HEADER VIRAL PROTEIN 19-AUG-23 8KGS TITLE STRUCTURE OF AFRICAN SWINE FEVER VIRUS TOPOISOMERASE II IN COMPLEX TITLE 2 WITH DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_TAXID: 10497; SOURCE 4 GENE: P1192R CDS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOPO 2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.CONG,Y.XIN,X.LI,Y.CHEN REVDAT 1 03-APR-24 8KGS 0 JRNL AUTH C.JINGYUAN,X.YUHUI,L.XUEMEI,Y.CHEN JRNL TITL STRUCTURE OF AFRICAN SWINE FEVER VIRUS TOPOISOMERASE II IN JRNL TITL 2 COMPLEX WITH DSDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.610 REMARK 3 FREE R VALUE TEST SET COUNT : 670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7800 - 4.4499 1.00 2977 138 0.1880 0.2212 REMARK 3 2 4.4499 - 3.5325 1.00 2790 123 0.1690 0.2160 REMARK 3 3 3.5325 - 3.0861 1.00 2707 153 0.2090 0.2645 REMARK 3 4 3.0861 - 2.8040 1.00 2702 136 0.2378 0.2953 REMARK 3 5 2.8040 - 2.6031 1.00 2692 120 0.2626 0.2831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3239 REMARK 3 ANGLE : 1.060 4390 REMARK 3 CHIRALITY : 0.056 509 REMARK 3 PLANARITY : 0.005 546 REMARK 3 DIHEDRAL : 23.879 1198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:54) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6057 12.1859 5.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.1451 REMARK 3 T33: 0.1823 T12: 0.0350 REMARK 3 T13: 0.0078 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.9170 L22: 2.5430 REMARK 3 L33: 2.1582 L12: 0.7523 REMARK 3 L13: 0.5505 L23: 0.5451 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: 0.0420 S13: 0.1769 REMARK 3 S21: -0.0610 S22: -0.0628 S23: 0.0512 REMARK 3 S31: -0.1245 S32: 0.0374 S33: 0.0804 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:118) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1896 17.3886 -11.3144 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.1802 REMARK 3 T33: 0.1975 T12: 0.0633 REMARK 3 T13: -0.0324 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 4.4355 L22: 2.9888 REMARK 3 L33: 2.1837 L12: 0.4562 REMARK 3 L13: 0.7860 L23: -0.6245 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.2429 S13: 0.1435 REMARK 3 S21: -0.2793 S22: -0.0776 S23: 0.3044 REMARK 3 S31: -0.2006 S32: -0.2391 S33: 0.0295 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 119:231) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2904 17.8950 -3.7262 REMARK 3 T TENSOR REMARK 3 T11: 0.3021 T22: 0.2242 REMARK 3 T33: 0.1980 T12: 0.0778 REMARK 3 T13: -0.0179 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 2.1804 L22: 1.5304 REMARK 3 L33: 1.7623 L12: 0.5998 REMARK 3 L13: 0.6038 L23: 0.3459 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: 0.0500 S13: 0.3031 REMARK 3 S21: -0.1572 S22: -0.0116 S23: 0.2012 REMARK 3 S31: -0.3733 S32: -0.3929 S33: 0.0121 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 232:248) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8472 25.1210 -13.3786 REMARK 3 T TENSOR REMARK 3 T11: 0.6364 T22: 0.2333 REMARK 3 T33: 0.3607 T12: -0.0897 REMARK 3 T13: 0.0001 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.7344 L22: 1.3815 REMARK 3 L33: 0.8989 L12: -0.5130 REMARK 3 L13: 0.2911 L23: 0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: 0.2052 S13: 0.5552 REMARK 3 S21: -1.1834 S22: 0.0926 S23: -0.4200 REMARK 3 S31: -0.9242 S32: 0.5317 S33: 0.1492 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 249:332) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1304 7.5049 -13.