data_8OFJ # _entry.id 8OFJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.372 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8OFJ pdb_00008ofj 10.2210/pdb8ofj/pdb WWPDB D_1292129205 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8OFJ _pdbx_database_status.recvd_initial_deposition_date 2023-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Garbers, T.B.' 1 ? 'Neumann, P.' 2 ? 'Ficner, R.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Streptococcus pneumoniae CdaA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garbers, T.B.' 1 ? primary 'Neumann, P.' 2 ? primary 'Ficner, R.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 93.130 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8OFJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.840 _cell.length_a_esd ? _cell.length_b 80.420 _cell.length_b_esd ? _cell.length_c 44.444 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8OFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Diadenylate cyclase' 18397.854 2 2.7.7.85 ? ? ? 2 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DAC,Cyclic-di-AMP synthase,c-di-AMP synthase,Diadenylyl cyclase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSGLFRSKHTTSQKNFYDNLTSTLLRLSTDKIGAIIAIENQDSLESYVNIGYRVTSDFSPELLVTIFYNKQSPLHDG AVIVRDYQIVSVSSYFPMTRQLIDVSYGSRHRSALGLTEKCDAIVFIVSETTGKISVAVRGVIKTLSSNSDRLQDQIIHY LTVKPG ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSGLFRSKHTTSQKNFYDNLTSTLLRLSTDKIGAIIAIENQDSLESYVNIGYRVTSDFSPELLVTIFYNKQSPLHDG AVIVRDYQIVSVSSYFPMTRQLIDVSYGSRHRSALGLTEKCDAIVFIVSETTGKISVAVRGVIKTLSSNSDRLQDQIIHY LTVKPG ; _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLY n 1 7 LEU n 1 8 PHE n 1 9 ARG n 1 10 SER n 1 11 LYS n 1 12 HIS n 1 13 THR n 1 14 THR n 1 15 SER n 1 16 GLN n 1 17 LYS n 1 18 ASN n 1 19 PHE n 1 20 TYR n 1 21 ASP n 1 22 ASN n 1 23 LEU n 1 24 THR n 1 25 SER n 1 26 THR n 1 27 LEU n 1 28 LEU n 1 29 ARG n 1 30 LEU n 1 31 SER n 1 32 THR n 1 33 ASP n 1 34 LYS n 1 35 ILE n 1 36 GLY n 1 37 ALA n 1 38 ILE n 1 39 ILE n 1 40 ALA n 1 41 ILE n 1 42 GLU n 1 43 ASN n 1 44 GLN n 1 45 ASP n 1 46 SER n 1 47 LEU n 1 48 GLU n 1 49 SER n 1 50 TYR n 1 51 VAL n 1 52 ASN n 1 53 ILE n 1 54 GLY n 1 55 TYR n 1 56 ARG n 1 57 VAL n 1 58 THR n 1 59 SER n 1 60 ASP n 1 61 PHE n 1 62 SER n 1 63 PRO n 1 64 GLU n 1 65 LEU n 1 66 LEU n 1 67 VAL n 1 68 THR n 1 69 ILE n 1 70 PHE n 1 71 TYR n 1 72 ASN n 1 73 LYS n 1 74 GLN n 1 75 SER n 1 76 PRO n 1 77 LEU n 1 78 HIS n 1 79 ASP n 1 80 GLY n 1 81 ALA n 1 82 VAL n 1 83 ILE n 1 84 VAL n 1 85 ARG n 1 86 ASP n 1 87 TYR n 1 88 GLN n 1 89 ILE n 1 90 VAL n 1 91 SER n 1 92 VAL n 1 93 SER n 1 94 SER n 1 95 TYR n 1 96 PHE n 1 97 PRO n 1 98 MET n 1 99 THR n 1 100 ARG n 1 101 GLN n 1 102 LEU n 1 103 ILE n 1 104 ASP n 1 105 VAL n 1 106 SER n 1 107 TYR n 1 108 GLY n 1 109 SER n 1 110 ARG n 1 111 HIS n 1 112 ARG n 1 113 SER n 1 114 ALA n 1 115 LEU n 1 116 GLY n 1 117 LEU n 1 118 THR n 1 119 GLU n 1 120 LYS n 1 121 CYS n 1 122 ASP n 1 123 ALA n 1 124 ILE n 1 125 VAL n 1 126 PHE n 1 127 ILE n 1 128 VAL n 1 129 SER n 1 130 GLU n 1 131 THR n 1 132 THR n 1 133 GLY n 1 134 LYS n 1 135 ILE n 1 136 SER n 1 137 VAL n 1 138 ALA n 1 139 VAL n 1 140 ARG n 1 141 GLY n 1 142 VAL n 1 143 ILE n 1 144 LYS n 1 145 THR n 1 146 LEU n 1 147 SER n 1 148 SER n 1 149 ASN n 1 150 