HEADER LIGASE 01-AUG-23 8K9U TITLE CRYSTAL STRUCTURE OF PLASMODIUM LYSRS COMPLEXING WITH ASP3026 DERIVED TITLE 2 LYSRS INHIBITOR 2 (ADKI2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSYL-TRNA SYNTHETASE; COMPND 5 EC: 6.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE CAMP / SOURCE 3 MALAYSIA); SOURCE 4 ORGANISM_TAXID: 5835; SOURCE 5 GENE: PFMC_04735; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSYL-TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,M.XIA,G.YANG,P.LI,P.FANG REVDAT 3 23-OCT-24 8K9U 1 REMARK REVDAT 2 03-JUL-24 8K9U 1 JRNL REVDAT 1 26-JUN-24 8K9U 0 JRNL AUTH J.ZHOU,M.XIA,Z.HUANG,H.QIAO,G.YANG,Y.QIAN,P.LI,Z.ZHANG, JRNL AUTH 2 X.GAO,L.JIANG,J.WANG,W.LI,P.FANG JRNL TITL STRUCTURE-GUIDED CONVERSION FROM AN ANAPLASTIC LYMPHOMA JRNL TITL 2 KINASE INHIBITOR INTO PLASMODIUM LYSYL-TRNA SYNTHETASE JRNL TITL 3 SELECTIVE INHIBITORS. JRNL REF COMMUN BIOL V. 7 742 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38890421 JRNL DOI 10.1038/S42003-024-06455-4 REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7400 - 5.8900 0.99 2874 148 0.2065 0.2412 REMARK 3 2 5.8800 - 4.6700 1.00 2765 120 0.2104 0.3065 REMARK 3 3 4.6700 - 4.0800 1.00 2701 159 0.1798 0.2282 REMARK 3 4 4.0800 - 3.7100 1.00 2690 155 0.2184 0.2667 REMARK 3 5 3.7100 - 3.4400 1.00 2733 118 0.2309 0.3049 REMARK 3 6 3.4400 - 3.2400 1.00 2717 110 0.2658 0.3355 REMARK 3 7 3.2400 - 3.0800 1.00 2637 152 0.2722 0.3366 REMARK 3 8 3.0800 - 2.9400 1.00 2670 142 0.2986 0.3540 REMARK 3 9 2.9400 - 2.8300 1.00 2676 148 0.3108 0.4023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7827 REMARK 3 ANGLE : 0.731 10625 REMARK 3 CHIRALITY : 0.048 1167 REMARK 3 PLANARITY : 0.005 1380 REMARK 3 DIHEDRAL : 17.515 2854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.9238 -5.9440 -34.5281 REMARK 3 T TENSOR REMARK 3 T11: 0.3773 T22: 0.3713 REMARK 3 T33: 0.5238 T12: 0.0658 REMARK 3 T13: -0.0359 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.3527 L22: 1.0383 REMARK 3 L33: 2.9290 L12: 0.0762 REMARK 3 L13: -0.1617 L23: 0.8589 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.0232 S13: 0.0084 REMARK 3 S21: 0.0354 S22: -0.1214 S23: 0.2199 REMARK 3 S31: -0.0282 S32: -0.0698 S33: 0.1526 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8K9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300039955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978490 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25783 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.20800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 1.