HEADER MEMBRANE PROTEIN 03-AUG-23 8KB4 TITLE CRYO-EM STRUCTURE OF HUMAN TMEM87A A308M COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN 87A,EGFP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: TRANSMEMBRANE PROTEIN 87A A308M WITH GFP AND TWIN COMPND 7 STREP TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, HUMAN ADENOVIRUS C SEROTYPE 2; SOURCE 3 ORGANISM_COMMON: HUMAN, HADV-2, HUMAN ADENOVIRUS 2; SOURCE 4 ORGANISM_TAXID: 9606, 10515; SOURCE 5 GENE: TMEM87A; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 9 EXPRESSION_SYSTEM_CELL: EXPI293F KEYWDS NON-SELECTIVE CATION CHANNEL, ION CHANNEL, MEMBRANE PROTEIN, GOLGI- KEYWDS 2 LOCALIZED PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.HAN,H.M.KIM REVDAT 1 10-JUL-24 8KB4 0 JRNL AUTH A.HAN,H.M.KIM JRNL TITL CRYO-EM STRUCTURE OF HUMAN TMEM87A, PE-BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, UCSF REMARK 3 CHIMERA, PHENIX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 40.000 REMARK 3 REMARK 3 FITTING PROCEDURE : CHIMERA FIT IN MAP TOOL WAS USED FOR INITIAL REMARK 3 LOCAL FITTING. THEN, REAL-SPACE REFINEMENT WITH THE RIGID BODY REMARK 3 OPTION IN PHENIX WAS USED FOR FLEXIBLE FITTING. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 360876 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8KB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040017. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TRANSMEMBRANE PROTEIN 87A A308M REMARK 245 WITH GFP TAG AND TWIN-STREP TAG REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.80 REMARK 245 SAMPLE SUPPORT DETAILS : THE GRID WAS NEGATIVELY GLOW REMARK 245 -DISCHARGED FOR 60 SEC WITH 15MA REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 9.00 REMARK 245 SAMPLE DETAILS : TRANSMEMBRANE PROTEIN 87A A308M REMARK 245 WITH GFP TAG AND TWIN-STREP TAG PURIFIED WITH DETERGENT LMNG/CHS REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4565 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1900.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6770.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : 58900 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : USING ZEMLIN TABLEAU IN REMARK 245 SHERPA REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 TRP A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 VAL A 12 REMARK 465 ILE A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 HIS A 20 REMARK 465 PRO A 21 REMARK 465 SER A 22 REMARK 465 PRO A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 PHE A 26 REMARK 465 PHE A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 VAL A 34 REMARK 465 ALA A 35 REMARK 465 ALA A 36 REMARK 465 ALA A 37 REMARK 465 LEU A 147 REMARK 465 LEU A 148 REMARK 465 GLY A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 GLN A 152 REMARK 465 GLU A 153 REMARK 465 ALA A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 ASN A 157 REMARK 465 GLY A 158 REMARK 465 THR A 159 REMARK 465 ASN A 160 REMARK 465 LEU A 161 REMARK 465 THR A 162 REMARK 465 PHE A 163 REMARK 465 ILE A 164 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 LYS A 167 