SER n 1 151 ASP n 1 152 ARG n 1 153 LEU n 1 154 GLN n 1 155 ASP n 1 156 GLN n 1 157 ILE n 1 158 ILE n 1 159 HIS n 1 160 TYR n 1 161 LEU n 1 162 THR n 1 163 VAL n 1 164 LYS n 1 165 PRO n 1 166 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 166 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dacB, MPN_244, K04_orf202, MP588' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycoplasmoides pneumoniae 19294' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1213463 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DACB_MYCPN _struct_ref.pdbx_db_accession P75528 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLFRSKHTTSQKNFYDNLTSTLLRLSTDKIGAIIAIENQDSLESYVNIGYRVTSDFSPELLVTIFYNKQSPLHDGAVIVR DYQIVSVSSYFPMTRQLIDVSYGSRHRSALGLTEKCDAIVFIVSETTGKISVAVRGVIKTLSSNSDRLQDQIIHYLTVKP G ; _struct_ref.pdbx_align_begin 42 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8OFJ B 6 ? 166 ? P75528 42 ? 202 ? 42 202 2 1 8OFJ A 6 ? 166 ? P75528 42 ? 202 ? 42 202 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8OFJ GLY B 1 ? UNP P75528 ? ? 'expression tag' 37 1 1 8OFJ PRO B 2 ? UNP P75528 ? ? 'expression tag' 38 2 1 8OFJ LEU B 3 ? UNP P75528 ? ? 'expression tag' 39 3 1 8OFJ GLY B 4 ? UNP P75528 ? ? 'expression tag' 40 4 1 8OFJ SER B 5 ? UNP P75528 ? ? 'expression tag' 41 5 2 8OFJ GLY A 1 ? UNP P75528 ? ? 'expression tag' 37 6 2 8OFJ PRO A 2 ? UNP P75528 ? ? 'expression tag' 38 7 2 8OFJ LEU A 3 ? UNP P75528 ? ? 'expression tag' 39 8 2 8OFJ GLY A 4 ? UNP P75528 ? ? 'expression tag' 40 9 2 8OFJ SER A 5 ? UNP P75528 ? ? 'expression tag' 41 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8OFJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 34.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;25% (v/v) PEG MME 2000 0.1M Na-HEPES pH 7.5 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-14 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97626 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97626 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8OFJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.25 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12934 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.68 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.132 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.122 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.25 2.31 ? ? ? ? ? ? 958 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? ? 1 1 0.639 ? ? ? ? 1.308 ? ? ? ? ? ? ? ? ? 2.31 2.37 ? ? ? ? ? ? 907 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.2229999999999999 ? ? 2 1 0.722 ? ? ? ? 1.133 ? ? ? ? ? ? ? ? ? 2.37 2.44 ? ? ? ? ? ? 916 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.031 ? ? 3 1 0.782 ? ? ? ? 0.956 ? ? ? ? ? ? ? ? ? 2.44 2.52 ? ? ? ? ? ? 855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.838 ? ? 4 1 0.81 ? ? ? ? 0.7759999999999999 ? ? ? ? ? ? ? ? ? 2.52 2.6 ? ? ? ? ? ? 880 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.6509999999999999 ? ? 5 1 0.866 ? ? ? ? 0.603 ? ? ? ? ? ? ? ? ? 2.60 2.69 ? ? ? ? ? ? 795 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.5670000000000001 ? ? 6 1 0.893 ? ? ? ? 0.525 ? ? ? ? ? ? ? ? ? 2.69 2.79 ? ? ? ? ? ? 819 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.465 ? ? 