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES PH 6.0, PEG4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.85850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.31200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.12850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.31200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.85850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.12850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 76 REMARK 465 GLU A 77 REMARK 465 GLY A 226 REMARK 465 LEU A 227 REMARK 465 LYS A 228 REMARK 465 ASP A 229 REMARK 465 LYS A 519 REMARK 465 LEU A 520 REMARK 465 GLN A 521 REMARK 465 GLN A 522 REMARK 465 LYS A 523 REMARK 465 ASP A 524 REMARK 465 ARG A 525 REMARK 465 GLU A 526 REMARK 465 LYS A 527 REMARK 465 GLY A 528 REMARK 465 ASP A 529 REMARK 465 THR A 530 REMARK 465 GLU A 531 REMARK 465 ALA A 532 REMARK 465 ALA A 533 REMARK 465 ASN A 583 REMARK 465 GLY A 584 REMARK 465 GLY A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 MET B 76 REMARK 465 GLU B 77 REMARK 465 ALA B 144 REMARK 465 SER B 145 REMARK 465 GLY B 146 REMARK 465 GLN B 147 REMARK 465 GLY B 226 REMARK 465 LEU B 227 REMARK 465 LYS B 228 REMARK 465 ASP B 229 REMARK 465 GLY B 283 REMARK 465 GLY B 284 REMARK 465 ALA B 285 REMARK 465 LYS B 519 REMARK 465 LEU B 520 REMARK 465 GLN B 521 REMARK 465 GLN B 522 REMARK 465 LYS B 523 REMARK 465 ASP B 524 REMARK 465 ARG B 525 REMARK 465 GLU B 526 REMARK 465 LYS B 527 REMARK 465 GLY B 528 REMARK 465 ASP B 529 REMARK 465 THR B 530 REMARK 465 GLU B 531 REMARK 465 ALA B 532 REMARK 465 ALA B 533 REMARK 465 GLN B 534 REMARK 465 LEU B 535 REMARK 465 ASN B 583 REMARK 465 GLY B 584 REMARK 465 GLY B 585 REMARK 465 HIS B 586 REMARK 465 HIS B 587 REMARK 465 HIS B 588 REMARK 465 HIS B 589 REMARK 465 HIS B 590 REMARK 465 HIS B 591 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 78 CG1 CG2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 82 CG CD1 CD2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 89 CD CE NZ REMARK 470 ILE A 99 CG1 CG2 CD1 REMARK 470 LYS A 118 CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 SER A 145 OG REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 MET A 223 CG SD CE REMARK 470 TYR A 225 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ASN A 286 CG OD1 ND2 REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 VAL A 410 CG1 CG2 REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 GLU A 434 CD OE1 OE2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 ILE A 437 CG1 CG2 CD1 REMARK 470 ASN A 441 CG OD1 ND2 REMARK 470 LYS A 447 CG CD CE NZ REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 512 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 515 CG CD CE NZ REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 PHE A 518 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 534 CG CD OE1 NE2 REMARK 470 LEU A 535 CG CD1 CD2 REMARK 470 ARG A 580 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 78 CG1 CG2 REMARK 470 ARG B 81 CD NE CZ NH1 NH2 REMARK 470 LYS B 89 CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 ILE B 99 CG1 CG2 CD1 REMARK 470 LYS B 118 CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 LEU B 122 CG CD1 CD2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 HIS B 127 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 151 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 LEU B 164 CG CD1 CD2 REMARK 