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.1417 REMARK 3 T33: 0.2227 T12: -0.0385 REMARK 3 T13: 0.0076 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.3443 L22: 1.3522 REMARK 3 L33: 2.2260 L12: 0.4931 REMARK 3 L13: 0.6283 L23: -0.5405 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.0030 S13: -0.0883 REMARK 3 S21: 0.0777 S22: -0.0435 S23: -0.2558 REMARK 3 S31: 0.0785 S32: 0.1612 S33: 0.0290 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 333:346) REMARK 3 ORIGIN FOR THE GROUP (A): 66.1330 -4.7979 -8.5013 REMARK 3 T TENSOR REMARK 3 T11: 0.9306 T22: 0.8804 REMARK 3 T33: 0.9235 T12: 0.0674 REMARK 3 T13: 0.0109 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 3.0699 L22: 5.5613 REMARK 3 L33: 6.4768 L12: 0.8329 REMARK 3 L13: -0.2982 L23: -1.7407 REMARK 3 S TENSOR REMARK 3 S11: -0.7133 S12: -1.5059 S13: -0.9172 REMARK 3 S21: 0.9856 S22: 0.2888 S23: -1.1614 REMARK 3 S31: 0.4175 S32: 1.2750 S33: 0.1655 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 347:387) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8761 1.5879 -13.4743 REMARK 3 T TENSOR REMARK 3 T11: 0.3769 T22: 0.1099 REMARK 3 T33: 0.2337 T12: -0.0212 REMARK 3 T13: -0.0104 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.8731 L22: 0.6901 REMARK 3 L33: 1.6521 L12: 0.5321 REMARK 3 L13: -0.5295 L23: 0.3786 REMARK 3 S TENSOR REMARK 3 S11: -0.2158 S12: 0.0327 S13: -0.2703 REMARK 3 S21: -0.0619 S22: -0.0260 S23: -0.1151 REMARK 3 S31: 0.3780 S32: -0.0495 S33: 0.2118 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 388:405) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1188 5.6585 -12.6413 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.4153 REMARK 3 T33: 0.4285 T12: -0.0635 REMARK 3 T13: -0.0160 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 1.7397 L22: 9.1638 REMARK 3 L33: 7.4522 L12: 0.6210 REMARK 3 L13: 0.7885 L23: 1.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.4269 S12: -0.0647 S13: 0.5000 REMARK 3 S21: 0.2278 S22: -0.0917 S23: -1.2180 REMARK 3 S31: -0.3477 S32: 1.3304 S33: 0.3897 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8KGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.20300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.01900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 3350, 100 MM HEPES (PH 7.2) REMARK 280 AND 200 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.06000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.12000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.09000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 175.15000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.03000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.06000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 140.12000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 175.15000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.09000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.03000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 667 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 719 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 406 REMARK 465 LYS A 407 REMARK 465 ASP A 408 REMARK 465 ASN A 409 REMARK 465 HIS A 410 REMARK 465 LYS A 411 REMARK 465 GLN A 412 