7 1 0.9329999999999999 ? ? ? ? 0.43200000000000005 ? ? ? ? ? ? ? ? ? 2.79 2.9 ? ? ? ? ? ? 753 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.348 ? ? 8 1 0.9570000000000001 ? ? ? ? 0.32299999999999995 ? ? ? ? ? ? ? ? ? 2.90 3.03 ? ? ? ? ? ? 731 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.264 ? ? 9 1 0.976 ? ? ? ? 0.245 ? ? ? ? ? ? ? ? ? 3.03 3.18 ? ? ? ? ? ? 718 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.198 ? ? 10 1 0.987 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? ? 3.18 3.35 ? ? ? ? ? ? 646 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.153 ? ? 11 1 0.99 ? ? ? ? 0.142 ? ? ? ? ? ? ? ? ? 3.35 3.56 ? ? ? ? ? ? 648 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.115 ? ? 12 1 0.993 ? ? ? ? 0.106 ? ? ? ? ? ? ? ? ? 3.56 3.8 ? ? ? ? ? ? 596 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.095 ? ? 13 1 0.995 ? ? ? ? 0.08800000000000001 ? ? ? ? ? ? ? ? ? 3.80 4.11 ? ? ? ? ? ? 541 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.069 ? ? 14 1 0.997 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? ? 4.11 4.5 ? ? ? ? ? ? 516 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.05 ? ? 15 1 0.998 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? ? 4.50 5.03 ? ? ? ? ? ? 468 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.051 ? ? 16 1 0.998 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? ? 5.03 5.81 ? ? ? ? ? ? 408 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.057 ? ? 17 1 0.998 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? ? 5.81 7.12 ? ? ? ? ? ? 350 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.054000000000000006 ? ? 18 1 0.998 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? ? 7.12 10.06 ? ? ? ? ? ? 277 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.044000000000000004 ? ? 19 1 0.9990000000000001 ? ? ? ? 0.04 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] -0.028 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.017 _refine.aniso_B[2][2] 0.040 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.010 _refine.B_iso_max ? _refine.B_iso_mean 51.813 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8OFJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.250 _refine.ls_d_res_low 38.854 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12917 _refine.ls_number_reflns_R_free 669 _refine.ls_number_reflns_R_work 12248 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.247 _refine.ls_percent_reflns_R_free 5.179 _refine.ls_R_factor_all 0.201 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2494 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1978 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.450 _refine.pdbx_overall_ESU_R_Free 0.256 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 9.577 _refine.overall_SU_ML 0.226 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2386 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 2440 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 38.854 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 0.012 2424 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 2314 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.085 1.643 3291 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.377 1.569 5317 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.557 