470 TYR B 167 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 PHE B 177 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 PHE B 195 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 PHE B 207 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 TYR B 225 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 ASN B 286 CG OD1 ND2 REMARK 470 GLU B 386 CG CD OE1 OE2 REMARK 470 GLN B 388 CG CD OE1 NE2 REMARK 470 LYS B 409 CG CD CE NZ REMARK 470 VAL B 410 CG1 CG2 REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 GLU B 434 CD OE1 OE2 REMARK 470 LYS B 436 CG CD CE NZ REMARK 470 ILE B 437 CG1 CG2 CD1 REMARK 470 ASN B 441 CG OD1 ND2 REMARK 470 LYS B 447 CG CD CE NZ REMARK 470 LYS B 515 CG CD CE NZ REMARK 470 GLU B 516 CG CD OE1 OE2 REMARK 470 PHE B 518 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 537 OG1 THR A 541 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 224 21.70 -146.20 REMARK 500 GLU A 332 -167.02 -127.36 REMARK 500 TYR A 351 19.88 58.91 REMARK 500 GLU A 490 36.66 -98.76 REMARK 500 TYR B 167 1.92 -69.70 REMARK 500 SER B 215 113.24 -160.53 REMARK 500 LYS B 224 -60.98 -93.68 REMARK 500 ILE B 243 -61.30 -95.80 REMARK 500 GLU B 245 -8.54 69.34 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8K9U A 77 583 UNP A0A024X378_PLAFC DBREF2 8K9U A A0A024X378 77 583 DBREF1 8K9U B 77 583 UNP A0A024X378_PLAFC DBREF2 8K9U B A0A024X378 77 583 SEQADV 8K9U MET A 76 UNP A0A024X37 INITIATING METHIONINE SEQADV 8K9U GLY A 584 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U GLY A 585 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS A 586 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS A 587 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS A 588 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS A 589 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS A 590 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS A 591 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U MET B 76 UNP A0A024X37 INITIATING METHIONINE SEQADV 8K9U GLY B 584 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U GLY B 585 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS B 586 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS B 587 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS B 588 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS B 589 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS B 590 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9U HIS B 591 UNP A0A024X37 EXPRESSION TAG SEQRES 1 A 516 MET GLU VAL ASP PRO ARG LEU TYR PHE GLU ASN ARG SER SEQRES 2 A 516 LYS PHE ILE GLN ASP GLN LYS ASP LYS GLY ILE ASN PRO SEQRES 3 A 516 TYR PRO HIS LYS PHE GLU ARG THR ILE SER ILE PRO GLU SEQRES 4 A 516 PHE ILE GLU LYS TYR LYS ASP LEU GLY ASN GLY GLU HIS SEQRES 5 A 516 LEU GLU ASP THR ILE LEU ASN ILE THR GLY ARG ILE MET SEQRES 6 A 516 ARG VAL SER ALA SER GLY GLN LYS LEU ARG PHE PHE ASP SEQRES 7 A 516 LEU VAL GLY ASP GLY GLU LYS ILE GLN VAL LEU ALA ASN SEQRES 8 A 516 TYR SER PHE