REMARK 465 VAL A 413 REMARK 465 ASP A 414 REMARK 465 VAL A 415 REMARK 465 ASP A 416 REMARK 465 LYS A 417 REMARK 465 TYR A 418 REMARK 465 THR A 419 REMARK 465 ARG A 420 REMARK 465 ALA A 421 REMARK 465 ARG A 422 REMARK 465 ASN A 423 REMARK 465 ALA A 424 REMARK 465 GLY A 425 REMARK 465 GLY A 426 REMARK 465 LYS A 427 REMARK 465 ARG A 428 REMARK 465 ALA A 429 REMARK 465 GLN A 430 REMARK 465 ASP A 431 REMARK 465 CYS A 432 REMARK 465 MET A 433 REMARK 465 LEU A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 168 O HOH A 601 1.81 REMARK 500 OG1 THR A 342 O HOH A 602 1.82 REMARK 500 O PRO A 264 O HOH A 603 1.83 REMARK 500 O HOH A 701 O HOH A 715 1.95 REMARK 500 O HOH A 682 O HOH A 710 1.96 REMARK 500 NH1 ARG A 247 O HOH A 604 1.96 REMARK 500 O HOH A 717 O HOH A 720 1.96 REMARK 500 O HOH A 705 O HOH A 714 1.96 REMARK 500 O HOH A 699 O HOH A 707 2.00 REMARK 500 O THR A 267 O HOH A 605 2.01 REMARK 500 O HOH A 679 O HOH A 701 2.08 REMARK 500 OG SER A 395 O HOH A 606 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 106 CD GLU A 106 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 261 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 78.62 39.58 REMARK 500 HIS A 47 44.15 -82.91 REMARK 500 THR A 143 -30.14 -151.43 REMARK 500 VAL A 146 -35.46 -130.42 REMARK 500 ASP A 243 -4.09 73.07 REMARK 500 ALA A 263 62.73 -153.40 REMARK 500 THR A 342 -163.52 -113.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 64 OD1 REMARK 620 2 ANP A 502 O1G 160.2 REMARK 620 3 ANP A 502 O1B 81.1 82.1 REMARK 620 4 ANP A 502 O2A 91.1 95.0 76.1 REMARK 620 5 HOH A 612 O 92.6 103.7 173.2 106.6 REMARK 620 6 HOH A 636 O 84.4 82.0 78.3 154.5 98.7 REMARK 620 N 1 2 3 4 5 DBREF1 8KGS A 1 434 UNP A0A2X0THW2_ASF DBREF2 8KGS A A0A2X0THW2 1 434 SEQADV 8KGS HIS A 435 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 436 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 437 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 438 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 439 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 440 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 441 UNP A0A2X0THW EXPRESSION TAG SEQADV 8KGS HIS A 442 UNP A0A2X0THW EXPRESSION TAG SEQRES 1 A 442 MET GLU ALA PHE GLU ILE SER ASP PHE LYS GLU HIS ALA SEQRES 2 A 442 LYS LYS LYS SER MET TRP ALA GLY ALA LEU ASN LYS VAL SEQRES 3 A 442 THR ILE SER GLY LEU MET GLY VAL PHE THR GLU ASP GLU SEQRES 4 A 442 ASP LEU MET ALA LEU PRO ILE HIS ARG ASP HIS CYS PRO SEQRES 5 A 442 ALA LEU LEU LYS ILE PHE ASP GLU ILE ILE VAL ASN ALA SEQRES 6 A 442 THR ASP HIS GLU ARG ALA CYS HIS ASN LYS THR LYS LYS SEQRES 7 A 442 VAL THR TYR ILE LYS ILE SER PHE ASP LYS GLY VAL PHE SEQRES 8 A 442 SER CYS GLU ASN ASP GLY PRO GLY ILE PRO ILE ALA LYS SEQRES 9 A 442 HIS GLU GLN ALA SER LEU ILE ALA LYS ARG ASP VAL TYR SEQRES 10 A 442 VAL PRO GLU VAL ALA SER CYS HIS PHE LEU ALA GLY THR SEQRES 11 A 442 ASN ILE ASN LYS ALA LYS ASP CYS ILE LYS GLY GLY THR SEQRES 12 A 442 ASN GLY VAL GLY LEU LYS LEU ALA MET VAL HIS SER GLN SEQRES 13 A 442 TRP ALA ILE LEU THR THR ALA ASP GLY ALA GLN LYS TYR SEQRES 14 A 442 VAL GLN HIS ILE ASN GLN ARG LEU ASP ILE ILE GLU PRO SEQRES 15 A 442 PRO THR ILE THR PRO SER ARG GLU MET PHE THR ARG ILE SEQRES 16 A 442 GLU LEU MET PRO VAL TYR GLN GLU LEU GLY TYR ALA GLU SEQRES 17 A 442 PRO LEU SER GLU THR GLU GLN ALA ASP LEU