data_8KHD # _entry.id 8KHD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8KHD pdb_00008khd 10.2210/pdb8khd/pdb WWPDB D_1300038717 ? ? EMDB EMD-37241 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-04-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8KHD _pdbx_database_status.recvd_initial_deposition_date 2023-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The interface structure of Omicron RBD binding to 5817 Fab' _pdbx_database_related.db_id EMD-37241 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email xiangxi@163.com _pdbx_contact_author.name_first Xiangxi _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0635-278X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cao, L.' 1 ? 'Wang, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 43 _citation.language ? _citation.page_first 113653 _citation.page_last 113653 _citation.title 'Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2023.113653 _citation.pdbx_database_id_PubMed 38175758 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, Y.' 1 ? primary 'Zhang, Z.' 2 ? primary 'Yang, M.' 3 ? primary 'Xiong, X.' 4 ? primary 'Yan, Q.' 5 ? primary 'Cao, L.' 6 ? primary 'Wei, P.' 7 ? primary 'Zhang, Y.' 8 ? primary 'Zhang, L.' 9 ? primary 'Lv, K.' 10 ? primary 'Chen, J.' 11 ? primary 'Liu, X.' 12 ? primary 'Zhao, X.' 13 ? primary 'Xiao, J.' 14 ? primary 'Zhang, S.' 15 ? primary 'Zhu, A.' 16 ? primary 'Gan, M.' 17 ? primary 'Zhang, J.' 18 ? primary 'Cai, R.' 19 ? primary 'Zhuo, J.' 20 ? primary 'Zhang, Y.' 21 ? primary 'Rao, H.' 22 ? primary 'Qu, B.' 23 ? primary 'Zhang, Y.' 24 ? primary 'Chen, L.' 25 ? primary 'Dai, J.' 26 ? primary 'Cheng, L.' 27 ? primary 'Hu, Q.' 28 ? primary 'Chen, Y.' 29 ? primary 'Lv, H.' 30 ? primary 'So, R.T.Y.' 31 ? primary 'Peiris, M.' 32 ? primary 'Zhao, J.' 33 ? primary 'Liu, X.' 34 ? primary 'Mok, C.K.P.' 35 ? primary 'Wang, X.' 36 ? primary 'Zhao, J.' 37 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heavy chain of 5817' 13387.045 1 ? ? ? ? 2 polymer man 'Light chain of 5817' 11470.526 1 ? ? ? ? 3 polymer man 'Spike protein S1' 22836.854 1 ? ? RBD ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVQLVESGGGLVKPGGSLRLSCAASGFSFSDAWMSWVRQAPGKGLEWVGRVSSEIGGGTTDYAAPVKGRFTISRDDSKNT LFLQMSSLKTEDTAVYYCTTGVDIVVMMYADDAFDIWGQGTMVTV ; ;EVQLVESGGGLVKPGGSLRLSCAASGFSFSDAWMSWVRQAPGKGLEWVGRVSSEIGGGTTDYAAPVKGRFTISRDDSKNT LFLQMSSLKTEDTAVYYCTTGVDIVVMMYADDAFDIWGQGTMVTV ; H ? 2 'polypeptide(L)' no no ;ELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGPQAEDE ADYYCTSRDSSGNHVIFGGGTKLTVLGQ ; ;ELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGPQAEDE ADYYCTSRDSSGNHVIFGGGTKLTVLGQ ; J ? 3 'polypeptide(L)' no no ;PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCY FPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; ;PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCY FPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 PHE n 1 28 SER n 1 29 PHE n 1 30 SER n 1 31 ASP n 1 32 ALA n 1 33 TRP n 1 34 MET n 1 35 SER n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 VAL n 1 49 GLY n 1 50 ARG n 1 51 VAL n 1 52 SER n 1 53 SER n 1 54 GLU n 1 55 ILE n 1 56 GLY n 1 57 GLY n 1 58 GLY n 1 59 THR n 1 60 THR n 1 61 ASP n 1 62 TYR n 1 63 ALA n 1 64 ALA n 1 65 PRO n 1 66 VAL n 1 67 LYS n 1 68 GLY n 1 69 ARG n 1 70 PHE n 1 71 THR n 1 72 ILE n 1 73 SER n 1 74 ARG n 1 75 ASP n 1 76 ASP n 1 77 SER n 1 78 LYS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 PHE n 1 83 LEU n 1 84 GLN n 1 85 MET n 1 86 SER n 1 87 SER n 1 88 LEU n 1 89 LYS n 1 90 THR n 1 91 GLU n 1 92 ASP n 1 93 THR n 1 94 ALA n 1 95 VAL n 1 96 TYR n 1 97 TYR n 1 98 CYS n 1 99 THR n 1 100 THR n 1 101 GLY n 1 102 VAL n 1 103 ASP n 1 104 ILE n 1 105 VAL n 1 106 VAL n 1 107 MET n 1 108 MET n 1 109 TYR n 1 110 ALA n 1 111 ASP n 1 112 ASP n 1 113 ALA n 1 114 PHE n 1 115 ASP n 1 116 ILE n 1 117 TRP n 1 118 GLY n 1 119 GLN n 1 120 GLY n 1 121 THR n 1 122 MET n 1 123 VAL n 1 124 THR n 1 125 VAL n 2 1 GLU n 2 2 LEU n 2 3 THR n 2 4 GLN