HEADER OXYGEN STORAGE 15-AUG-23 8KFH TITLE CRYSTAL STRUCTURE OF SPERM WHALE MYOGLOBIN RECONSTITUTED WITH TITLE 2 MANGANESE PORPHYCENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSETER CATODON; SOURCE 3 ORGANISM_COMMON: SPERM WHALE; SOURCE 4 ORGANISM_TAXID: 9755; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLOBIN FOLD, OXYGEN TRANSPORT, MUSCLES, OXYGEN STORAGE EXPDTA X-RAY DIFFRACTION AUTHOR E.MIZOHATA,K.OOHORA,T.HAYASHI REVDAT 1 21-AUG-24 8KFH 0 JRNL AUTH K.OOHORA,Y.KAGAWA,T.NISHIURA,E.MIZOHATA,U.SCHWANEBERG, JRNL AUTH 2 T.HAYASHI JRNL TITL RATIONAL DESIGN OF AN ARTIFICIAL ETHYLBENZENE HYDROXYLASE JRNL TITL 2 USING MOLECULAR DYNAMICS SIMULATION TO ENHANCE THE JRNL TITL 3 ENANTIOSELECTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1608 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.36000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -5.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2782 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3777 ; 4.161 ; 1.684 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.768 ;23.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;21.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2076 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1288 ; 3.654 ; 4.653 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1609 ; 5.140 ; 6.952 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 5.750 ; 5.327 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11664 ;10.829 ;87.613 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -6 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9205 -16.1146 27.0709 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.2306 REMARK 3 T33: 0.5899 T12: -0.0326 REMARK 3 T13: 0.0017 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.3774 L22: 1.9879 REMARK 3 L33: 1.2508 L12: 0.3556 REMARK 3 L13: -0.1260 L23: -0.9296 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: -0.0729 S13: -0.0291 REMARK 3 S21: 0.1795 S22: -0.2010 S23: 0.0353 REMARK 3 S31: -0.1911 S32: 0.1081 S33: 0.0082 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -6 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6446 -6.8018 10.2020 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: 0.2147 REMARK 3 T33: 0.5937 T12: 0.0105 REMARK 3 T13: 0.0139 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.4711 L22: 1.4880 REMARK 3 L33: 0.6786 L12: -0.0074 REMARK 3 L13: 0.1659 L23: 0.0738 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.0597 S13: -0.0241 REMARK 3 S21: -0.0769 S22: -0.0466 S23: -0.1333 REMARK 3 S31: -0.0242 S32: 0.0311 S33: 0.0368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8KFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.560 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14400 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.99400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 100 MM TRIS REMARK 280 -HCL BUFFER AT PH 8.2, 4% ACETONE AND 10% TREHALOSE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.47650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.34950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.47650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.34950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 