HEADER HYDROLASE 11-MAR-23 8OEP TITLE CRYSTAL STRUCTURE OF THE PTPN3 PDZ DOMAIN BOUND TO THE HPV18 E6 TITLE 2 ONCOPROTEIN C-TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 3; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE H1,PTP-H1; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN E6; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN3, PTPH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS 18; SOURCE 11 ORGANISM_TAXID: 333761 KEYWDS PROTEIN TYROSINE PHOSPHATASE PTPN3, PDZ DOMAINS, PDZ-BINDING MOTIF, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GENERA,B.COLCOMBET-CAZENAVE,A.CROITORU,B.RAYNAL,A.MECHALY, AUTHOR 2 J.CAILLET,A.HAOUZ,N.WOLFF,C.CAILLET-SAGUY REVDAT 2 31-MAY-23 8OEP 1 JRNL REVDAT 1 10-MAY-23 8OEP 0 JRNL AUTH M.GENERA,B.COLCOMBET-CAZENAVE,A.CROITORU,B.RAYNAL,A.MECHALY, JRNL AUTH 2 J.CAILLET,A.HAOUZ,N.WOLFF,C.CAILLET-SAGUY JRNL TITL INTERACTIONS OF THE PROTEIN TYROSINE PHOSPHATASE PTPN3 WITH JRNL TITL 2 VIRAL AND CELLULAR PARTNERS THROUGH ITS PDZ DOMAIN: INSIGHTS JRNL TITL 3 INTO STRUCTURAL DETERMINANTS AND PHOSPHATASE ACTIVITY. JRNL REF FRONT MOL BIOSCI V. 10 92621 2023 JRNL REFN ESSN 2296-889X JRNL PMID 37200868 JRNL DOI 10.3389/FMOLB.2023.1192621 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 23294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7000 - 3.7400 0.98 2947 155 0.1717 0.2115 REMARK 3 2 3.7400 - 2.9700 0.99 2820 148 0.1907 0.2392 REMARK 3 3 2.9700 - 2.6000 1.00 2791 147 0.2139 0.3138 REMARK 3 4 2.6000 - 2.3600 1.00 2770 146 0.2123 0.2437 REMARK 3 5 2.3600 - 2.1900 1.00 2751 145 0.2139 0.2576 REMARK 3 6 2.1900 - 2.0600 1.00 2752 144 0.2339 0.3142 REMARK 3 7 2.0600 - 1.9600 1.00 2715 143 0.2400 0.2654 REMARK 3 8 1.9600 - 1.8700 0.94 2584 136 0.2954 0.3384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.274 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1651 REMARK 3 ANGLE : 1.933 2223 REMARK 3 CHIRALITY : 0.082 252 REMARK 3 PLANARITY : 0.022 297 REMARK 3 DIHEDRAL : 8.057 228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 5 THROUGH 97) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1972 -34.9020 19.6797 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.2868 REMARK 3 T33: 0.2077 T12: 0.0381 REMARK 3 T13: -0.0053 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.9202 L22: 3.2568 REMARK 3 L33: 4.8567 L12: 1.0538 REMARK 3 L13: -1.3749 L23: -0.5446 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: -0.2497 S13: 0.0686 REMARK 3 S21: 0.1242 S22: -0.0356 S23: -0.1762 REMARK 3 S31: 0.0401 S32: 0.3900 S33: -0.1038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5166 -26.5840 31.0748 REMARK 3 T TENSOR REMARK 3 T11: 0.3692 T22: 0.4261 REMARK 3 T33: 0.3131 T12: -0.0049 REMARK 3 T13: 0.0859 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 2.5684 L22: 4.0912 REMARK 3 L33: 3.3699 L12: -3.1785 REMARK 3 L13: -1.3571 L23: 1.0254 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: -1.3972 S13: 0.4946 REMARK 3 S21: 0.6576 S22: 0.2975 S23: 0.1698 REMARK 3 S31: 0.0519 S32: 0.3313 S33: -0.0916 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 6 THROUGH 97) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7558 -23.7425 -3.