n 2 5 ASP n 2 6 PRO n 2 7 ALA n 2 8 VAL n 2 9 SER n 2 10 VAL n 2 11 ALA n 2 12 LEU n 2 13 GLY n 2 14 GLN n 2 15 THR n 2 16 VAL n 2 17 ARG n 2 18 ILE n 2 19 THR n 2 20 CYS n 2 21 GLN n 2 22 GLY n 2 23 ASP n 2 24 SER n 2 25 LEU n 2 26 ARG n 2 27 SER n 2 28 TYR n 2 29 TYR n 2 30 ALA n 2 31 SER n 2 32 TRP n 2 33 TYR n 2 34 GLN n 2 35 GLN n 2 36 LYS n 2 37 PRO n 2 38 GLY n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 VAL n 2 43 LEU n 2 44 VAL n 2 45 ILE n 2 46 TYR n 2 47 GLY n 2 48 LYS n 2 49 ASN n 2 50 ASN n 2 51 ARG n 2 52 PRO n 2 53 SER n 2 54 GLY n 2 55 ILE n 2 56 PRO n 2 57 ASP n 2 58 ARG n 2 59 PHE n 2 60 SER n 2 61 GLY n 2 62 SER n 2 63 SER n 2 64 SER n 2 65 GLY n 2 66 ASN n 2 67 THR n 2 68 ALA n 2 69 SER n 2 70 LEU n 2 71 THR n 2 72 ILE n 2 73 THR n 2 74 GLY n 2 75 PRO n 2 76 GLN n 2 77 ALA n 2 78 GLU n 2 79 ASP n 2 80 GLU n 2 81 ALA n 2 82 ASP n 2 83 TYR n 2 84 TYR n 2 85 CYS n 2 86 THR n 2 87 SER n 2 88 ARG n 2 89 ASP n 2 90 SER n 2 91 SER n 2 92 GLY n 2 93 ASN n 2 94 HIS n 2 95 VAL n 2 96 ILE n 2 97 PHE n 2 98 GLY n 2 99 GLY n 2 100 GLY n 2 101 THR n 2 102 LYS n 2 103 LEU n 2 104 THR n 2 105 VAL n 2 106 LEU n 2 107 GLY n 2 108 GLN n 3 1 PRO n 3 2 ASN n 3 3 ILE n 3 4 THR n 3 5 ASN n 3 6 LEU n 3 7 CYS n 3 8 PRO n 3 9 PHE n 3 10 ASP n 3 11 GLU n 3 12 VAL n 3 13 PHE n 3 14 ASN n 3 15 ALA n 3 16 THR n 3 17 ARG n 3 18 PHE n 3 19 ALA n 3 20 SER n 3 21 VAL n 3 22 TYR n 3 23 ALA n 3 24 TRP n 3 25 ASN n 3 26 ARG n 3 27 LYS n 3 28 ARG n 3 29 ILE n 3 30 SER n 3 31 ASN n 3 32 CYS n 3 33 VAL n 3 34 ALA n 3 35 ASP n 3 36 TYR n 3 37 SER n 3 38 VAL n 3 39 LEU n 3 40 TYR n 3 41 ASN n 3 42 LEU n 3 43 ALA n 3 44 PRO n 3 45 PHE n 3 46 PHE n 3 47 THR n 3 48 PHE n 3 49 LYS n 3 50 CYS n 3 51 TYR n 3 52 GLY n 3 53 VAL n 3 54 SER n 3 55 PRO n 3 56 THR n 3 57 LYS n 3 58 LEU n 3 59 ASN n 3 60 ASP n 3 61 LEU n 3 62 CYS n 3 63 PHE n 3 64 THR n 3 65 ASN n 3 66 VAL n 3 67 TYR n 3 68 ALA n 3 69 ASP n 3 70 SER n 3 71 PHE n 3 72 VAL n 3 73 ILE n 3 74 ARG n 3 75 GLY n 3 76 ASP n 3 77 GLU n 3 78 VAL n 3 79 ARG n 3 80 GLN n 3 81 ILE n 3 82 ALA n 3 83 PRO n 3 84 GLY n 3 85 GLN n 3 86 THR n 3 87 GLY n 3 88 ASN n 3 89 ILE n 3 90 ALA n 3 91 ASP n 3 92 TYR n 3 93 ASN n 3 94 TYR n 3 95 LYS n 3 96 LEU n 3 97 PRO n 3 98 ASP n 3 99 ASP n 3 100 PHE n 3 101 THR n 3 102 GLY n 3 103 CYS n 3 104 VAL n 3 105 ILE n 3 106 ALA n 3 107 TRP n 3 108 ASN n 3 109 SER n 3 110 ASN n 3 111 LYS n 3 112 LEU n 3 113 ASP n 3 114 SER n 3 115 LYS n 3 116 VAL n 3 117 SER n 3 118 GLY n 3 119 ASN n 3 120 TYR n 3 121 ASN n 3 122 TYR n 3 123 LEU n 3 124 TYR n 3 125 ARG n 3 126 LEU n 3 127 PHE n 3 128 ARG n 3 129 LYS n 3 130 SER n 3 131 ASN n 3 132 LEU n 3 133 LYS n 3 134 PRO n 3 135 PHE n 3 136 GLU n 3 137 ARG n 3 138 ASP n 3 139 ILE n 3 140 SER n 3 141 THR n 3 142 GLU n 3 143 ILE n 3 144 TYR n 3 145 GLN n 3 146 ALA n 3 147 GLY n 3 148 ASN n 3 149 LYS n 3 150 PRO n 3 151 CYS n 3 152 ASN n 3 153 GLY n 3 154 VAL n 3 155 ALA n 3 156 GLY n 3 157 PHE n 3 158 ASN n 3 159 CYS n 3 160 TYR n 3 161 PHE n 3 162 PRO n 3 163 LEU n 3 164 ARG n 3 165 SER n 3 166 TYR n 3 167 SER n 3 168 PHE n 3 169 ARG n 3 170 PRO n 3 171 THR n 3 172 TYR n 3 173 GLY n 3 174 VAL n 3 175 GLY n 3 176 HIS n 3 177 GLN n 3 178 PRO n 3 179 TYR n 3 180 ARG n 3 181 VAL n 3 182 VAL n 3 183 VAL n 3 184 LEU n 3 185 SER n 3 186 PHE n 3 187 GLU n 3 188 LEU n 3 189 LEU n 3 190 HIS n 3 191 ALA n 3 192 PRO n 3 193 ALA n 3 194 THR n 3 195 VAL n 3 196 CYS n 3 197 GLY n 3 198 PRO n 3 199 LYS n 3 200 LYS n 3 201 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 125 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 108 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 201 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU H . n A 1 2 VAL 2 2 2 VAL VAL H . n A 1 3 GLN 3 3 3 GLN GLN H . n A 1 4 LEU 4 4 4 LEU LEU H . n A 1 5 VAL 5 5 5 VAL VAL H . n A 1 6 GLU 6 6 6 GLU GLU H . n A 1 7 SER 7 7 7 SER SER H . n A 1 8 GLY 8 8 8 GLY GLY H . n A 1 9 GLY 9 9 9 GLY GLY H . n A 1 10 GLY 10 10 10 GLY GLY H . n A 1 11 LEU 11 11 11 LEU LEU H . n A 1 12 VAL 12 12 12 VAL VAL H . n A 1 13 LYS 13 13 13 LYS LYS H . n A 1 14 PRO 14 14 14 PRO PRO H . n A 1 15 GLY 15 15 15 GLY GLY H . n A 1 16 GLY 16 16 16 GLY GLY H . n A 1 17 SER 17 17 17 SER SER H . n A 1 18 LEU 18 18 18 LEU LEU H . n A 1 19 ARG 19 19 19 ARG ARG H . n A 1 20 LEU 20 20 20 LEU LEU H . n A 1 21 SER 21 21 21 SER SER H . n A 1 22 CYS 22 22 22 CYS CYS H . n A 1 23 ALA 23 23 23 ALA ALA H . n A 1 24 ALA 24 24 24 ALA ALA H . n A 1 25 SER 25 25 25 SER SER H . n A 1 26 GLY 26 26 26 GLY GLY H . n A 1 27 PHE 27 27 27 PHE PHE H . n A 1 28 SER 28 28 28 SER SER H . n A 1 29 PHE 29 29 29 PHE PHE H . n A 1 30 SER 30 30 30 SER SER H . n A 1 31 ASP 31 31 31 ASP ASP H . n A 1 32 ALA 32 32 32 ALA ALA H . n A 1 33 TRP 33 33 33 TRP TRP H . n A 1 34 MET 34 34 34 MET MET H . n A 1 35 SER 35 35 35 SER SER H . n A 1 36 TRP 36 36 36 TRP TRP H . n A 1 37 VAL 37 37 37 VAL VAL H . n A 1 38 ARG 38 38 38 ARG ARG H . n A 1 39 GLN 39 39 39 GLN GLN H . n A 1 40 ALA 40 40 40 ALA ALA H . n A 1 41 PRO 41 41 41 PRO PRO H . n A 1 42 GLY 42 42 42 GLY GLY H . n A 1 43 LYS 43 43 43 LYS LYS H . n A 1 44 GLY 44 44 44 GLY GLY H . n A 1 45 LEU 45 45 45 LEU LEU H . n A 1 46 GLU 46 46 46 GLU GLU H . n A 1 47 TRP 47 47 47 TRP TRP H . n A 1 48 VAL 48 48 48 VAL VAL H . n A 1 49 GLY 49 49 49 GLY GLY H . n A 1 50 ARG 50 50 50 ARG ARG H . n A 1 51 VAL 51 51 51 VAL VAL H . n A 1 52 SER 52 52 52 SER SER H . n A 1 53 SER 53 53 53 SER SER H . n A 1 54 GLU 54 54 54 GLU GLU H . n A 1 55 ILE 55 55 55 ILE ILE H . n A 1 56 GLY 56 56 56 GLY GLY H . n A 1 57 GLY 57 57 57 GLY GLY H . n A 1 58 GLY 58 58 58 GLY GLY H . n A 1 59 THR 59 59 59 THR THR H . n A 1 60 THR 60 60 60 THR THR H . n A 1 61 ASP 61 61 61 ASP ASP H . n A 1 62 TYR 62 62 62 TYR TYR H . n A 1 63 ALA 63 63 63 ALA ALA H . n A 1 64 ALA 64 64 64 ALA ALA H . n A 1 65 PRO 65 65 65 PRO PRO H . n A 1 66 VAL 66 66 66 VAL VAL H . n A 1 67 LYS 67 67 67 LYS LYS H . n A 1 68 GLY 68 68 68 GLY GLY H . n A 1 69 ARG 69 69 69 ARG ARG H . n A 1 70 PHE 70 70 70 PHE PHE H . n A 1 71 THR 71 71 71 THR THR H . n A 1 72 ILE 72 72 72 ILE ILE H . n A 1 73 SER 73 73 73 SER SER H . n A 1 74 ARG 74 74 74 ARG ARG H . n A 1 75 ASP 75 75 75 ASP ASP H . n A 1 76 ASP 76 76 76 ASP ASP H . n A 1 77 SER 77 77 77 SER SER H . n A 1 78 LYS 78 78 78 LYS LYS H . n A 1 79 ASN 79 79 79 ASN ASN H . n A 1 80 THR 80 80 80 THR THR H . n A 1 81 LEU 81 81 81 LEU LEU H . n A 1 82 PHE 82 82 82 PHE PHE H . n A 1 83 LEU 83 83 83 LEU LEU H . n A 1 84 GLN 84 84 84 GLN GLN H . n A 1 85 MET 85 85 85 MET MET H . n A 1 86 SER 86 86 86 SER SER H . n A 1 87 SER 87 87 87 SER SER H . n A 1 88 LEU 88 88 88 LEU LEU H . n A 1 89 LYS 89 89 89 LYS LYS H . n A 1 90 THR 90 90 90 THR THR H . n A 1 91 GLU 91 91 91 GLU GLU H . n A 1 92 ASP 92 92 92 ASP ASP H . n A 1 93 THR 93 93 93 THR THR H . n A 1 94 ALA 94 94 94 ALA ALA H . n A 1 95 VAL 95 95 95 VAL VAL H . n A 1 96 TYR 96 96 96 TYR TYR H . n A 1 97 TYR 97 97 97 TYR TYR H . n A 1 98 CYS 98 98 98 CYS CYS H . n A 1 99 THR 99 99 99 THR THR H . n A 1 100 THR 100 100 100 THR THR H . n A 1 101 GLY 101 101 101 GLY GLY H . n A 1 102 VAL 102 102 102 VAL VAL H . n A 1 103 ASP 103 103 103 ASP ASP H . n A 1 104 ILE 104 104 104 ILE ILE H . n A 1 105 VAL 105 105 105 VAL VAL H . n A 1 106 VAL 106 106 106 VAL VAL H . n A 1 107 MET 107 107 107 MET MET H . n A 1 108 MET 108 108 108 MET MET H . n A 1 109 TYR 109 109 109 TYR TYR H . n A 1 110 ALA 110 110 110 ALA ALA H . n A 1 111 ASP 111 111 111 ASP ASP H . n A 1 112 ASP 112 112 112 ASP ASP H . n A 1 113 ALA 113 113 113 ALA ALA H . n A 1 114 PHE 114 114 114 PHE PHE H . n A 1 115 ASP 115 115 115 ASP ASP H . n A 1 116 ILE 116 116 116 ILE ILE H . n A 1 117 TRP 117 117 117 TRP TRP H . n A 1 118 GLY 118 118 118 GLY GLY H . n A 1 119 GLN 119 119 119 GLN GLN H . n A 1 120 GLY 120 120 120 GLY GLY H . n A 1 121 THR 121 121 121 THR THR H . n A 1 122 MET 122 122 122 MET MET H . n A 1 123 VAL 123 123 123 VAL VAL H . n A 1 124 THR 124 124 124 THR