5.000 302 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 4.260 5.000 14 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.262 10.000 423 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 15.718 10.000 104 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.051 0.200 401 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 2796 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 548 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.197 0.200 446 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.211 0.200 2070 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.178 0.200 1235 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.077 0.200 1384 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.155 0.200 84 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.180 0.200 11 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.192 0.200 67 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.111 0.200 5 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 3.705 4.977 1214 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.706 4.977 1214 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 5.480 8.936 1514 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 5.478 8.938 1515 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.965 5.766 1210 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.964 5.769 1211 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 7.680 10.298 1777 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 7.678 10.300 1778 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 9.821 53.537 2667 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 9.826 53.545 2667 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.250 2.308 961 . 31 922 99.1675 . 0.309 . . 0.309 . . . . . 0.273 . 20 . 0.939 0.925 0.322 'X-RAY DIFFRACTION' 2.308 2.371 905 . 51 847 99.2265 . 0.284 . . 0.281 . . . . . 0.247 . 20 . 0.950 0.914 0.345 'X-RAY DIFFRACTION' 2.371 2.440 929 . 50 870 99.0312 . 0.266 . . 0.265 . . . . . 0.230 . 20 . 0.956 0.940 0.290 'X-RAY DIFFRACTION' 2.440 2.514 862 . 33 818 98.7239 . 0.249 . . 0.247 . . . . . 0.216 . 20 . 0.963 0.950 0.287 'X-RAY DIFFRACTION' 2.514 2.597 880 . 45 833 99.7727 . 0.224 . . 0.220 . . . . . 0.186 . 20 . 0.970 0.959 0.298 'X-RAY DIFFRACTION' 2.597 2.687 801 . 34 764 99.6255 . 0.218 . . 0.212 . . . . . 0.184 . 20 . 0.973 0.904 0.389 'X-RAY DIFFRACTION' 2.687 2.788 825 . 56 759 98.7879 . 0.226 . . 0.226 . . . . . 0.189 . 20 . 0.970 0.965 0.225 'X-RAY DIFFRACTION' 2.788 2.901 743 . 48 689 99.1925 . 0.206 . . 0.200 . . . . . 0.172 . 20 . 0.975 0.950 0.299 'X-RAY DIFFRACTION' 2.901 3.030 743 . 42 700 99.8654 . 0.205 . . 0.200 . . . . . 0.182 . 20 . 0.976 0.950 0.277 'X-RAY DIFFRACTION' 3.030 3.177 714 . 27 682 99.2997 . 0.205 . . 0.203 . . . . . 0.185 . 20 . 0.978 0.952 0.280 'X-RAY DIFFRACTION' 3.177 3.347 659 . 31 623 99.2413 . 0.199 . . 0.196 . . . . . 0.182 . 20 . 0.978 0.966 0.250 'X-RAY DIFFRACTION' 3.347 3.549 639 . 34 603 99.6870 . 0.209 . . 0.205 . . . . . 0.189 . 20 . 0.979 0.949 0.287 'X-RAY DIFFRACTION' 3.549 3.791 590 . 42 542 98.9830 . 0.200 . . 0.196 . . . . . 0.183 . 20 . 0.982 0.967 0.257 'X-RAY DIFFRACTION' 3.791 4.092 562 . 29 530 99.4662 . 0.194 . . 0.191 . . . . . 0.182 . 20 . 