REMARK 465 SER A 193 REMARK 465 LYS A 194 REMARK 465 GLU A 195 REMARK 465 SER A 196 REMARK 465 SER A 197 REMARK 465 LYS A 198 REMARK 465 GLU A 199 REMARK 465 ASN A 200 REMARK 465 SER A 201 REMARK 465 LEU A 202 REMARK 465 PHE A 471 REMARK 465 SER A 472 REMARK 465 PRO A 473 REMARK 465 LEU A 474 REMARK 465 SER A 475 REMARK 465 GLU A 476 REMARK 465 GLU A 477 REMARK 465 GLU A 478 REMARK 465 GLU A 479 REMARK 465 GLU A 480 REMARK 465 ASP A 481 REMARK 465 GLU A 482 REMARK 465 GLN A 483 REMARK 465 LYS A 484 REMARK 465 GLU A 485 REMARK 465 PRO A 486 REMARK 465 MET A 487 REMARK 465 LEU A 488 REMARK 465 LYS A 489 REMARK 465 GLU A 490 REMARK 465 SER A 491 REMARK 465 PHE A 492 REMARK 465 GLU A 493 REMARK 465 GLY A 494 REMARK 465 MET A 495 REMARK 465 LYS A 496 REMARK 465 MET A 497 REMARK 465 ARG A 498 REMARK 465 SER A 499 REMARK 465 THR A 500 REMARK 465 LYS A 501 REMARK 465 GLN A 502 REMARK 465 GLU A 503 REMARK 465 PRO A 504 REMARK 465 ASN A 505 REMARK 465 GLY A 506 REMARK 465 ASN A 507 REMARK 465 SER A 508 REMARK 465 LYS A 509 REMARK 465 VAL A 510 REMARK 465 ASN A 511 REMARK 465 LYS A 512 REMARK 465 ALA A 513 REMARK 465 GLN A 514 REMARK 465 GLU A 515 REMARK 465 ASP A 516 REMARK 465 ASP A 517 REMARK 465 LEU A 518 REMARK 465 LYS A 519 REMARK 465 TRP A 520 REMARK 465 VAL A 521 REMARK 465 GLU A 522 REMARK 465 GLU A 523 REMARK 465 ASN A 524 REMARK 465 VAL A 525 REMARK 465 PRO A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 VAL A 529 REMARK 465 THR A 530 REMARK 465 ASP A 531 REMARK 465 VAL A 532 REMARK 465 ALA A 533 REMARK 465 LEU A 534 REMARK 465 PRO A 535 REMARK 465 ALA A 536 REMARK 465 LEU A 537 REMARK 465 LEU A 538 REMARK 465 ASP A 539 REMARK 465 SER A 540 REMARK 465 ASP A 541 REMARK 465 GLU A 542 REMARK 465 GLU A 543 REMARK 465 ARG A 544 REMARK 465 MET A 545 REMARK 465 ILE A 546 REMARK 465 THR A 547 REMARK 465 HIS A 548 REMARK 465 PHE A 549 REMARK 465 GLU A 550 REMARK 465 ARG A 551 REMARK 465 SER A 552 REMARK 465 LYS A 553 REMARK 465 MET A 554 REMARK 465 GLU A 555 REMARK 465 LEU A 556 REMARK 465 LYS A 557 REMARK 465 GLU A 558 REMARK 465 ASN A 559 REMARK 465 LEU A 560 REMARK 465 TYR A 561 REMARK 465 PHE A 562 REMARK 465 GLN A 563 REMARK 465 GLY A 564 REMARK 465 ASN A 565 REMARK 465 PRO A 566 REMARK 465 ALA A 567 REMARK 465 PHE A 568 REMARK 465 LEU A 569 REMARK 465 TYR A 570 REMARK 465 LYS A 571 REMARK 465 VAL A 572 REMARK 465 VAL A 573 REMARK 465 ASP A 574 REMARK 465 PRO A 575 REMARK 465 VAL A 576 REMARK 465 VAL A 577 REMARK 465 SER A 578 REMARK 465 LYS A 579 REMARK 465 GLY A 580 REMARK 465 GLU A 581 REMARK 465 GLU A 582 REMARK 465 LEU A 583 REMARK 465 PHE A 584 REMARK 465 THR A 585 REMARK 465 GLY A 586 REMARK 465 VAL A 587 REMARK 465 VAL A 588 REMARK 465 PRO A 589 REMARK 465 ILE A 590 REMARK 465 LEU A 591 REMARK 465 VAL A 592 REMARK 465 GLU A 593 REMARK 465 LEU A 594 REMARK 465 ASP A 595 REMARK 465 GLY A 596 REMARK 465 ASP A 597 REMARK 465 VAL A 598 REMARK 465 ASN A 599 REMARK 465 GLY A 600 REMARK 465 HIS A 601 REMARK 465 LYS A 602 REMARK 465 PHE A 603 REMARK 465 SER A 604 REMARK 465 VAL A 605 REMARK 465 SER A 606 REMARK 465 GLY A 607 REMARK 