THR H . n A 1 125 VAL 125 125 125 VAL VAL H . n B 2 1 GLU 1 3 3 GLU GLU J . n B 2 2 LEU 2 4 4 LEU LEU J . n B 2 3 THR 3 5 5 THR THR J . n B 2 4 GLN 4 6 6 GLN GLN J . n B 2 5 ASP 5 7 7 ASP ASP J . n B 2 6 PRO 6 8 8 PRO PRO J . n B 2 7 ALA 7 9 9 ALA ALA J . n B 2 8 VAL 8 10 10 VAL VAL J . n B 2 9 SER 9 11 11 SER SER J . n B 2 10 VAL 10 12 12 VAL VAL J . n B 2 11 ALA 11 13 13 ALA ALA J . n B 2 12 LEU 12 14 14 LEU LEU J . n B 2 13 GLY 13 15 15 GLY GLY J . n B 2 14 GLN 14 16 16 GLN GLN J . n B 2 15 THR 15 17 17 THR THR J . n B 2 16 VAL 16 18 18 VAL VAL J . n B 2 17 ARG 17 19 19 ARG ARG J . n B 2 18 ILE 18 20 20 ILE ILE J . n B 2 19 THR 19 21 21 THR THR J . n B 2 20 CYS 20 22 22 CYS CYS J . n B 2 21 GLN 21 23 23 GLN GLN J . n B 2 22 GLY 22 24 24 GLY GLY J . n B 2 23 ASP 23 25 25 ASP ASP J . n B 2 24 SER 24 26 26 SER SER J . n B 2 25 LEU 25 27 27 LEU LEU J . n B 2 26 ARG 26 28 28 ARG ARG J . n B 2 27 SER 27 29 29 SER SER J . n B 2 28 TYR 28 30 30 TYR TYR J . n B 2 29 TYR 29 31 31 TYR TYR J . n B 2 30 ALA 30 32 32 ALA ALA J . n B 2 31 SER 31 33 33 SER SER J . n B 2 32 TRP 32 34 34 TRP TRP J . n B 2 33 TYR 33 35 35 TYR TYR J . n B 2 34 GLN 34 36 36 GLN GLN J . n B 2 35 GLN 35 37 37 GLN GLN J . n B 2 36 LYS 36 38 38 LYS LYS J . n B 2 37 PRO 37 39 39 PRO PRO J . n B 2 38 GLY 38 40 40 GLY GLY J . n B 2 39 GLN 39 41 41 GLN GLN J . n B 2 40 ALA 40 42 42 ALA ALA J . n B 2 41 PRO 41 43 43 PRO PRO J . n B 2 42 VAL 42 44 44 VAL VAL J . n B 2 43 LEU 43 45 45 LEU LEU J . n B 2 44 VAL 44 46 46 VAL VAL J . n B 2 45 ILE 45 47 47 ILE ILE J . n B 2 46 TYR 46 48 48 TYR TYR J . n B 2 47 GLY 47 49 49 GLY GLY J . n B 2 48 LYS 48 50 50 LYS LYS J . n B 2 49 ASN 49 51 51 ASN ASN J . n B 2 50 ASN 50 52 52 ASN ASN J . n B 2 51 ARG 51 53 53 ARG ARG J . n B 2 52 PRO 52 54 54 PRO PRO J . n B 2 53 SER 53 55 55 SER SER J . n B 2 54 GLY 54 56 56 GLY GLY J . n B 2 55 ILE 55 57 57 ILE ILE J . n B 2 56 PRO 56 58 58 PRO PRO J . n B 2 57 ASP 57 59 59 ASP ASP J . n B 2 58 ARG 58 60 60 ARG ARG J . n B 2 59 PHE 59 61 61 PHE PHE J . n B 2 60 SER 60 62 62 SER SER J . n B 2 61 GLY 61 63 63 GLY GLY J . n B 2 62 SER 62 64 64 SER SER J . n B 2 63 SER 63 65 65 SER SER J . n B 2 64 SER 64 66 66 SER SER J . n B 2 65 GLY 65 67 67 GLY GLY J . n B 2 66 ASN 66 68 68 ASN ASN J . n B 2 67 THR 67 69 69 THR THR J . n B 2 68 ALA 68 70 70 ALA ALA J . n B 2 69 SER 69 71 71 SER SER J . n B 2 70 LEU 70 72 72 LEU LEU J . n B 2 71 THR 71 73 73 THR THR J . n B 2 72 ILE 72 74 74 ILE ILE J . n B 2 73 THR 73 75 75 THR THR J . n B 2 74 GLY 74 76 76 GLY GLY J . n B 2 75 PRO 75 77 77 PRO PRO J . n B 2 76 GLN 76 78 78 GLN GLN J . n B 2 77 ALA 77 79 79 ALA ALA J . n B 2 78 GLU 78 80 80 GLU GLU J . n B 2 79 ASP 79 81 81 ASP ASP J . n B 2 80 GLU 80 82 82 GLU GLU J . n B 2 81 ALA 81 83 83 ALA ALA J . n B 2 82 ASP 82 84 84 ASP ASP J . n B 2 83 TYR 83 85 85 TYR TYR J . n B 2 84 TYR 84 86 86 TYR TYR J . n B 2 85 CYS 85 87 87 CYS CYS J . n B 2 86 THR 86 88 88 THR THR J . n B 2 87 SER 87 89 89 SER SER J . n B 2 88 ARG 88 90 90 ARG ARG J . n B 2 89 ASP 89 91 91 ASP ASP J . n B 2 90 SER 90 92 92 SER SER J . n B 2 91 SER 91 93 93 SER SER J . n B 2 92 GLY 92 94 94 GLY GLY J . n B 2 93 ASN 93 95 95 ASN ASN J . n B 2 94 HIS 94 96 96 HIS HIS J . n B 2 95 VAL 95 97 97 VAL VAL J . n B 2 96 ILE 96 98 98 ILE ILE J . n B 2 97 PHE 97 99 99 PHE PHE J . n B 2 98 GLY 98 100 100 GLY GLY J . n B 2 99 GLY 99 101 101 GLY GLY J . n B 2 100 GLY 100 102 102 GLY GLY J . n B 2 101 THR 101 103 103 THR THR J . n B 2 102 LYS 102 104 104 LYS LYS J . n B 2 103 LEU 103 105 105 LEU LEU J . n B 2 104 THR 104 106 106 THR THR J . n B 2 105 VAL 105 107 107 VAL VAL J . n B 2 106 LEU 106 108 108 LEU LEU J . n B 2 107 GLY 107 109 109 GLY GLY J . n B 2 108 GLN 108 110 110 GLN GLN J . n C 3 1 PRO 1 330 330 PRO PRO C . n C 3 2 ASN 2 331 331 ASN ASN C . n C 3 3 ILE 3 332 332 ILE ILE C . n C 3 4 THR 4 333 333 THR THR C . n C 3 5 ASN 5 334 334 ASN ASN C . n C 3 6 LEU 6 335 335 LEU LEU C . n C 3 7 CYS 7 336 336 CYS CYS C . n C 