0.983 0.966 0.241 'X-RAY DIFFRACTION' 4.092 4.477 515 . 24 489 99.6116 . 0.156 . . 0.151 . . . . . 0.153 . 20 . 0.988 0.966 0.245 'X-RAY DIFFRACTION' 4.477 4.998 471 . 14 454 99.3631 . 0.148 . . 0.148 . . . . . 0.148 . 20 . 0.988 0.990 0.164 'X-RAY DIFFRACTION' 4.998 5.755 411 . 32 372 98.2968 . 0.178 . . 0.175 . . . . . 0.170 . 20 . 0.982 0.978 0.206 'X-RAY DIFFRACTION' 5.755 7.010 350 . 22 325 99.1429 . 0.198 . . 0.198 . . . . . 0.193 . 20 . 0.980 0.979 0.201 'X-RAY DIFFRACTION' 7.010 9.756 285 . 15 270 100.0000 . 0.169 . . 0.170 . . . . . 0.185 . 20 . 0.983 0.991 0.154 'X-RAY DIFFRACTION' 9.756 38.854 165 . 9 156 100.0000 . 0.198 . . 0.195 . . . . . 0.218 . 20 . 0.978 0.976 0.240 # _struct.entry_id 8OFJ _struct.title 'Mycoplasma pneumoniae CdaM' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8OFJ _struct_keywords.text 'diadenylate cyclase, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 12 ? ASP A 33 ? HIS B 48 ASP B 69 1 ? 22 HELX_P HELX_P2 AA2 LEU A 47 ? ASN A 52 ? LEU B 83 ASN B 88 1 ? 6 HELX_P HELX_P3 AA3 SER A 62 ? ASN A 72 ? SER B 98 ASN B 108 1 ? 11 HELX_P HELX_P4 AA4 SER A 75 ? ASP A 79 ? SER B 111 ASP B 115 5 ? 5 HELX_P HELX_P5 AA5 GLY A 108 ? CYS A 121 ? GLY B 144 CYS B 157 1 ? 14 HELX_P HELX_P6 AA6 ASN A 149 ? LEU A 161 ? ASN B 185 LEU B 197 1 ? 13 HELX_P HELX_P7 AA7 THR B 13 ? ASP B 33 ? THR A 49 ASP A 69 1 ? 21 HELX_P HELX_P8 AA8 LEU B 47 ? ASN B 52 ? LEU A 83 ASN A 88 1 ? 6 HELX_P HELX_P9 AA9 SER B 62 ? TYR B 71 ? SER A 98 TYR A 107 1 ? 10 HELX_P HELX_P10 AB1 SER B 75 ? ASP B 79 ? SER A 111 ASP A 115 5 ? 5 HELX_P HELX_P11 AB2 GLY B 108 ? GLU B 119 ? GLY A 144 GLU A 155 1 ? 12 HELX_P HELX_P12 AB3 ASN B 149 ? VAL B 163 ? ASN A 185 VAL A 199 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 55 ? ASP A 60 ? TYR B 91 ASP B 96 AA1 2 GLN A 88 ? SER A 94 ? GLN B 124 SER B 130 AA1 3 ALA A 81 ? ARG A 85 ? ALA B 117 ARG B 121 AA1 4 ALA A 37 ? ILE A 41 ? ALA B 73 ILE B 77 AA1 5 ILE A 124 ? VAL A 128 ? ILE B 160 VAL B 164 AA1 6 ILE A 135 ? VAL A 139 ? ILE B 171 VAL B 175 AA1 7 VAL A 142 ? THR A 145 ? VAL B 178 THR B 181 AA2 1 TYR B 55 ? ASP B 60 ? TYR A 91 ASP A 96 AA2 2 GLN B 88 ? SER B 94 ? GLN A 124 SER A 130 AA2 3 ALA B 81 ? ARG B 85 ? ALA A 117 ARG A 121 AA2 4 ALA B 37 ? ILE B 41 ? ALA A 73 ILE A 77 AA2 5 ILE B 124 ? VAL B 128 ? ILE A 160 VAL A 164 AA2 6 ILE B 135 ? VAL B 139 ? ILE A 171 VAL A 175 AA2 7 VAL B 142 ? LEU B 146 ? VAL A 178 LEU A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 55 ? N TYR B 91 O VAL A 92 ? O VAL B 128 AA1 2 3 O SER A 94 ? O SER B 130 N ALA A 81 ? N ALA B 117 AA1 3 4 O VAL A 82 ? O VAL B 118 N ALA A 40 ? N ALA B 76 AA1 4 5 N ILE A 39 ? N ILE B 75 O PHE A 126 ? O PHE B 162 AA1 5 6 N ILE A 127 ? N ILE B 163 O SER A 136 ? O SER B 172 AA1 6 7 N VAL A 139 ? N VAL B 175 O VAL A 142 ? O VAL B 178 AA2 1 2 N TYR B 55 ? N TYR A 91 O VAL B 92 ? O VAL A 128 AA2 2 3 O GLN B 88 ? O GLN A 124 N ARG B 85 ? N ARG A 121 AA2 3 4 O VAL B 82 ? O VAL A 118 N ALA B 40 ? N ALA A 76 AA2 4 5 N ILE B 41 ? N ILE A 77 O ILE B 124 ? O ILE A 160 AA2 5 6 N ILE B 127 ? N ILE A 163 O SER B 136 ? O SER A 172 AA2 6 7 N ILE B 135 ? N ILE A 171 O LEU B 146 ? O LEU A 182 # _atom_sites.entry_id 8OFJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.025747 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001408 