465 GLU A 608 REMARK 465 GLY A 609 REMARK 465 GLU A 610 REMARK 465 GLY A 611 REMARK 465 ASP A 612 REMARK 465 ALA A 613 REMARK 465 THR A 614 REMARK 465 TYR A 615 REMARK 465 GLY A 616 REMARK 465 LYS A 617 REMARK 465 LEU A 618 REMARK 465 THR A 619 REMARK 465 LEU A 620 REMARK 465 LYS A 621 REMARK 465 PHE A 622 REMARK 465 ILE A 623 REMARK 465 CYS A 624 REMARK 465 THR A 625 REMARK 465 THR A 626 REMARK 465 GLY A 627 REMARK 465 LYS A 628 REMARK 465 LEU A 629 REMARK 465 PRO A 630 REMARK 465 VAL A 631 REMARK 465 PRO A 632 REMARK 465 TRP A 633 REMARK 465 PRO A 634 REMARK 465 THR A 635 REMARK 465 LEU A 636 REMARK 465 VAL A 637 REMARK 465 THR A 638 REMARK 465 THR A 639 REMARK 465 LEU A 640 REMARK 465 THR A 641 REMARK 465 TYR A 642 REMARK 465 GLY A 643 REMARK 465 VAL A 644 REMARK 465 GLN A 645 REMARK 465 CYS A 646 REMARK 465 PHE A 647 REMARK 465 SER A 648 REMARK 465 ARG A 649 REMARK 465 TYR A 650 REMARK 465 PRO A 651 REMARK 465 ASP A 652 REMARK 465 HIS A 653 REMARK 465 MET A 654 REMARK 465 LYS A 655 REMARK 465 GLN A 656 REMARK 465 HIS A 657 REMARK 465 ASP A 658 REMARK 465 PHE A 659 REMARK 465 PHE A 660 REMARK 465 LYS A 661 REMARK 465 SER A 662 REMARK 465 ALA A 663 REMARK 465 MET A 664 REMARK 465 PRO A 665 REMARK 465 GLU A 666 REMARK 465 GLY A 667 REMARK 465 TYR A 668 REMARK 465 VAL A 669 REMARK 465 GLN A 670 REMARK 465 GLU A 671 REMARK 465 ARG A 672 REMARK 465 THR A 673 REMARK 465 ILE A 674 REMARK 465 PHE A 675 REMARK 465 PHE A 676 REMARK 465 LYS A 677 REMARK 465 ASP A 678 REMARK 465 ASP A 679 REMARK 465 GLY A 680 REMARK 465 ASN A 681 REMARK 465 TYR A 682 REMARK 465 LYS A 683 REMARK 465 THR A 684 REMARK 465 ARG A 685 REMARK 465 ALA A 686 REMARK 465 GLU A 687 REMARK 465 VAL A 688 REMARK 465 LYS A 689 REMARK 465 PHE A 690 REMARK 465 GLU A 691 REMARK 465 GLY A 692 REMARK 465 ASP A 693 REMARK 465 THR A 694 REMARK 465 LEU A 695 REMARK 465 VAL A 696 REMARK 465 ASN A 697 REMARK 465 ARG A 698 REMARK 465 ILE A 699 REMARK 465 GLU A 700 REMARK 465 LEU A 701 REMARK 465 LYS A 702 REMARK 465 GLY A 703 REMARK 465 ILE A 704 REMARK 465 ASP A 705 REMARK 465 PHE A 706 REMARK 465 LYS A 707 REMARK 465 GLU A 708 REMARK 465 ASP A 709 REMARK 465 GLY A 710 REMARK 465 ASN A 711 REMARK 465 ILE A 712 REMARK 465 LEU A 713 REMARK 465 GLY A 714 REMARK 465 HIS A 715 REMARK 465 LYS A 716 REMARK 465 LEU A 717 REMARK 465 GLU A 718 REMARK 465 TYR A 719 REMARK 465 ASN A 720 REMARK 465 TYR A 721 REMARK 465 ASN A 722 REMARK 465 SER A 723 REMARK 465 HIS A 724 REMARK 465 ASN A 725 REMARK 465 VAL A 726 REMARK 465 TYR A 727 REMARK 465 ILE A 728 REMARK 465 MET A 729 REMARK 465 ALA A 730 REMARK 465 ASP A 731 REMARK 465 LYS A 732 REMARK 465 GLN A 733 REMARK 465 LYS A 734 REMARK 465 ASN A 735 REMARK 465 GLY A 736 REMARK 465 ILE A 737 REMARK 465 LYS A 738 REMARK 465 VAL A 739 REMARK 465 ASN A 740 REMARK 465 PHE A 741 REMARK 465 LYS A 742 REMARK 465 ILE A 743 REMARK 465 ARG A 744 REMARK 465 HIS A 745 REMARK 465 ASN A 746 REMARK 465 ILE A 747 REMARK 465 GLU A 748 REMARK 465 ASP A 749 REMARK 465 GLY A 750 REMARK 465 SER A 751 REMARK 465 VAL A 752 REMARK 465 GLN A 753 REMARK 465 LEU A 754 REMARK 465 