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2427 REMARK 3 T33: 0.2653 T12: 0.0369 REMARK 3 T13: 0.0322 T23: 0.0657 REMARK 3 L TENSOR REMARK 3 L11: 4.1868 L22: 3.0089 REMARK 3 L33: 3.2759 L12: 0.4703 REMARK 3 L13: 0.1215 L23: -0.8041 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.3021 S13: 0.3584 REMARK 3 S21: -0.1199 S22: 0.0903 S23: 0.0169 REMARK 3 S31: -0.1682 S32: -0.0735 S33: -0.0847 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 6 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0516 -22.4168 -15.0513 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.5341 REMARK 3 T33: 0.3560 T12: 0.0879 REMARK 3 T13: -0.0168 T23: 0.1592 REMARK 3 L TENSOR REMARK 3 L11: 8.9170 L22: 7.3518 REMARK 3 L33: 1.9120 L12: -1.0758 REMARK 3 L13: -2.0983 L23: 1.9993 REMARK 3 S TENSOR REMARK 3 S11: 0.3408 S12: 1.0308 S13: 0.3234 REMARK 3 S21: -0.6979 S22: -0.1475 S23: 0.0688 REMARK 3 S31: -0.6103 S32: -0.6695 S33: -0.1046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 6 through 88 or REMARK 3 resid 90 through 97)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 6 through 88 or REMARK 3 resid 90 through 97)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 31.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.2 M NAI AT PH 7;, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.40000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.60000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.20000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 116.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.40000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.20000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.60000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 116.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 ALA A -15 REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 THR A -10 REMARK 465 GLU A -9 REMARK 465 ASP A -8 REMARK 465 ALA A -7 REMARK 465 SER A -6 REMARK 465 GLN A -5 REMARK 465 TYR A -4 REMARK 465 TYR A -3 REMARK 465 CYS A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 ASN A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 4 REMARK 465 ARG B -1 REMARK 465 GLN B 0 REMARK 465 GLY C -16 REMARK 465 ALA C -15 REMARK 465 MET C -14 REMARK 465 GLY C -13 REMARK 465 SER C -12 REMARK 465 SER C -11 REMARK 465 THR C -10 REMARK 465 GLU C -9 REMARK 465 ASP C -8 REMARK 465 ALA C -7 REMARK 465 SER C -6 REMARK 465 GLN C -5 REMARK 465 TYR C -4 REMARK 465 TYR C -3 REMARK 465 CYS C -2 REMARK 465 ASP C -1 REMARK 465 LYS C 0 REMARK 465 ASN C 1 REMARK 465 ASP C 2 REMARK 465 ASN C 3 REMARK 465 GLY C 4 REMARK 465 ASP C 5 REMARK 465 ARG D -1 REMARK 465 GLN D 0 REMARK 465 GLU D 1 REMARK 465 ARG D 2 REMARK 465 LEU D 3 REMARK 465 GLN D 4 REMARK 465 ARG D 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 97 CB ARG C 97 CG -0.280 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 97 C - N - CA ANGL. DEV. = -23.7 DEGREES REMARK 500 ARG C 97 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG C 97 N - CA - CB ANGL. DEV. = 29.0 DEGREES REMARK 500 ARG C 97 CA - CB - CG ANGL. DEV. = 32.9 DEGREES REMARK 500 ARG C 97 CG - CD - NE ANGL. DEV. = -26.1 DEGREES REMARK 500 ARG C 97 CD - NE - CZ ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG C 97 N - CA - C ANGL. DEV. = -26.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -169.96 -79.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 85 HIS A 86 -144.