HIS ASN HIS GLU LYS GLY ASN PHE ALA GLU SEQRES 9 A 516 CYS TYR ASP LYS ILE ARG ARG GLY ASP ILE VAL GLY ILE SEQRES 10 A 516 VAL GLY PHE PRO GLY LYS SER LYS LYS GLY GLU LEU SER SEQRES 11 A 516 ILE PHE PRO LYS GLU THR ILE LEU LEU SER ALA CYS LEU SEQRES 12 A 516 HIS MET LEU PRO MET LYS TYR GLY LEU LYS ASP THR GLU SEQRES 13 A 516 ILE ARG TYR ARG GLN ARG TYR LEU ASP LEU LEU ILE ASN SEQRES 14 A 516 GLU SER SER ARG HIS THR PHE VAL THR ARG THR LYS ILE SEQRES 15 A 516 ILE ASN PHE LEU ARG ASN PHE LEU ASN GLU ARG GLY PHE SEQRES 16 A 516 PHE GLU VAL GLU THR PRO MET MET ASN LEU ILE ALA GLY SEQRES 17 A 516 GLY ALA ASN ALA ARG PRO PHE ILE THR HIS HIS ASN ASP SEQRES 18 A 516 LEU ASP LEU ASP LEU TYR LEU ARG ILE ALA THR GLU LEU SEQRES 19 A 516 PRO LEU LYS MET LEU ILE VAL GLY GLY ILE ASP LYS VAL SEQRES 20 A 516 TYR GLU ILE GLY LYS VAL PHE ARG ASN GLU GLY ILE ASP SEQRES 21 A 516 ASN THR HIS ASN PRO GLU PHE THR SER CYS GLU PHE TYR SEQRES 22 A 516 TRP ALA TYR ALA ASP TYR ASN ASP LEU ILE LYS TRP SER SEQRES 23 A 516 GLU ASP PHE PHE SER GLN LEU VAL TYR HIS LEU PHE GLY SEQRES 24 A 516 THR TYR LYS ILE SER TYR ASN LYS ASP GLY PRO GLU ASN SEQRES 25 A 516 GLN PRO ILE GLU ILE ASP PHE THR PRO PRO TYR PRO LYS SEQRES 26 A 516 VAL SER ILE VAL GLU GLU ILE GLU LYS VAL THR ASN THR SEQRES 27 A 516 ILE LEU GLU GLN PRO PHE ASP SER ASN GLU THR ILE GLU SEQRES 28 A 516 LYS MET ILE ASN ILE ILE LYS GLU HIS LYS ILE GLU LEU SEQRES 29 A 516 PRO ASN PRO PRO THR ALA ALA LYS LEU LEU ASP GLN LEU SEQRES 30 A 516 ALA SER HIS PHE ILE GLU ASN LYS TYR ASN ASP LYS PRO SEQRES 31 A 516 PHE PHE ILE VAL GLU HIS PRO GLN ILE MET SER PRO LEU SEQRES 32 A 516 ALA LYS TYR HIS ARG THR LYS PRO GLY LEU THR GLU ARG SEQRES 33 A 516 LEU GLU MET PHE ILE CYS GLY LYS GLU VAL LEU ASN ALA SEQRES 34 A 516 TYR THR GLU LEU ASN ASP PRO PHE LYS GLN LYS GLU CYS SEQRES 35 A 516 PHE LYS LEU GLN GLN LYS ASP ARG GLU LYS GLY ASP THR SEQRES 36 A 516 GLU ALA ALA GLN LEU ASP SER ALA PHE CYS THR SER LEU SEQRES 37 A 516 GLU TYR GLY LEU PRO PRO THR GLY GLY LEU GLY LEU GLY SEQRES 38 A 516 ILE ASP ARG ILE THR MET PHE LEU THR ASN LYS ASN SER SEQRES 39 A 516 ILE LYS ASP VAL ILE LEU PHE PRO THR MET ARG PRO ALA SEQRES 40 A 516 ASN GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 516 MET GLU VAL ASP PRO ARG LEU TYR PHE GLU ASN ARG SER SEQRES 2 B 516 LYS PHE ILE GLN ASP GLN LYS ASP LYS GLY ILE ASN PRO SEQRES 3 B 516 TYR PRO HIS LYS PHE GLU ARG THR ILE SER ILE PRO GLU SEQRES 4 B 516 PHE ILE GLU LYS TYR LYS ASP LEU GLY ASN GLY GLU HIS SEQRES 5 B 516 LEU GLU ASP THR ILE LEU ASN ILE THR GLY ARG ILE MET SEQRES 6 B 516 ARG VAL SER ALA SER GLY GLN LYS LEU ARG PHE PHE ASP SEQRES 7 B 516 LEU VAL GLY ASP GLY GLU LYS ILE GLN VAL LEU ALA ASN SEQRES 8 B 516 TYR SER PHE HIS ASN HIS GLU LYS GLY ASN PHE ALA GLU SEQRES 9 B 516 CYS TYR ASP LYS ILE ARG ARG GLY ASP ILE VAL GLY ILE SEQRES 10 B 516 VAL GLY PHE PRO GLY LYS SER LYS LYS GLY GLU LEU SER SEQRES 11 B 516 ILE PHE PRO LYS GLU THR ILE LEU LEU SER ALA CYS LEU SEQRES 12 B 516 HIS MET LEU PRO