ALA A 755 REMARK 465 ASP A 756 REMARK 465 HIS A 757 REMARK 465 TYR A 758 REMARK 465 GLN A 759 REMARK 465 GLN A 760 REMARK 465 ASN A 761 REMARK 465 THR A 762 REMARK 465 PRO A 763 REMARK 465 ILE A 764 REMARK 465 GLY A 765 REMARK 465 ASP A 766 REMARK 465 GLY A 767 REMARK 465 PRO A 768 REMARK 465 VAL A 769 REMARK 465 LEU A 770 REMARK 465 LEU A 771 REMARK 465 PRO A 772 REMARK 465 ASP A 773 REMARK 465 ASN A 774 REMARK 465 HIS A 775 REMARK 465 TYR A 776 REMARK 465 LEU A 777 REMARK 465 SER A 778 REMARK 465 THR A 779 REMARK 465 GLN A 780 REMARK 465 SER A 781 REMARK 465 ALA A 782 REMARK 465 LEU A 783 REMARK 465 SER A 784 REMARK 465 LYS A 785 REMARK 465 ASP A 786 REMARK 465 PRO A 787 REMARK 465 ASN A 788 REMARK 465 GLU A 789 REMARK 465 LYS A 790 REMARK 465 ARG A 791 REMARK 465 ASP A 792 REMARK 465 HIS A 793 REMARK 465 MET A 794 REMARK 465 VAL A 795 REMARK 465 LEU A 796 REMARK 465 LEU A 797 REMARK 465 GLU A 798 REMARK 465 PHE A 799 REMARK 465 VAL A 800 REMARK 465 THR A 801 REMARK 465 ALA A 802 REMARK 465 ALA A 803 REMARK 465 GLY A 804 REMARK 465 ILE A 805 REMARK 465 THR A 806 REMARK 465 LEU A 807 REMARK 465 GLY A 808 REMARK 465 MET A 809 REMARK 465 ASP A 810 REMARK 465 GLU A 811 REMARK 465 LEU A 812 REMARK 465 TYR A 813 REMARK 465 LYS A 814 REMARK 465 GLU A 815 REMARK 465 PHE A 816 REMARK 465 LEU A 817 REMARK 465 VAL A 818 REMARK 465 PRO A 819 REMARK 465 ARG A 820 REMARK 465 GLY A 821 REMARK 465 SER A 822 REMARK 465 SER A 823 REMARK 465 ARG A 824 REMARK 465 SER A 825 REMARK 465 ALA A 826 REMARK 465 TRP A 827 REMARK 465 SER A 828 REMARK 465 HIS A 829 REMARK 465 PRO A 830 REMARK 465 GLN A 831 REMARK 465 PHE A 832 REMARK 465 GLU A 833 REMARK 465 LYS A 834 REMARK 465 GLY A 835 REMARK 465 GLY A 836 REMARK 465 GLY A 837 REMARK 465 SER A 838 REMARK 465 GLY A 839 REMARK 465 GLY A 840 REMARK 465 GLY A 841 REMARK 465 SER A 842 REMARK 465 GLY A 843 REMARK 465 GLY A 844 REMARK 465 SER A 845 REMARK 465 ALA A 846 REMARK 465 TRP A 847 REMARK 465 SER A 848 REMARK 465 HIS A 849 REMARK 465 PRO A 850 REMARK 465 GLN A 851 REMARK 465 PHE A 852 REMARK 465 GLU A 853 REMARK 465 LYS A 854 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 -5.15 76.43 REMARK 500 PHE A 60 -177.56 -67.68 REMARK 500 ASN A 95 35.59 -99.99 REMARK 500 CYS A 128 130.30 -170.71 REMARK 500 SER A 129 36.09 -98.39 REMARK 500 GLU A 222 4.22 59.09 REMARK 500 LYS A 332 -6.61 74.24 REMARK 500 VAL A 333 -61.09 -122.97 REMARK 500 ASP A 358 15.23 49.84 REMARK 500 LEU A 362 56.10 -97.51 REMARK 500 ARG A 393 -1.83 79.68 REMARK 500 ARG A 427 56.14 -94.29 REMARK 500 GLU A 437 57.57 -95.61 REMARK 500 TRP A 460 56.85 -97.09 REMARK 500 ASN A 465 54.21 -91.