3 8 PRO 8 337 337 PRO PRO C . n C 3 9 PHE 9 338 338 PHE PHE C . n C 3 10 ASP 10 339 339 ASP ASP C . n C 3 11 GLU 11 340 340 GLU GLU C . n C 3 12 VAL 12 341 341 VAL VAL C . n C 3 13 PHE 13 342 342 PHE PHE C . n C 3 14 ASN 14 343 343 ASN ASN C . n C 3 15 ALA 15 344 344 ALA ALA C . n C 3 16 THR 16 345 345 THR THR C . n C 3 17 ARG 17 346 346 ARG ARG C . n C 3 18 PHE 18 347 347 PHE PHE C . n C 3 19 ALA 19 348 348 ALA ALA C . n C 3 20 SER 20 349 349 SER SER C . n C 3 21 VAL 21 350 350 VAL VAL C . n C 3 22 TYR 22 351 351 TYR TYR C . n C 3 23 ALA 23 352 352 ALA ALA C . n C 3 24 TRP 24 353 353 TRP TRP C . n C 3 25 ASN 25 354 354 ASN ASN C . n C 3 26 ARG 26 355 355 ARG ARG C . n C 3 27 LYS 27 356 356 LYS LYS C . n C 3 28 ARG 28 357 357 ARG ARG C . n C 3 29 ILE 29 358 358 ILE ILE C . n C 3 30 SER 30 359 359 SER SER C . n C 3 31 ASN 31 360 360 ASN ASN C . n C 3 32 CYS 32 361 361 CYS CYS C . n C 3 33 VAL 33 362 362 VAL VAL C . n C 3 34 ALA 34 363 363 ALA ALA C . n C 3 35 ASP 35 364 364 ASP ASP C . n C 3 36 TYR 36 365 365 TYR TYR C . n C 3 37 SER 37 366 366 SER SER C . n C 3 38 VAL 38 367 367 VAL VAL C . n C 3 39 LEU 39 368 368 LEU LEU C . n C 3 40 TYR 40 369 369 TYR TYR C . n C 3 41 ASN 41 370 370 ASN ASN C . n C 3 42 LEU 42 371 371 LEU LEU C . n C 3 43 ALA 43 372 372 ALA ALA C . n C 3 44 PRO 44 373 373 PRO PRO C . n C 3 45 PHE 45 374 374 PHE PHE C . n C 3 46 PHE 46 375 375 PHE PHE C . n C 3 47 THR 47 376 376 THR THR C . n C 3 48 PHE 48 377 377 PHE PHE C . n C 3 49 LYS 49 378 378 LYS LYS C . n C 3 50 CYS 50 379 379 CYS CYS C . n C 3 51 TYR 51 380 380 TYR TYR C . n C 3 52 GLY 52 381 381 GLY GLY C . n C 3 53 VAL 53 382 382 VAL VAL C . n C 3 54 SER 54 383 383 SER SER C . n C 3 55 PRO 55 384 384 PRO PRO C . n C 3 56 THR 56 385 385 THR THR C . n C 3 57 LYS 57 386 386 LYS LYS C . n C 3 58 LEU 58 387 387 LEU LEU C . n C 3 59 ASN 59 388 388 ASN ASN C . n C 3 60 ASP 60 389 389 ASP ASP C . n C 3 61 LEU 61 390 390 LEU LEU C . n C 3 62 CYS 62 391 391 CYS CYS C . n C 3 63 PHE 63 392 392 PHE PHE C . n C 3 64 THR 64 393 393 THR THR C . n C 3 65 ASN 65 394 394 ASN ASN C . n C 3 66 VAL 66 395 395 VAL VAL C . n C 3 67 TYR 67 396 396 TYR TYR C . n C 3 68 ALA 68 397 397 ALA ALA C . n C 3 69 ASP 69 398 398 ASP ASP C . n C 3 70 SER 70 399 399 SER SER C . n C 3 71 PHE 71 400 400 PHE PHE C . n C 3 72 VAL 72 401 401 VAL VAL C . n C 3 73 ILE 73 402 402 ILE ILE C . n C 3 74 ARG 74 403 403 ARG ARG C . n C 3 75 GLY 75 404 404 GLY GLY C . n C 3 76 ASP 76 405 405 ASP ASP C . n C 3 77 GLU 77 406 406 GLU GLU C . n C 3 78 VAL 78 407 407 VAL VAL C . n C 3 79 ARG 79 408 408 ARG ARG C . n C 3 80 GLN 80 409 409 GLN GLN C . n C 3 81 ILE 81 410 410 ILE ILE C . n C 3 82 ALA 82 411 411 ALA ALA C . n C 3 83 PRO 83 412 412 PRO PRO C . n C 3 84 GLY 84 413 413 GLY GLY C . n C 3 85 GLN 85 414 414 GLN GLN C . n C 3 86 THR 86 415 415 THR THR C . n C 3 87 GLY 87 416 416 GLY GLY C . n C 3 88 ASN 88 417 417 ASN ASN C . n C 3 89 ILE 89 418 418 ILE ILE C . n C 3 90 ALA 90 419 419 ALA ALA C . n C 3 91 ASP 91 420 420 ASP ASP C . n C 3 92 TYR 92 421 421 TYR TYR C . n C 3 93 ASN 93 422 422 ASN ASN C . n C 3 94 TYR 94 423 423 TYR TYR C . n C 3 95 LYS 95 424 424 LYS LYS C . n C 3 96 LEU 96 425 425 LEU LEU C . n C 3 97 PRO 97 426 426 PRO PRO C . n C 3 98 ASP 98 427 427 ASP ASP C . n C 3 99 ASP 99 428 428 ASP ASP C . n C 3 100 PHE 100 429 429 PHE PHE C . n C 3 101 THR 101 430 430 THR THR C . n C 3 102 GLY 102 431 431 GLY GLY C . n C 3 103 CYS 103 432 432 CYS CYS C . n C 3 104 VAL 104 433 433 VAL VAL C . n C 3 105 ILE 105 434 434 ILE ILE C . n C 3 106 ALA 106 435 435 ALA ALA C . n C 3 107 TRP 107 436 436 TRP TRP C . n C 3 108 ASN 108 437 437 ASN ASN C . n C 3 109 SER 109 438 438 SER SER C . n C 3 110 ASN 110 439 439 ASN ASN C . n C 3 111 LYS 111 440 440 LYS LYS C . n C 3 112 LEU 112 441 441 LEU LEU C . n C 3 113 ASP 113 442 442 ASP ASP C . n C 3 114 SER 114 443 443 SER SER C . n C 3 115 LYS 115 444 444 LYS LYS C . n C 3 116 VAL 116 445 445 VAL VAL C . n C 3 117 SER 117 