HEADER RNA BINDING PROTEIN 21-AUG-23 8KH1 TITLE PHAGE SPO1 PROTEIN GP49 IS A NOVEL RNA BINDING PROTEIN THAT INVOLVES TITLE 2 IN HOST IRON METABOLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GENE 49 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPO1; SOURCE 3 ORGANISM_TAXID: 2884427; SOURCE 4 GENE: 49; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIOPHAGE, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.LIU REVDAT 1 04-SEP-24 8KH1 0 JRNL AUTH B.LIU JRNL TITL PHAGE SPO1 PROTEIN GP49 IS A NOVEL RNA BINDING PROTEIN THAT JRNL TITL 2 INVOLVES IN HOST IRON METABOLISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8KH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040432. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 250 MM NO SODIUM CHLORIDE, 50 MM REMARK 210 NO SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D HNCACO; 3D HCCH-TOCSY; 3D REMARK 210 CCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CNS REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 65 HD21 ASN A 69 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 5 TYR A 55 CE1 TYR A 55 CZ 0.081 REMARK 500 5 TYR A 55 CZ TYR A 55 CE2 -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 13 166.56 70.98 REMARK 500 1 ASN A 15 25.94 46.15 REMARK 500 1 THR A 16 55.53 78.76 REMARK 500 1 GLN A 22 55.44 38.45 REMARK 500 1 PHE A 24 69.74 -69.35 REMARK 500 1 LEU A 25 -30.56 177.02 REMARK 500 1 ASP A 28 -60.47 -95.23 REMARK 500 1 LYS A 47 -75.56 -74.12 REMARK 500 1 SER A 48 34.81 -97.35 REMARK 500 1 TYR A 55 70.13 79.53 REMARK 500 1 ASP A 57 3.25 86.04 REMARK 500 1 ALA A 58 -42.02 -168.39 REMARK 500 1 ASN A 60 4.21 133.69 REMARK 500 1 ASP A 72 -36.98 78.41 REMARK 500 1 ASP A 91 41.40 -97.30 REMARK 500 1 ASP A 107 -27.38 153.45 REMARK 500 1 ILE A 115 60.27 -104.49 REMARK 500 2 ARG A 13 165.23 66.11 REMARK 500 2 ASN A 15 19.98 48.53 REMARK 500 2 THR A 16 53.93 84.46 REMARK 500 2 GLN A 22 56.98 29.44 REMARK 500 2 LEU A 25 -27.85 160.29 REMARK 500 2 TYR A 55 -17.74 96.18 REMARK 500 2 ASP A 57 -0.85 75.54 REMARK 500 2 ALA A 58 -46.46 -160.97 REMARK 500 2 PHE A 59 53.64 -93.92 REMARK 500 2 ASN A 60 1.64 134.38 REMARK 500 2 ASN A 69 -163.15 -106.77 REMARK 500 2 ASP A 72 -23.80 70.77 REMARK 500 2 ASP A 91 36.45 -71.16 REMARK 500 2 ASP A 107 -8.02 95.38 REMARK 500 2 ILE A 115 62.44 -104.66 REMARK 500 2 ASN A 116 101.88 -55.97 REMARK 500 3 ARG A 13 174.52 70.15 REMARK 500 3 ASN A 15 29.65 42.08 REMARK 500 3 THR A 16 45.41 86.53 REMARK 500 3 GLN A 22 66.26 28.82 REMARK 500 3 LEU A 25 -26.26 169.17 REMARK 500 3 LYS A 47 -63.65 -105.96 REMARK 500 3 LYS A 54 70.64 53.33 REMARK 500 3 TYR A 55 -16.56 91.05 REMARK 500 3 ASP A 57 1.05 89.24 REMARK 500 3 ALA A 58 -52.03 -168.07 REMARK 500 3 PHE A 59 48.72 -85.94 REMARK 500 3 ASN A 60 54.93 125.69 REMARK 500 3 ALA A 61 -30.79 -177.73 REMARK 500 3 ASN A 69 -160.34 -100.08 REMARK 500 3 ASP A 72 -37.98 81.03 REMARK 500 3 ASP A 107 -9.36 97.20 REMARK 500 3 ILE A 115 69.08 -102.57 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 28044 RELATED DB: BMRB DBREF 8KH1 A 1 117 UNP O48403 GP49_BPSP1 1 117 SEQRES 1 A 117 MET ILE LYS ALA ALA VAL THR LYS GLU SER LEU TYR ARG SEQRES 2 A 117 MET ASN THR LEU MET GLU ALA PHE GLN GLY PHE LEU GLY SEQRES 3 A 117 LEU ASP LEU GLY GLU PHE THR PHE LYS VAL LYS PRO GLY SEQRES 4 A 117 VAL PHE LEU LEU THR ASP VAL LYS SER TYR LEU ILE GLY SEQRES 5 A 117 ASP LYS TYR ASP ASP ALA PHE ASN ALA LEU ILE ASP PHE SEQRES 6 A 117 VAL LEU ARG ASN ASP ARG ASP ALA VAL GLU GLY THR GLU SEQRES 7 A 117 THR ASP VAL SER ILE ARG LEU GLY LEU SER PRO SER ASP SEQRES 8 A 117 MET VAL VAL LYS ARG GLN ASP LYS THR PHE THR PHE THR SEQRES 9 A 117 HIS GLY ASP LEU GLU PHE GLU VAL HIS TRP ILE ASN LEU HELIX 1 AA1 LEU A 17 GLN A 22 1 6 HELIX 2 AA2 ALA A 61 ASN A 69 1 9 HELIX 3 AA3 SER A 88 MET A 92 5 5 SHEET 1 AA1 6 THR A 33 LYS A 37 0 SHEET 2 AA1 6 VAL A 40 THR A 44 -1 O THR A 44 N THR A 33 SHEET 3 AA1 6 ALA A 5 LYS A 8 -1 N ALA A 5 O LEU A 43 SHEET 4 AA1 6 LEU A 108 ASN A 116 1 O ILE A 115 N VAL A 6 SHEET 5 AA1 6 VAL A 94 HIS A 105 -1 N LYS A 99 O TRP A 114 SHEET 6 AA1 6 THR A 77 ILE A 83 -1 N THR A 79 O ASP A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MASTER 174 0 0 3 6 0 0 6 940 1 0 9 END