SER ALA TRP SEQRES 18 A 442 ILE TYR LEU ARG ALA CYS GLN CYS ALA ALA TYR VAL GLY SEQRES 19 A 442 LYS GLY THR THR ILE TYR TYR ASN ASP LYS PRO CYS ARG SEQRES 20 A 442 THR GLY SER VAL MET ALA LEU ALA LYS MET TYR THR LEU SEQRES 21 A 442 LEU SER ALA PRO ASN SER THR ILE HIS THR ALA THR ILE SEQRES 22 A 442 LYS ALA ASP ALA LYS PRO TYR SER LEU HIS PRO LEU GLN SEQRES 23 A 442 VAL ALA ALA VAL VAL SER PRO LYS PHE LYS LYS PHE GLU SEQRES 24 A 442 HIS VAL SER VAL ILE ASN GLY VAL ASN CYS VAL LYS GLY SEQRES 25 A 442 GLU HIS VAL THR PHE LEU LYS LYS THR ILE ASN GLU MET SEQRES 26 A 442 VAL VAL LYS LYS PHE GLN GLN THR ILE LYS ASP LYS ASN SEQRES 27 A 442 ARG LYS THR THR LEU ARG ASP SER CYS SER ASN ILE PHE SEQRES 28 A 442 ILE VAL ILE VAL GLY SER ILE PRO GLY ILE GLU TRP THR SEQRES 29 A 442 GLY GLN ARG LYS ASP GLU LEU SER ILE ALA GLU ASN VAL SEQRES 30 A 442 PHE LYS THR HIS TYR SER ILE PRO SER SER PHE LEU THR SEQRES 31 A 442 SER MET THR LYS SER ILE VAL ASP ILE LEU LEU GLN SER SEQRES 32 A 442 ILE SER LYS LYS ASP ASN HIS LYS GLN VAL ASP VAL ASP SEQRES 33 A 442 LYS TYR THR ARG ALA ARG ASN ALA GLY GLY LYS ARG ALA SEQRES 34 A 442 GLN ASP CYS MET LEU HIS HIS HIS HIS HIS HIS HIS HIS HET MG A 501 1 HET ANP A 502 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *121(H2 O) HELIX 1 AA1 ASP A 8 LYS A 16 1 9 HELIX 2 AA2 CYS A 51 HIS A 73 1 23 HELIX 3 AA3 HIS A 105 LYS A 113 1 9 HELIX 4 AA4 TYR A 117 HIS A 125 1 9 HELIX 5 AA5 VAL A 146 HIS A 154 1 9 HELIX 6 AA6 SER A 211 VAL A 233 1 23 HELIX 7 AA7 SER A 250 LEU A 260 1 11 HELIX 8 AA8 PRO A 279 HIS A 283 5 5 HELIX 9 AA9 GLY A 312 ILE A 334 1 23 HELIX 10 AB1 THR A 342 SER A 348 1 7 HELIX 11 AB2 GLU A 375 HIS A 381 1 7 HELIX 12 AB3 PRO A 385 ILE A 404 1 20 SHEET 1 AA1 2 MET A 32 THR A 36 0 SHEET 2 AA1 2 LEU A 41 PRO A 45 -1 O LEU A 44 N GLY A 33 SHEET 1 AA2 3 ILE A 179 ILE A 180 0 SHEET 2 AA2 3 GLN A 167 ASN A 174 -1 N ASN A 174 O ILE A 179 SHEET 3 AA2 3 THR A 184 PRO A 187 -1 O THR A 186 N LYS A 168 SHEET 1 AA3 8 ILE A 179 ILE A 180 0 SHEET 2 AA3 8 GLN A 167 ASN A 174 -1 N ASN A 174 O ILE A 179 SHEET 3 AA3 8 SER A 155 ASP A 164 -1 N LEU A 160 O GLN A 171 SHEET 4 AA3 8 MET A 191 PRO A 199 -1 O ARG A 194 N THR A 161 SHEET 5 AA3 8 VAL A 90 ASN A 95 -1 N PHE A 91 O LEU A 197 SHEET 6 AA3 8 TYR A 81 ASP A 87 -1 N LYS A 83 O GLU A 94 SHEET 7 AA3 8 THR A 238 TYR A 241 1 O TYR A 240 N ILE A 82 SHEET 8 AA3 8 LYS A 244 PRO A 245 -1 O LYS A 244 N TYR A 241 SHEET 1 AA4 5 GLU A 299 ILE A 304 0 SHEET 2 AA4 5 ILE A 350 GLY A 356 1 O ILE A 352 N VAL A 301 SHEET 3 AA4 5 LEU A 285 VAL A 291 -1 N ALA A 288 O VAL A 353 SHEET 4 AA4 5 ILE A 268 ALA A 275 -1 N ILE A 273 O LEU A 285 SHEET 5 AA4 5 TYR A 382 SER A 383 -1 O SER A 383 N LYS A 274 SHEET 1 AA5 2 GLU A 362 TRP A 363 0 SHEET 2 AA5 2 LEU A 371 SER A 372 -1 O SER A 372 N GLU A 362 LINK OD1 ASN A 64 MG MG A 501 1555 1555 2.06 LINK MG MG A 501 O1G ANP A 502 1555 1555 2.08 LINK MG MG A 501 O1B ANP A 502 1555 1555 2.15 LINK MG MG A 501 O2A ANP A 502 1555 1555 2.14 LINK MG MG A 501 O HOH A 612 1555 1555 2.06 LINK MG MG A 501 O HOH A 636 1555 1555 2.11 CISPEP 1 GLU A 208 PRO A 209 0 -2.55 CISPEP 2 LYS A 278 PRO A 279 0 0.31 CRYST1 85.077 85.077 210.180 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011754 0.006786 0.000000 0.00000 SCALE2 0.000000 0.013572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004758 0.00000