446 446 SER SER C . n C 3 118 GLY 118 447 447 GLY GLY C . n C 3 119 ASN 119 448 448 ASN ASN C . n C 3 120 TYR 120 449 449 TYR TYR C . n C 3 121 ASN 121 450 450 ASN ASN C . n C 3 122 TYR 122 451 451 TYR TYR C . n C 3 123 LEU 123 452 452 LEU LEU C . n C 3 124 TYR 124 453 453 TYR TYR C . n C 3 125 ARG 125 454 454 ARG ARG C . n C 3 126 LEU 126 455 455 LEU LEU C . n C 3 127 PHE 127 456 456 PHE PHE C . n C 3 128 ARG 128 457 457 ARG ARG C . n C 3 129 LYS 129 458 458 LYS LYS C . n C 3 130 SER 130 459 459 SER SER C . n C 3 131 ASN 131 460 460 ASN ASN C . n C 3 132 LEU 132 461 461 LEU LEU C . n C 3 133 LYS 133 462 462 LYS LYS C . n C 3 134 PRO 134 463 463 PRO PRO C . n C 3 135 PHE 135 464 464 PHE PHE C . n C 3 136 GLU 136 465 465 GLU GLU C . n C 3 137 ARG 137 466 466 ARG ARG C . n C 3 138 ASP 138 467 467 ASP ASP C . n C 3 139 ILE 139 468 468 ILE ILE C . n C 3 140 SER 140 469 469 SER SER C . n C 3 141 THR 141 470 470 THR THR C . n C 3 142 GLU 142 471 471 GLU GLU C . n C 3 143 ILE 143 472 472 ILE ILE C . n C 3 144 TYR 144 473 473 TYR TYR C . n C 3 145 GLN 145 474 474 GLN GLN C . n C 3 146 ALA 146 475 475 ALA ALA C . n C 3 147 GLY 147 476 476 GLY GLY C . n C 3 148 ASN 148 477 477 ASN ASN C . n C 3 149 LYS 149 478 478 LYS LYS C . n C 3 150 PRO 150 479 479 PRO PRO C . n C 3 151 CYS 151 480 480 CYS CYS C . n C 3 152 ASN 152 481 481 ASN ASN C . n C 3 153 GLY 153 482 482 GLY GLY C . n C 3 154 VAL 154 483 483 VAL VAL C . n C 3 155 ALA 155 484 484 ALA ALA C . n C 3 156 GLY 156 485 485 GLY GLY C . n C 3 157 PHE 157 486 486 PHE PHE C . n C 3 158 ASN 158 487 487 ASN ASN C . n C 3 159 CYS 159 488 488 CYS CYS C . n C 3 160 TYR 160 489 489 TYR TYR C . n C 3 161 PHE 161 490 490 PHE PHE C . n C 3 162 PRO 162 491 491 PRO PRO C . n C 3 163 LEU 163 492 492 LEU LEU C . n C 3 164 ARG 164 493 493 ARG ARG C . n C 3 165 SER 165 494 494 SER SER C . n C 3 166 TYR 166 495 495 TYR TYR C . n C 3 167 SER 167 496 496 SER SER C . n C 3 168 PHE 168 497 497 PHE PHE C . n C 3 169 ARG 169 498 498 ARG ARG C . n C 3 170 PRO 170 499 499 PRO PRO C . n C 3 171 THR 171 500 500 THR THR C . n C 3 172 TYR 172 501 501 TYR TYR C . n C 3 173 GLY 173 502 502 GLY GLY C . n C 3 174 VAL 174 503 503 VAL VAL C . n C 3 175 GLY 175 504 504 GLY GLY C . n C 3 176 HIS 176 505 505 HIS HIS C . n C 3 177 GLN 177 506 506 GLN GLN C . n C 3 178 PRO 178 507 507 PRO PRO C . n C 3 179 TYR 179 508 508 TYR TYR C . n C 3 180 ARG 180 509 509 ARG ARG C . n C 3 181 VAL 181 510 510 VAL VAL C . n C 3 182 VAL 182 511 511 VAL VAL C . n C 3 183 VAL 183 512 512 VAL VAL C . n C 3 184 LEU 184 513 513 LEU LEU C . n C 3 185 SER 185 514 514 SER SER C . n C 3 186 PHE 186 515 515 PHE PHE C . n C 3 187 GLU 187 516 516 GLU GLU C . n C 3 188 LEU 188 517 517 LEU LEU C . n C 3 189 LEU 189 518 518 LEU LEU C . n C 3 190 HIS 190 519 519 HIS HIS C . n C 3 191 ALA 191 520 520 ALA ALA C . n C 3 192 PRO 192 521 521 PRO PRO C . n C 3 193 ALA 193 522 522 ALA ALA C . n C 3 194 THR 194 523 523 THR THR C . n C 3 195 VAL 195 524 524 VAL VAL C . n C 3 196 CYS 196 525 525 CYS CYS C . n C 3 197 GLY 197 526 526 GLY GLY C . n C 3 198 PRO 198 527 527 PRO PRO C . n C 3 199 LYS 199 528 528 LYS LYS C . n C 3 200 LYS 200 529 529 LYS LYS C . n C 3 201 SER 201 530 530 SER SER C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 531 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H LYS 13 ? CG ? A LYS 13 CG 2 1 Y 1 H LYS 13 ? CD ? A LYS 13 CD 3 1 Y 1 H LYS 13 ? CE ? A LYS 13 CE 4 1 Y 1 H LYS 13 ? NZ ? A LYS 13 NZ 5 1 Y 1 H LYS 67 ? CG ? A LYS 67 CG 6 1 Y 1 H LYS 67 ? CD ? A LYS 67 CD 7 1 Y 1 H LYS 67 ? CE ? A LYS 67 CE 8 1 Y 1 H LYS 67 ? NZ ? A LYS 67 NZ 9 1 Y 1 H LYS 78 ? CG ? A LYS 78 CG 10 1 Y 1 H LYS 78 ? CD ? A LYS 78 CD 11 1 Y 1 H LYS 78 ? CE ? A LYS 78 CE 12 1 Y 1 H LYS 78 ? NZ ? A LYS 78 NZ 13 1 Y 1 H GLN 84 ? CG ? A GLN 84 CG 14 1 Y 1 H GLN 84 ? CD ? A GLN 84 CD 15 1 Y 1 H GLN 84 ? OE1 ? A GLN 84 OE1 16 1 Y 1 H GLN 84 ? NE2 ? A GLN 84 NE2 17 1 Y 1 H LYS 89 ? CG ? A LYS 89 CG 18 1 Y 1 H LYS 89 ? CD ? A LYS 89 