MET LYS TYR GLY LEU LYS ASP THR GLU SEQRES 13 B 516 ILE ARG TYR ARG GLN ARG TYR LEU ASP LEU LEU ILE ASN SEQRES 14 B 516 GLU SER SER ARG HIS THR PHE VAL THR ARG THR LYS ILE SEQRES 15 B 516 ILE ASN PHE LEU ARG ASN PHE LEU ASN GLU ARG GLY PHE SEQRES 16 B 516 PHE GLU VAL GLU THR PRO MET MET ASN LEU ILE ALA GLY SEQRES 17 B 516 GLY ALA ASN ALA ARG PRO PHE ILE THR HIS HIS ASN ASP SEQRES 18 B 516 LEU ASP LEU ASP LEU TYR LEU ARG ILE ALA THR GLU LEU SEQRES 19 B 516 PRO LEU LYS MET LEU ILE VAL GLY GLY ILE ASP LYS VAL SEQRES 20 B 516 TYR GLU ILE GLY LYS VAL PHE ARG ASN GLU GLY ILE ASP SEQRES 21 B 516 ASN THR HIS ASN PRO GLU PHE THR SER CYS GLU PHE TYR SEQRES 22 B 516 TRP ALA TYR ALA ASP TYR ASN ASP LEU ILE LYS TRP SER SEQRES 23 B 516 GLU ASP PHE PHE SER GLN LEU VAL TYR HIS LEU PHE GLY SEQRES 24 B 516 THR TYR LYS ILE SER TYR ASN LYS ASP GLY PRO GLU ASN SEQRES 25 B 516 GLN PRO ILE GLU ILE ASP PHE THR PRO PRO TYR PRO LYS SEQRES 26 B 516 VAL SER ILE VAL GLU GLU ILE GLU LYS VAL THR ASN THR SEQRES 27 B 516 ILE LEU GLU GLN PRO PHE ASP SER ASN GLU THR ILE GLU SEQRES 28 B 516 LYS MET ILE ASN ILE ILE LYS GLU HIS LYS ILE GLU LEU SEQRES 29 B 516 PRO ASN PRO PRO THR ALA ALA LYS LEU LEU ASP GLN LEU SEQRES 30 B 516 ALA SER HIS PHE ILE GLU ASN LYS TYR ASN ASP LYS PRO SEQRES 31 B 516 PHE PHE ILE VAL GLU HIS PRO GLN ILE MET SER PRO LEU SEQRES 32 B 516 ALA LYS TYR HIS ARG THR LYS PRO GLY LEU THR GLU ARG SEQRES 33 B 516 LEU GLU MET PHE ILE CYS GLY LYS GLU VAL LEU ASN ALA SEQRES 34 B 516 TYR THR GLU LEU ASN ASP PRO PHE LYS GLN LYS GLU CYS SEQRES 35 B 516 PHE LYS LEU GLN GLN LYS ASP ARG GLU LYS GLY ASP THR SEQRES 36 B 516 GLU ALA ALA GLN LEU ASP SER ALA PHE CYS THR SER LEU SEQRES 37 B 516 GLU TYR GLY LEU PRO PRO THR GLY GLY LEU GLY LEU GLY SEQRES 38 B 516 ILE ASP ARG ILE THR MET PHE LEU THR ASN LYS ASN SER SEQRES 39 B 516 ILE LYS ASP VAL ILE LEU PHE PRO THR MET ARG PRO ALA SEQRES 40 B 516 ASN GLY GLY HIS HIS HIS HIS HIS HIS HET LYS A 601 10 HET JSL A 602 30 HET MES B 601 12 HET LYS B 602 10 HET JSL B 603 30 HETNAM LYS LYSINE HETNAM JSL ~{N}4-(2,4-DIMETHOXYPHENYL)-~{N}2-(2-PROPAN-2- HETNAM 2 JSL YLSULFONYLPHENYL)-1,3,5-TRIAZINE-2,4-DIAMINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 LYS 2(C6 H15 N2 O2 1+) FORMUL 4 JSL 2(C20 H23 N5 O4 S) FORMUL 5 MES C6 H13 N O4 S FORMUL 8 HOH *96(H2 O) HELIX 1 AA1 ASP A 79 LYS A 97 1 19 HELIX 2 AA2 SER A 111 LYS A 120 1 10 HELIX 3 AA3 ASN A 176 LYS A 183 1 8 HELIX 4 AA4 GLU A 231 GLN A 236 1 6 HELIX 5 AA5 GLN A 236 ASN A 244 1 9 HELIX 6 AA6 ASN A 244 ARG A 268 1 25 HELIX 7 AA7 THR A 307 GLY A 317 1 11 HELIX 8 AA8 ASP A 353 GLY A 374 1 22 HELIX 9 AA9 ILE A 403 ASN A 412 1 10 HELIX 10 AB1 SER A 421 HIS A 435 1 15 HELIX 11 AB2 THR A 444 ILE A 457 1 14 HELIX 12 AB3 ASP A 510 GLN A 514 5 5 HELIX 13 AB4 ASP A 536 TYR A 545 1 10 HELIX 14 AB5 ILE A 557 THR A 565 1 9 HELIX 15 AB6 SER A 569 VAL A 573 5 5 HELIX 16 AB7 ASP B 79 LYS B 97 1 19 HELIX 17 AB8 SER B 111 TYR B 119 1 9 HELIX 18 AB9 ASN B 171 GLY B 175 5 5 HELIX 19 AC1 ASN B 