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8HSI RELATED DB: PDB REMARK 900 TMEM87A WT REMARK 900 RELATED ID: 8HTT RELATED DB: PDB REMARK 900 TMEM87A COMPLEXED WITH GLUCONAT REMARK 900 RELATED ID: EMD-37069 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN TMEM87A A308M DBREF 8KB4 A 1 555 UNP Q8NBN3 TM87A_HUMAN 1 555 DBREF1 8KB4 A 577 814 UNP A0A6M5E0N3_ADE02 DBREF2 8KB4 A A0A6M5E0N3 2 239 SEQADV 8KB4 MET A 308 UNP Q8NBN3 ALA 308 ENGINEERED MUTATION SEQADV 8KB4 LEU A 556 UNP Q8NBN3 LINKER SEQADV 8KB4 LYS A 557 UNP Q8NBN3 LINKER SEQADV 8KB4 GLU A 558 UNP Q8NBN3 LINKER SEQADV 8KB4 ASN A 559 UNP Q8NBN3 LINKER SEQADV 8KB4 LEU A 560 UNP Q8NBN3 LINKER SEQADV 8KB4 TYR A 561 UNP Q8NBN3 LINKER SEQADV 8KB4 PHE A 562 UNP Q8NBN3 LINKER SEQADV 8KB4 GLN A 563 UNP Q8NBN3 LINKER SEQADV 8KB4 GLY A 564 UNP Q8NBN3 LINKER SEQADV 8KB4 ASN A 565 UNP Q8NBN3 LINKER SEQADV 8KB4 PRO A 566 UNP Q8NBN3 LINKER SEQADV 8KB4 ALA A 567 UNP Q8NBN3 LINKER SEQADV 8KB4 PHE A 568 UNP Q8NBN3 LINKER SEQADV 8KB4 LEU A 569 UNP Q8NBN3 LINKER SEQADV 8KB4 TYR A 570 UNP Q8NBN3 LINKER SEQADV 8KB4 LYS A 571 UNP Q8NBN3 LINKER SEQADV 8KB4 VAL A 572 UNP Q8NBN3 LINKER SEQADV 8KB4 VAL A 573 UNP Q8NBN3 LINKER SEQADV 8KB4 ASP A 574 UNP Q8NBN3 LINKER SEQADV 8KB4 PRO A 575 UNP Q8NBN3 LINKER SEQADV 8KB4 VAL A 576 UNP Q8NBN3 LINKER SEQADV 8KB4 GLN A 760 UNP A0A6M5E0N HIS 185 CONFLICT SEQADV 8KB4 GLU A 815 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 PHE A 816 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 LEU A 817 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 VAL A 818 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 PRO A 819 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 ARG A 820 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 821 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 822 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 823 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 ARG A 824 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 825 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 ALA A 826 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 TRP A 827 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 828 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 HIS A 829 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 PRO A 830 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLN A 831 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 PHE A 832 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLU A 833 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 LYS A 834 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 835 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 836 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 837 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 838 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 839 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 840 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 841 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 842 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 843 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLY A 844 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 845 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 ALA A 846 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 TRP A 847 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 SER A 848 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 HIS A 849 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 PRO A 850 