TRP A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 PRO A -12 REMARK 465 GLN A -11 REMARK 465 PHE A -10 REMARK 465 GLU A -9 REMARK 465 LYS A -8 REMARK 465 GLU A -7 REMARK 465 MET B -16 REMARK 465 TRP B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 PRO B -12 REMARK 465 GLN B -11 REMARK 465 PHE B -10 REMARK 465 GLU B -9 REMARK 465 LYS B -8 REMARK 465 GLU B -7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 335 O HOH A 336 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 45 NE ARG B 45 CZ 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 45 CD - NE - CZ ANGL. DEV. = 19.4 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 45 NE - CZ - NH2 ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 1 -64.90 62.01 REMARK 500 HIS A 36 75.89 -153.38 REMARK 500 PHE A 46 44.82 -157.13 REMARK 500 LYS A 50 -51.38 -129.13 REMARK 500 THR A 95 -73.98 -121.50 REMARK 500 VAL B 1 -62.36 70.14 REMARK 500 ASP B 44 -70.62 -52.99 REMARK 500 ARG B 45 2.79 -53.13 REMARK 500 PHE B 46 24.78 -156.73 REMARK 500 LYS B 50 -57.36 -122.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 357 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HNN A 201 NB 98.8 REMARK 620 3 HNN A 201 NC 99.8 82.2 REMARK 620 4 HNN A 201 NA 101.8 91.0 158.1 REMARK 620 5 HNN A 201 ND 94.6 166.5 95.0 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HNN B 201 NB 94.6 REMARK 620 3 HNN B 201 NC 108.9 83.1 REMARK 620 4 HNN B 201 NA 91.5 93.6 159.5 REMARK 620 5 HNN B 201 ND 97.4 167.8 95.0 84.0 REMARK 620 N 1 2 3 4 DBREF 8KFH A 1 153 UNP P02185 MYG_PHYMC 2 154 DBREF 8KFH B 1 153 UNP P02185 MYG_PHYMC 2 154 SEQADV 8KFH MET A -16 UNP P02185 INITIATING METHIONINE SEQADV 8KFH TRP A -15 UNP P02185 EXPRESSION TAG SEQADV 8KFH SER A -14 UNP P02185 EXPRESSION TAG SEQADV 8KFH HIS A -13 UNP P02185 EXPRESSION TAG SEQADV 8KFH PRO A -12 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLN A -11 UNP P02185 EXPRESSION TAG SEQADV 8KFH PHE A -10 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLU A -9 UNP P02185 EXPRESSION TAG SEQADV 8KFH LYS A -8 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLU A -7 UNP P02185 EXPRESSION TAG SEQADV 8KFH ASN A -6 UNP P02185 EXPRESSION TAG SEQADV 8KFH LEU A -5 UNP P02185 EXPRESSION TAG SEQADV 8KFH TYR A -4 UNP P02185 EXPRESSION TAG SEQADV 8KFH PHE A -3 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLN A -2 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLY A -1 UNP P02185 EXPRESSION TAG SEQADV 8KFH LYS A 0 UNP P02185 EXPRESSION TAG SEQADV 8KFH ASN A 122 UNP P02185 ASP 123 ENGINEERED MUTATION SEQADV 8KFH MET B -16 UNP P02185 INITIATING METHIONINE SEQADV 8KFH TRP B -15 UNP P02185 EXPRESSION TAG SEQADV 8KFH SER B -14 UNP P02185 EXPRESSION TAG SEQADV 8KFH HIS B -13 UNP P02185 EXPRESSION TAG SEQADV 8KFH PRO B -12 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLN B -11 UNP P02185 EXPRESSION TAG SEQADV 8KFH PHE B -10 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLU B -9 UNP P02185 EXPRESSION TAG SEQADV 8KFH LYS B -8 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLU B -7 UNP P02185 EXPRESSION TAG SEQADV 8KFH ASN B -6 UNP P02185 EXPRESSION TAG SEQADV 