CD 19 1 Y 1 H LYS 89 ? CE ? A LYS 89 CE 20 1 Y 1 H LYS 89 ? NZ ? A LYS 89 NZ 21 1 Y 1 C PHE 497 ? CG ? C PHE 168 CG 22 1 Y 1 C PHE 497 ? CD1 ? C PHE 168 CD1 23 1 Y 1 C PHE 497 ? CD2 ? C PHE 168 CD2 24 1 Y 1 C PHE 497 ? CE1 ? C PHE 168 CE1 25 1 Y 1 C PHE 497 ? CE2 ? C PHE 168 CE2 26 1 Y 1 C PHE 497 ? CZ ? C PHE 168 CZ 27 1 Y 1 C ARG 498 ? CG ? C ARG 169 CG 28 1 Y 1 C ARG 498 ? CD ? C ARG 169 CD 29 1 Y 1 C ARG 498 ? NE ? C ARG 169 NE 30 1 Y 1 C ARG 498 ? CZ ? C ARG 169 CZ 31 1 Y 1 C ARG 498 ? NH1 ? C ARG 169 NH1 32 1 Y 1 C ARG 498 ? NH2 ? C ARG 169 NH2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8KHD _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8KHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8KHD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8KHD _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3431 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.849 ? 4666 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.795 ? 482 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.050 ? 509 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 606 ? f_plane_restr ? ? # _struct.entry_id 8KHD _struct.title 'The interface structure of Omicron RBD binding to 5817 Fab' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8KHD _struct_keywords.text 'SARS-CoV-2, Omicron, RBD, Fab, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8KHD 8KHD ? 1 ? 1 2 PDB 8KHD 8KHD ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 330 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8KHD H 1 ? 125 ? 8KHD 1 ? 125 ? 1 125 2 2 8KHD J 1 ? 108 ? 8KHD 3 ? 110 ? 3 110 3 3 8KHD C 1 ? 201 ? P0DTC2 330 ? 530 ? 330 530 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 8KHD ASP C 10 ? UNP P0DTC2 GLY 339 variant 339 1 3 8KHD LEU C 42 ? UNP P0DTC2 SER 371 variant 371 2 3 8KHD PRO C 44 ? UNP P0DTC2 SER 373 variant 373 3 3 8KHD PHE C 46 ? UNP P0DTC2 SER 375 variant 375 4 3 8KHD ASN C 88 ? UNP P0DTC2 LYS 417 variant 417 5 3 8KHD LYS C 111 ? UNP P0DTC2 ASN 440 variant 440 6 3 8KHD SER C 117 ? UNP P0DTC2 GLY 446 variant 446 7 3 8KHD ASN C 148 ? UNP P0DTC2 SER 477 variant 477 8 3 8KHD LYS C 149 ? UNP P0DTC2 THR 478 variant 478 9 3 8KHD ALA C 155 ? UNP P0DTC2 GLU 484 variant 484 10 3 8KHD ARG C 164 ? UNP P0DTC2 GLN 493 variant 493 11 3 8KHD SER C 167 ? UNP P0DTC2 GLY 496 variant 496 12 3 8KHD ARG C 169 ? UNP P0DTC2 GLN 498 variant 498 13 3 8KHD TYR C 172 ? UNP P0DTC2 ASN 501 variant 501 14 3 8KHD HIS C 176 ? UNP P0DTC2 TYR 505 variant 505 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 28 ? ALA A 32 ? SER H 28 ALA H 32 5 ? 5 HELX_P HELX_P2 AA2 TYR C 36 ? ASN C 41 ? TYR C 365 ASN C 370 1 ? 6 HELX_P HELX_P3 AA3 ASP C 76 ? ARG C 79 ? ASP C 405 ARG C 408 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 98 SG ? ? H CYS 22 H CYS 98 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? B CYS 20 SG ? ? ? 1_555 B CYS 85 SG ? ? J CYS 22 J CYS 87 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? C CYS 7 SG ? ? ? 1_555 C CYS 32 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf4 disulf ? ? C CYS 50 SG ? ? ? 1_555 C CYS 103 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf5 disulf ? ? C CYS 62 SG ? ? ? 1_555 C CYS 196 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf6 disulf ? ? C CYS 151 SG ? ? ? 1_555 C CYS 159 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale one ? C ASN 14 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 343 C NAG 601 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 2 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 331 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 ILE _struct_mon_prot_cis.pdbx_label_seq_id_2 3 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ILE _struct_mon_prot_cis.pdbx_auth_seq_id_2 332 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.38 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 5 ? AA5 ? 3 ? AA6 ? 