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 97 0.07 SIDE CHAIN REMARK 500 ARG C 97 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8OEP A -11 97 UNP P26045 PTN3_HUMAN 489 597 DBREF 8OEP B -1 11 UNP P06463 VE6_HPV18 146 158 DBREF 8OEP C -11 97 UNP P26045 PTN3_HUMAN 489 597 DBREF 8OEP D -1 11 UNP P06463 VE6_HPV18 146 158 SEQADV 8OEP GLY A -16 UNP P26045 EXPRESSION TAG SEQADV 8OEP ALA A -15 UNP P26045 EXPRESSION TAG SEQADV 8OEP MET A -14 UNP P26045 EXPRESSION TAG SEQADV 8OEP GLY A -13 UNP P26045 EXPRESSION TAG SEQADV 8OEP SER A -12 UNP P26045 EXPRESSION TAG SEQADV 8OEP GLY C -16 UNP P26045 EXPRESSION TAG SEQADV 8OEP ALA C -15 UNP P26045 EXPRESSION TAG SEQADV 8OEP MET C -14 UNP P26045 EXPRESSION TAG SEQADV 8OEP GLY C -13 UNP P26045 EXPRESSION TAG SEQADV 8OEP SER C -12 UNP P26045 EXPRESSION TAG SEQRES 1 A 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 A 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 A 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 A 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 A 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 A 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 A 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 A 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 A 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 B 13 ARG GLN GLU ARG LEU GLN ARG ARG ARG GLU THR GLN VAL SEQRES 1 C 114 GLY ALA MET GLY SER SER THR GLU ASP ALA SER GLN TYR SEQRES 2 C 114 TYR CYS ASP LYS ASN ASP ASN GLY ASP SER TYR LEU VAL SEQRES 3 C 114 LEU ILE ARG ILE THR PRO ASP GLU ASP GLY LYS PHE GLY SEQRES 4 C 114 PHE ASN LEU LYS GLY GLY VAL ASP GLN LYS MET PRO LEU SEQRES 5 C 114 VAL VAL SER ARG ILE ASN PRO GLU SER PRO ALA ASP THR SEQRES 6 C 114 CYS ILE PRO LYS LEU ASN GLU GLY ASP GLN ILE VAL LEU SEQRES 7 C 114 ILE ASN GLY ARG ASP ILE SER GLU HIS THR HIS ASP GLN SEQRES 8 C 114 VAL VAL MET PHE ILE LYS ALA SER ARG GLU SER HIS SER SEQRES 9 C 114 ARG GLU LEU ALA LEU VAL ILE ARG ARG ARG SEQRES 1 D 13 ARG GLN GLU ARG LEU GLN ARG ARG ARG GLU THR GLN VAL HET NA A 101 1 HETNAM NA SODIUM ION FORMUL 5 NA NA 1+ FORMUL 6 HOH *132(H2 O) HELIX 1 AA1 VAL A 29 LYS A 32 5 4 HELIX 2 AA2 SER A 44 CYS A 49 1 6 HELIX 3 AA3 THR A 71 ARG A 83 1 13 HELIX 4 AA4 VAL C 29 LYS C 32 5 4 HELIX 5 AA5 SER C 44 CYS C 49 1 6 HELIX 6 AA6 THR C 71 ARG C 83 1 13 SHEET 1 AA1 4 TYR A 7 ILE A 13 0 SHEET 2 AA1 4 LEU A 90 ARG A 96 -1 O LEU A 90 N ILE A 13 SHEET 3 AA1 4 GLN A 58 ILE A 62 -1 N VAL A 60 O VAL A 93 SHEET 4 AA1 4 ARG A 65 ASP A 66 -1 O ARG A 65 N ILE A 62 SHEET 1 AA2 3 MET A 33 ILE A 40 0 SHEET 2 AA2 3 PHE A 23 GLY A 28 -1 N LYS A 26 O VAL A 36 SHEET 3 AA2 3 GLU B 8 VAL B 11 -1 O THR B 9 N LEU A 25 SHEET 1 AA3 4 TYR C 7 ILE C 13 0 SHEET 2 AA3 4 LEU C 90 ARG C 96 -1 O LEU C 92 N ILE C 11 SHEET 3 AA3 4 GLN C 58 ILE C 62 -1 N VAL C 60 O VAL C 93 SHEET 4 AA3 4 ARG C 65 ASP C 66 -1 O ARG C 65 N ILE C 62 SHEET 1 AA4 3 MET C 33 ILE C 40 0 SHEET 2 AA4 3 PHE C 23 GLY C 28 -1 N LYS C 26 O VAL C 36 SHEET 3 AA4 3 GLU D 8 VAL D 11 -1 O VAL D 11 N PHE C 23 LINK O ILE A 67 NA NA A 101 1555 1555 2.78 CISPEP 1 ILE A 50 PRO A 51 0 -2.73 CISPEP 2 ILE C 50 PRO C 51 0 -2.45 CRYST1 82.230 82.230 139.200 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012161 0.007021 0.000000 0.00000 SCALE2 0.000000 0.014042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007184 0.00000