8KFH LEU B -5 UNP P02185 EXPRESSION TAG SEQADV 8KFH TYR B -4 UNP P02185 EXPRESSION TAG SEQADV 8KFH PHE B -3 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLN B -2 UNP P02185 EXPRESSION TAG SEQADV 8KFH GLY B -1 UNP P02185 EXPRESSION TAG SEQADV 8KFH LYS B 0 UNP P02185 EXPRESSION TAG SEQADV 8KFH ASN B 122 UNP P02185 ASP 123 ENGINEERED MUTATION SEQRES 1 A 170 MET TRP SER HIS PRO GLN PHE GLU LYS GLU ASN LEU TYR SEQRES 2 A 170 PHE GLN GLY LYS VAL LEU SER GLU GLY GLU TRP GLN LEU SEQRES 3 A 170 VAL LEU HIS VAL TRP ALA LYS VAL GLU ALA ASP VAL ALA SEQRES 4 A 170 GLY HIS GLY GLN ASP ILE LEU ILE ARG LEU PHE LYS SER SEQRES 5 A 170 HIS PRO GLU THR LEU GLU LYS PHE ASP ARG PHE LYS HIS SEQRES 6 A 170 LEU LYS THR GLU ALA GLU MET LYS ALA SER GLU ASP LEU SEQRES 7 A 170 LYS LYS HIS GLY VAL THR VAL LEU THR ALA LEU GLY ALA SEQRES 8 A 170 ILE LEU LYS LYS LYS GLY HIS HIS GLU ALA GLU LEU LYS SEQRES 9 A 170 PRO LEU ALA GLN SER HIS ALA THR LYS HIS LYS ILE PRO SEQRES 10 A 170 ILE LYS TYR LEU GLU PHE ILE SER GLU ALA ILE ILE HIS SEQRES 11 A 170 VAL LEU HIS SER ARG HIS PRO GLY ASN PHE GLY ALA ASP SEQRES 12 A 170 ALA GLN GLY ALA MET ASN LYS ALA LEU GLU LEU PHE ARG SEQRES 13 A 170 LYS ASP ILE ALA ALA LYS TYR LYS GLU LEU GLY TYR GLN SEQRES 14 A 170 GLY SEQRES 1 B 170 MET TRP SER HIS PRO GLN PHE GLU LYS GLU ASN LEU TYR SEQRES 2 B 170 PHE GLN GLY LYS VAL LEU SER GLU GLY GLU TRP GLN LEU SEQRES 3 B 170 VAL LEU HIS VAL TRP ALA LYS VAL GLU ALA ASP VAL ALA SEQRES 4 B 170 GLY HIS GLY GLN ASP ILE LEU ILE ARG LEU PHE LYS SER SEQRES 5 B 170 HIS PRO GLU THR LEU GLU LYS PHE ASP ARG PHE LYS HIS SEQRES 6 B 170 LEU LYS THR GLU ALA GLU MET LYS ALA SER GLU ASP LEU SEQRES 7 B 170 LYS LYS HIS GLY VAL THR VAL LEU THR ALA LEU GLY ALA SEQRES 8 B 170 ILE LEU LYS LYS LYS GLY HIS HIS GLU ALA GLU LEU LYS SEQRES 9 B 170 PRO LEU ALA GLN SER HIS ALA THR LYS HIS LYS ILE PRO SEQRES 10 B 170 ILE LYS TYR LEU GLU PHE ILE SER GLU ALA ILE ILE HIS SEQRES 11 B 170 VAL LEU HIS SER ARG HIS PRO GLY ASN PHE GLY ALA ASP SEQRES 12 B 170 ALA GLN GLY ALA MET ASN LYS ALA LEU GLU LEU PHE ARG SEQRES 13 B 170 LYS ASP ILE ALA ALA LYS TYR LYS GLU LEU GLY TYR GLN SEQRES 14 B 170 GLY HET HNN A 201 43 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET HNN B 201 43 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM HNN PORPHYCENE CONTAINING MN HETNAM SO4 SULFATE ION FORMUL 3 HNN 2(C34 H36 MN N4 O4 2+) FORMUL 4 SO4 6(O4 S 2-) FORMUL 11 HOH *97(H2 O) HELIX 1 AA1 SER A 3 ASP A 20 1 18 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 PRO A 37 LYS A 47 5 11 HELIX 4 AA4 THR A 51 SER A 58 1 8 HELIX 5 AA5 SER A 58 LYS A 78 1 21 HELIX 6 AA6 HIS A 82 THR A 95 1 14 HELIX 7 AA7 PRO A 100 HIS A 119 1 20 HELIX 8 AA8 GLY A 124 LEU A 149 1 26 HELIX 9 AA9 SER B 3 ASP B 20 1 18 HELIX 10 AB1 ASP B 20 HIS B 36 1 17 HELIX 11 AB2 PRO B 37 LYS B 47 5 11 HELIX 12 AB3 THR B 51 SER B 58 1 8 HELIX 13 AB4 SER B 58 LYS B 77 1 20 HELIX 14 AB5 HIS B 82 LYS B 96 1 15 HELIX 15 AB6 PRO B 100 HIS B 119 1 20 HELIX 16 AB7 GLY B 124 LEU B 149 1 26 LINK NE2 HIS A 93 MN HNN A 201 1555 1555 2.20 LINK NE2 HIS B 93 MN HNN B 201 1555 1555 2.40 CRYST1 56.953 80.699 106.820 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009362 0.00000