AA1 7 VAL A 110 HIS A 115 1 O VAL A 113 N VAL A 14 SHEET 4 AA1 7 VAL A 159 LEU A 165 1 O THR A 163 N GLY A 114 SHEET 5 AA1 7 THR A 261 TYR A 265 1 O THR A 261 N ILE A 162 SHEET 6 AA1 7 TRP A 338 VAL A 340 1 O GLN A 339 N THR A 264 SHEET 7 AA1 7 PHE A 323 ASN A 325 1 N VAL A 324 O TRP A 338 SHEET 1 AA2 2 GLY A 76 ASP A 79 0 SHEET 2 AA2 2 TYR A 93 TYR A 97 -1 O TYR A 97 N GLY A 76 SHEET 1 AA3 2 GLY A 267 VAL A 268 0 SHEET 2 AA3 2 LEU A 344 GLN A 345 1 O LEU A 344 N VAL A 268 SHEET 1 AA4 2 SER A 270 THR A 272 0 SHEET 2 AA4 2 GLU A 278 PRO A 280 -1 O ASN A 279 N HIS A 271 SHEET 1 AA5 7 VAL B 51 GLN B 53 0 SHEET 2 AA5 7 VAL B 11 VAL B 14 1 N PHE B 13 O HIS B 52 SHEET 3 AA5 7 VAL B 110 HIS B 115 1 O HIS B 111 N VAL B 12 SHEET 4 AA5 7 VAL B 159 LEU B 165 1 O THR B 163 N GLY B 114 SHEET 5 AA5 7 THR B 261 TYR B 265 1 O THR B 261 N ILE B 162 SHEET 6 AA5 7 TRP B 338 VAL B 340 1 O GLN B 339 N THR B 264 SHEET 7 AA5 7 PHE B 323 ASN B 325 1 N VAL B 324 O TRP B 338 SHEET 1 AA6 2 GLY B 76 ASP B 79 0 SHEET 2 AA6 2 TYR B 93 TYR B 97 -1 O TYR B 97 N GLY B 76 SHEET 1 AA7 2 GLY B 267 VAL B 268 0 SHEET 2 AA7 2 LEU B 344 GLN B 345 1 O LEU B 344 N VAL B 268 SHEET 1 AA8 2 SER B 270 THR B 272 0 SHEET 2 AA8 2 GLU B 278 PRO B 280 -1 O ASN B 279 N HIS B 271 LINK O ASP A 23 MG MG A 415 1555 1555 2.80 LINK OD1 ASP A 64 ZN ZN A 416 1555 1555 2.06 LINK OD2 ASP A 236 ZN ZN A 416 1555 1555 1.91 LINK O GLY A 283 CA CA A 417 1555 1555 2.32 LINK OD2 ASP A 348 CA CA A 417 1555 1555 2.41 LINK OD1 ASP A 351 CA CA A 417 1555 1555 2.65 LINK OD2 ASP A 351 CA CA A 417 1555 1555 2.40 LINK OD2 ASP A 356 CA CA A 417 1555 1555 2.41 LINK OD2 ASP A 359 CA CA A 417 1555 1555 2.35 LINK MG MG A 415 O HOH A 553 1555 1555 2.43 LINK CA CA A 417 O HOH A 598 1555 1555 2.52 LINK OD1 ASP B 64 ZN ZN B 417 1555 1555 2.06 LINK OD2 ASP B 236 ZN ZN B 417 1555 1555 1.93 LINK O GLY B 283 CA CA B 418 1555 1555 2.32 LINK OD2 ASP B 348 CA CA B 418 1555 1555 2.37 LINK OD1 ASP B 351 CA CA B 418 1555 1555 2.70 LINK OD2 ASP B 351 CA CA B 418 1555 1555 2.42 LINK OD2 ASP B 356 CA CA B 418 1555 1555 2.40 LINK OD2 ASP B 359 CA CA B 418 1555 1555 2.39 LINK CA CA B 418 O HOH B 523 1555 1555 2.47 CRYST1 131.348 131.348 249.851 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004002 0.00000