5 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? SER A 7 ? GLN H 3 SER H 7 AA1 2 SER A 17 ? SER A 25 ? SER H 17 SER H 25 AA1 3 THR A 80 ? SER A 86 ? THR H 80 SER H 86 AA1 4 PHE A 70 ? ASP A 75 ? PHE H 70 ASP H 75 AA2 1 LEU A 45 ? ARG A 50 ? LEU H 45 ARG H 50 AA2 2 MET A 34 ? GLN A 39 ? MET H 34 GLN H 39 AA2 3 ALA A 94 ? THR A 100 ? ALA H 94 THR H 100 AA2 4 THR A 121 ? VAL A 123 ? THR H 121 VAL H 123 AA3 1 ILE A 104 ? VAL A 106 ? ILE H 104 VAL H 106 AA3 2 GLU C 136 ? ASP C 138 ? GLU C 465 ASP C 467 AA4 1 ALA B 7 ? VAL B 8 ? ALA J 9 VAL J 10 AA4 2 THR B 101 ? LEU B 103 ? THR J 103 LEU J 105 AA4 3 ALA B 81 ? THR B 86 ? ALA J 83 THR J 88 AA4 4 SER B 31 ? GLN B 35 ? SER J 33 GLN J 37 AA4 5 VAL B 42 ? ILE B 45 ? VAL J 44 ILE J 47 AA5 1 VAL B 16 ? GLN B 21 ? VAL J 18 GLN J 23 AA5 2 THR B 67 ? ILE B 72 ? THR J 69 ILE J 74 AA5 3 PHE B 59 ? SER B 64 ? PHE J 61 SER J 66 AA6 1 ASN C 25 ? ILE C 29 ? ASN C 354 ILE C 358 AA6 2 ASN C 65 ? ARG C 74 ? ASN C 394 ARG C 403 AA6 3 PRO C 178 ? GLU C 187 ? PRO C 507 GLU C 516 AA6 4 GLY C 102 ? ASN C 108 ? GLY C 431 ASN C 437 AA6 5 PHE C 45 ? CYS C 50 ? PHE C 374 CYS C 379 AA7 1 LEU C 123 ? ARG C 125 ? LEU C 452 ARG C 454 AA7 2 LEU C 163 ? SER C 165 ? LEU C 492 SER C 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL H 5 O ALA A 23 ? O ALA H 23 AA1 2 3 N LEU A 20 ? N LEU H 20 O LEU A 83 ? O LEU H 83 AA1 3 4 O GLN A 84 ? O GLN H 84 N THR A 71 ? N THR H 71 AA2 1 2 O GLU A 46 ? O GLU H 46 N ARG A 38 ? N ARG H 38 AA2 2 3 N VAL A 37 ? N VAL H 37 O TYR A 97 ? O TYR H 97 AA2 3 4 N TYR A 96 ? N TYR H 96 O THR A 121 ? O THR H 121 AA3 1 2 N VAL A 105 ? N VAL H 105 O ARG C 137 ? O ARG C 466 AA4 1 2 N VAL B 8 ? N VAL J 10 O LYS B 102 ? O LYS J 104 AA4 2 3 O THR B 101 ? O THR J 103 N TYR B 83 ? N TYR J 85 AA4 3 4 O ASP B 82 ? O ASP J 84 N GLN B 35 ? N GLN J 37 AA4 4 5 N GLN B 34 ? N GLN J 36 O VAL B 42 ? O VAL J 44 AA5 1 2 N ILE B 18 ? N ILE J 20 O LEU B 70 ? O LEU J 72 AA5 2 3 O THR B 71 ? O THR J 73 N SER B 60 ? N SER J 62 AA6 1 2 N ASN C 25 ? N ASN C 354 O SER C 70 ? O SER C 399 AA6 2 3 N ILE C 73 ? N ILE C 402 O TYR C 179 ? O TYR C 508 AA6 3 4 O LEU C 184 ? O LEU C 513 N CYS C 103 ? N CYS C 432 AA6 4 5 O VAL C 104 ? O VAL C 433 N LYS C 49 ? N LYS C 378 AA7 1 2 N TYR C 124 ? N TYR C 453 O ARG C 164 ? O ARG C 493 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 379 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 379 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 379 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.01 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 8.81 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 52 ? ? 57.16 -173.18 2 1 THR H 60 ? ? -59.99 109.72 3 1 ASP H 103 ? ? -121.93 -57.62 4 1 MET H 108 ? ? 59.04 -3.02 5 1 PHE H 114 ? ? 60.44 65.36 6 1 VAL J 46 ? ? -123.55 -56.98 7 1 ILE J 98 ? ? 46.42 -43.32 8 1 PHE J 99 ? ? 57.77 -172.94 9 1 ASN C 334 ? ? -94.47 58.61 10 1 ILE C 418 ? ? 65.99 -49.33 11 1 ASP C 428 ? ? -99.21 33.22 12 1 LYS C 478 ? ? 72.75 150.61 13 1 HIS C 519 ? ? -141.08 -1.01 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 C _pdbx_validate_polymer_linkage.auth_comp_id_1 PHE _pdbx_validate_polymer_linkage.auth_seq_id_1 497 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 C _pdbx_validate_polymer_linkage.auth_comp_id_2 ARG _pdbx_validate_polymer_linkage.auth_seq_id_2 498 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 3.25 # _pdbx_entry_details.entry_id 8KHD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8KHD _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8KHD _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 5129 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'The interface structure of Omicron RBD binding to 5817 Fab' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 8KHD _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8KHD _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8KHD _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 45 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8KHD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_