176 LYS B 183 1 8 HELIX 20 AC2 GLU B 231 GLN B 236 1 6 HELIX 21 AC3 GLN B 236 ASN B 244 1 9 HELIX 22 AC4 GLU B 245 ARG B 268 1 24 HELIX 23 AC5 THR B 307 GLY B 317 1 11 HELIX 24 AC6 ASP B 353 GLY B 374 1 22 HELIX 25 AC7 ILE B 403 ASN B 412 1 10 HELIX 26 AC8 SER B 421 HIS B 435 1 15 HELIX 27 AC9 THR B 444 ILE B 457 1 14 HELIX 28 AD1 ASP B 510 GLN B 514 5 5 HELIX 29 AD2 SER B 537 LEU B 547 1 11 HELIX 30 AD3 ILE B 557 THR B 565 1 9 HELIX 31 AD4 SER B 569 VAL B 573 5 5 SHEET 1 AA1 6 LEU A 133 ALA A 144 0 SHEET 2 AA1 6 LEU A 149 GLY A 156 -1 O PHE A 151 N SER A 143 SHEET 3 AA1 6 GLU A 159 ASN A 166 -1 O ILE A 161 N LEU A 154 SHEET 4 AA1 6 LEU A 204 SER A 215 1 O LEU A 204 N GLN A 162 SHEET 5 AA1 6 ILE A 189 LYS A 198 -1 N GLY A 191 O ILE A 212 SHEET 6 AA1 6 LEU A 133 ALA A 144 -1 N ILE A 135 O ILE A 192 SHEET 1 AA2 8 PHE A 271 GLU A 272 0 SHEET 2 AA2 8 LYS A 321 PHE A 329 1 O TYR A 323 N PHE A 271 SHEET 3 AA2 8 GLU A 341 ALA A 350 -1 O TYR A 348 N VAL A 322 SHEET 4 AA2 8 THR A 550 GLY A 556 -1 O GLY A 551 N TRP A 349 SHEET 5 AA2 8 LYS A 499 THR A 506 -1 N TYR A 505 O GLY A 552 SHEET 6 AA2 8 LEU A 492 ILE A 496 -1 N LEU A 492 O ALA A 504 SHEET 7 AA2 8 PHE A 466 VAL A 469 -1 N PHE A 466 O PHE A 495 SHEET 8 AA2 8 LYS A 400 SER A 402 1 N VAL A 401 O VAL A 469 SHEET 1 AA3 3 MET A 278 ASN A 279 0 SHEET 2 AA3 3 LEU A 299 LEU A 303 -1 O TYR A 302 N ASN A 279 SHEET 3 AA3 3 ILE A 291 HIS A 294 -1 N HIS A 294 O LEU A 299 SHEET 1 AA4 2 LYS A 377 TYR A 380 0 SHEET 2 AA4 2 ILE A 390 ASP A 393 -1 O ILE A 392 N ILE A 378 SHEET 1 AA5 6 LEU B 133 SER B 143 0 SHEET 2 AA5 6 LEU B 149 VAL B 155 -1 O PHE B 151 N SER B 143 SHEET 3 AA5 6 LYS B 160 ASN B 166 -1 O ALA B 165 N ARG B 150 SHEET 4 AA5 6 LEU B 204 SER B 215 1 O LEU B 204 N GLN B 162 SHEET 5 AA5 6 ILE B 189 LYS B 198 -1 N GLY B 191 O ILE B 212 SHEET 6 AA5 6 LEU B 133 SER B 143 -1 N ILE B 135 O ILE B 192 SHEET 1 AA6 8 PHE B 271 GLU B 272 0 SHEET 2 AA6 8 LYS B 321 PHE B 329 1 O LYS B 321 N PHE B 271 SHEET 3 AA6 8 GLU B 341 ALA B 350 -1 O TYR B 348 N VAL B 322 SHEET 4 AA6 8 THR B 550 GLY B 556 -1 O GLY B 551 N TRP B 349 SHEET 5 AA6 8 LYS B 499 THR B 506 -1 N TYR B 505 O GLY B 552 SHEET 6 AA6 8 LEU B 492 ILE B 496 -1 N LEU B 492 O ALA B 504 SHEET 7 AA6 8 PHE B 466 VAL B 469 -1 N ILE B 468 O GLU B 493 SHEET 8 AA6 8 LYS B 400 SER B 402 1 N VAL B 401 O PHE B 467 SHEET 1 AA7 3 MET B 278 ASN B 279 0 SHEET 2 AA7 3 LEU B 299 LEU B 303 -1 O TYR B 302 N ASN B 279 SHEET 3 AA7 3 PHE B 290 HIS B 294 -1 N HIS B 294 O LEU B 299 SHEET 1 AA8 2 LYS B 377 TYR B 380 0 SHEET 2 AA8 2 ILE B 390 ASP B 393 -1 O ILE B 390 N TYR B 380 SSBOND 1 CYS A 517 CYS A 540 1555 1555 2.03 SSBOND 2 CYS B 517 CYS B 540 1555 1555 2.03 CISPEP 1 PRO A 396 PRO A 397 0 -1.98 CISPEP 2 GLN A 417 PRO A 418 0 -0.84 CISPEP 3 ASN A 441 PRO A 442 0 -8.43 CISPEP 4 PRO B 396 PRO B 397 0 0.87 CISPEP 5 GLN B 417 PRO B 418 0 6.89 CISPEP 6 ASN B 441 PRO B 442 0 0.66 CRYST1 69.717 92.257 162.624 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006149 0.00000