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLN A 851 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 PHE A 852 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 GLU A 853 UNP A0A6M5E0N EXPRESSION TAG SEQADV 8KB4 LYS A 854 UNP A0A6M5E0N EXPRESSION TAG SEQRES 1 A 854 MET ALA ALA ALA ALA TRP LEU GLN VAL LEU PRO VAL ILE SEQRES 2 A 854 LEU LEU LEU LEU GLY ALA HIS PRO SER PRO LEU SER PHE SEQRES 3 A 854 PHE SER ALA GLY PRO ALA THR VAL ALA ALA ALA ASP ARG SEQRES 4 A 854 SER LYS TRP HIS ILE PRO ILE PRO SER GLY LYS ASN TYR SEQRES 5 A 854 PHE SER PHE GLY LYS ILE LEU PHE ARG ASN THR THR ILE SEQRES 6 A 854 PHE LEU LYS PHE ASP GLY GLU PRO CYS ASP LEU SER LEU SEQRES 7 A 854 ASN ILE THR TRP TYR LEU LYS SER ALA ASP CYS TYR ASN SEQRES 8 A 854 GLU ILE TYR ASN PHE LYS ALA GLU GLU VAL GLU LEU TYR SEQRES 9 A 854 LEU GLU LYS LEU LYS GLU LYS ARG GLY LEU SER GLY LYS SEQRES 10 A 854 TYR GLN THR SER SER LYS LEU PHE GLN ASN CYS SER GLU SEQRES 11 A 854 LEU PHE LYS THR GLN THR PHE SER GLY ASP PHE MET HIS SEQRES 12 A 854 ARG LEU PRO LEU LEU GLY GLU LYS GLN GLU ALA LYS GLU SEQRES 13 A 854 ASN GLY THR ASN LEU THR PHE ILE GLY ASP LYS THR ALA SEQRES 14 A 854 MET HIS GLU PRO LEU GLN THR TRP GLN ASP ALA PRO TYR SEQRES 15 A 854 ILE PHE ILE VAL HIS ILE GLY ILE SER SER SER LYS GLU SEQRES 16 A 854 SER SER LYS GLU ASN SER LEU SER ASN LEU PHE THR MET SEQRES 17 A 854 THR VAL GLU VAL LYS GLY PRO TYR GLU TYR LEU THR LEU SEQRES 18 A 854 GLU ASP TYR PRO LEU MET ILE PHE PHE MET VAL MET CYS SEQRES 19 A 854 ILE VAL TYR VAL LEU PHE GLY VAL LEU TRP LEU ALA TRP SEQRES 20 A 854 SER ALA CYS TYR TRP ARG ASP LEU LEU ARG ILE GLN PHE SEQRES 21 A 854 TRP ILE GLY ALA VAL ILE PHE LEU GLY MET LEU GLU LYS SEQRES 22 A 854 ALA VAL PHE TYR ALA GLU PHE GLN ASN ILE ARG TYR LYS SEQRES 23 A 854 GLY GLU SER VAL GLN GLY ALA LEU ILE LEU ALA GLU LEU SEQRES 24 A 854 LEU SER ALA VAL LYS ARG SER LEU MET ARG THR LEU VAL SEQRES 25 A 854 ILE ILE VAL SER LEU GLY TYR GLY ILE VAL LYS PRO ARG SEQRES 26 A 854 LEU GLY VAL THR LEU HIS LYS VAL VAL VAL ALA GLY ALA SEQRES 27 A 854 LEU TYR LEU LEU PHE SER GLY MET GLU GLY VAL LEU ARG SEQRES 28 A 854 VAL THR GLY ALA GLN THR ASP LEU ALA SER LEU ALA PHE SEQRES 29 A 854 ILE PRO LEU ALA PHE LEU ASP THR ALA LEU CYS TRP TRP SEQRES 30 A 854 ILE PHE ILE SER LEU THR GLN THR MET LYS LEU LEU LYS SEQRES 31 A 854 LEU ARG ARG ASN ILE VAL LYS LEU SER LEU TYR ARG HIS SEQRES 32 A 854 PHE THR ASN THR LEU ILE LEU ALA VAL ALA ALA SER ILE SEQRES 33 A 854 VAL PHE ILE ILE TRP THR THR MET LYS PHE ARG ILE VAL SEQRES 34 A 854 THR CYS GLN SER ASP TRP ARG GLU LEU TRP VAL ASP ASP SEQRES 35 A 854 ALA ILE TRP ARG LEU LEU PHE SER MET ILE LEU PHE VAL SEQRES 36 A 854 ILE MET VAL LEU TRP ARG PRO SER ALA ASN ASN GLN ARG SEQRES 37 A 854 PHE ALA PHE SER PRO LEU SER GLU GLU GLU GLU GLU ASP SEQRES 38 A 854 GLU GLN LYS GLU PRO MET LEU LYS GLU SER PHE GLU GLY SEQRES 39 A 854 MET LYS MET ARG SER THR LYS GLN GLU PRO ASN GLY ASN SEQRES 40 A 854 SER LYS VAL ASN LYS ALA GLN GLU ASP ASP LEU LYS TRP SEQRES 41 A 854 VAL GLU GLU ASN VAL PRO SER SER VAL THR ASP VAL ALA SEQRES 42 A 854 LEU PRO ALA LEU LEU ASP SER ASP GLU GLU ARG MET ILE SEQRES 43 A 854 THR HIS PHE GLU ARG SER LYS MET GLU LEU LYS GLU ASN SEQRES 44 A 854 LEU TYR PHE GLN GLY ASN PRO ALA PHE LEU TYR LYS VAL SEQRES 45 A 854 VAL ASP PRO VAL VAL SER LYS GLY GLU GLU LEU PHE THR SEQRES 46 A 854 GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL SEQRES 47 A 854 ASN GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY SEQRES 48 A 854 ASP ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS SEQRES 49 A 854 THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL SEQRES 50 A 854 THR THR LEU THR TYR GLY VAL GLN CYS PHE SER ARG TYR SEQRES 51 A 854 PRO ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA SEQRES 52 A 854 MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE SEQRES 53 A 854 LYS ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL LYS SEQRES 54 A 854 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS SEQRES 55 A 854 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS SEQRES 56 A 854 LYS LEU GLU TYR ASN TYR ASN SER HIS ASN VAL TYR ILE SEQRES 57 A 854 MET ALA ASP LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE SEQRES 58 A 854 LYS ILE ARG HIS ASN ILE GLU ASP GLY SER VAL GLN LEU SEQRES 59 A 854 ALA ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY SEQRES 60 A 854 PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN SEQRES 61 A 854 SER ALA LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS SEQRES 62 A 854 MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR SEQRES 63 A 854 LEU GLY MET ASP GLU LEU TYR LYS GLU PHE LEU VAL PRO SEQRES 64 A 854 ARG GLY SER SER ARG SER ALA TRP SER HIS PRO GLN PHE SEQRES 65 A 854 GLU LYS GLY GLY GLY SER GLY GLY GLY SER GLY GLY SER SEQRES 66 A 854 ALA TRP SER HIS PRO GLN PHE GLU LYS HET NAG A 901 14 HET NAG A 902 14 HET 65I A 903 75 HET NAG A 904 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 65I (9R,12R)-15-AMINO-12-HYDROXY-6,12-DIOXO-7,11,13-TRIOXA- HETNAM 2 65I 12LAMBDA~5~-PHOSPHAPENTADECAN-9-YL UNDECANOATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 65I C22 H44 N O8 P HELIX 1 AA1 TYR A 90 ASN A 95 1 6 HELIX 2 AA2 LYS A 97 GLU A 99 5 3 HELIX 3 AA3 GLU A 100 GLU A 110 1 11 HELIX 4 AA4 ASP A 223 TYR A 251 1 29 HELIX 5 AA5 LEU A 256 GLY A 287 1 32 HELIX 6 AA6 ALA A 293 GLY A 318 1 26 HELIX 7 AA7 LEU A 326 HIS A 331 1 6 HELIX 8 AA8 VAL A 334 GLY A 337 5 4 HELIX 9 AA9 ALA A 338 GLY A 354 1 17 HELIX 10 AB1 ALA A 363 ARG A 393 1 31 HELIX 11 AB2 ILE A 395 ARG A 427 1 33 HELIX 12 AB3 TRP A 439 ASP A 442 5 4 HELIX 13 AB4 ALA A 443 TRP A 460 1 18 SHEET 1 AA1 3 LYS A 41 ILE A 44 0 SHEET 2 AA1 3 PHE A 206 LYS A 213 -1 O VAL A 210 N TRP A 42 SHEET 3 AA1 3 THR A 64 GLY A 71 -1 N LYS A 68 O THR A 209 SHEET 1 AA2 4 PHE A 53 LEU A 59 0 SHEET 2 AA2 4 ALA A 180 SER A 191 -1 O PHE A 184 N PHE A 55 SHEET 3 AA2 4 SER A 77 SER A 86 -1 N SER A 77 O SER A 191 SHEET 4 AA2 4 TYR A 118 PHE A 125 -1 O PHE A 125 N LEU A 78 SSBOND 1 CYS A 74 CYS A 128 1555 1555 2.03 SSBOND 2 CYS A 89 CYS A 431 1555 1555 2.04 LINK ND2 ASN A 79 C1 NAG A 901 1555 1555 1.44 LINK ND2 ASN A 127 C1 NAG A 902 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000