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012435 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022534 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0487 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 37 ? ? ? B . n A 1 2 PRO 2 38 ? ? ? B . n A 1 3 LEU 3 39 ? ? ? B . n A 1 4 GLY 4 40 ? ? ? B . n A 1 5 SER 5 41 ? ? ? B . n A 1 6 GLY 6 42 ? ? ? B . n A 1 7 LEU 7 43 ? ? ? B . n A 1 8 PHE 8 44 ? ? ? B . n A 1 9 ARG 9 45 ? ? ? B . n A 1 10 SER 10 46 ? ? ? B . n A 1 11 LYS 11 47 47 LYS LYS B . n A 1 12 HIS 12 48 48 HIS HIS B . n A 1 13 THR 13 49 49 THR THR B . n A 1 14 THR 14 50 50 THR THR B . n A 1 15 SER 15 51 51 SER SER B . n A 1 16 GLN 16 52 52 GLN GLN B . n A 1 17 LYS 17 53 53 LYS LYS B . n A 1 18 ASN 18 54 54 ASN ASN B . n A 1 19 PHE 19 55 55 PHE PHE B . n A 1 20 TYR 20 56 56 TYR TYR B . n A 1 21 ASP 21 57 57 ASP ASP B . n A 1 22 ASN 22 58 58 ASN ASN B . n A 1 23 LEU 23 59 59 LEU LEU B . n A 1 24 THR 24 60 60 THR THR B . n A 1 25 SER 25 61 61 SER SER B . n A 1 26 THR 26 62 62 THR THR B . n A 1 27 LEU 27 63 63 LEU LEU B . n A 1 28 LEU 28 64 64 LEU LEU B . n A 1 29 ARG 29 65 65 ARG ARG B . n A 1 30 LEU 30 66 66 LEU LEU B . n A 1 31 SER 31 67 67 SER SER B . n A 1 32 THR 32 68 68 THR THR B . n A 1 33 ASP 33 69 69 ASP ASP B . n A 1 34 LYS 34 70 70 LYS LYS B . n A 1 35 ILE 35 71 71 ILE ILE B . n A 1 36 GLY 36 72 72 GLY GLY B . n A 1 37 ALA 37 73 73 ALA ALA B . n A 1 38 ILE 38 74 74 ILE ILE B . n A 1 39 ILE 39 75 75 ILE ILE B . n A 1 40 ALA 40 76 76 ALA ALA B . n A 1 41 ILE 41 77 77 ILE ILE B . n A 1 42 GLU 42 78 78 GLU GLU B . n A 1 43 ASN 43 79 79 ASN ASN B . n A 1 44 GLN 44 80 80 GLN GLN B . n A 1 45 ASP 45 81 81 ASP ASP B . n A 1 46 SER 46 82 82 SER SER B . n A 1 47 LEU 47 83 83 LEU LEU B . n A 1 48 GLU 48 84 84 GLU GLU B . n A 1 49 SER 49 85 85 SER SER B . n A 1 50 TYR 50 86 86 TYR TYR B . n A 1 51 VAL 51 87 87 VAL VAL B . n A 1 52 ASN 52 88 88 ASN ASN B . n A 1 53 ILE 53 89 89 ILE ILE B . n A 1 54 GLY 54 90 90 GLY GLY B . n A 1 55 TYR 55 91 91 TYR TYR B . n A 1 56 ARG 56 92 92 ARG ARG B . n A 1 57 VAL 57 93 93 VAL VAL B . n A 1 58 THR 58 94 94 THR THR B . n A 1 59 SER 59 95 95 SER SER B . n A 1 60 ASP 60 96 96 ASP ASP B . n A 1 61 PHE 61 97 97 PHE PHE B . n A 1 62 SER 62 98 98 SER SER B . n A 1 63 PRO 63 99 99 PRO PRO B . n A 1 64 GLU 64 100 100 GLU GLU B . n A 1 65 LEU 65 101 101 LEU LEU B . n A 1 66 LEU 66 102 102 LEU LEU B . n A 1 67 VAL 67 103 103 VAL VAL B . n A 1 68 THR 68 104 104 THR THR B . n A 1 69 ILE 69 105 105 ILE ILE B . n A 1 70 PHE 70 106 106 PHE PHE B . n A 1 71 TYR 71 107 107 TYR TYR B . n A 1 72 ASN 72 108 108 ASN ASN B . n A 1 73 LYS 73 109 109 LYS LYS B . n A 1 74 GLN 74 110 110 GLN GLN B . n A 1 75 SER 75 111 111 SER SER B . n A 1 76 PRO 76 112 112 PRO PRO B . n A 1 77 LEU 77 113 113 LEU LEU B . n A 1 78 HIS 78 114 114 HIS HIS B . n A 1 79 ASP 79 115 115 ASP ASP B . n A 1 80 GLY 80 116 116 GLY GLY B . n A 1 81 ALA 81 117 117 ALA ALA B . n A 1 82 VAL 82 118 118 VAL VAL B . n A 1 83 ILE 83 119 119 ILE ILE B . n A 1 84 VAL 84 120 120 VAL VAL B . n A 1 85 ARG 85 121 121 ARG ARG B . n A 1 86 ASP 86 122 122 ASP ASP B . n A 1 87 TYR 87 123 123 TYR TYR B . n A 1 88 GLN 88 124 124 GLN GLN B . n A 1 89 ILE 89 125 125 ILE ILE B . n A 1 90 VAL 90 126 126 VAL VAL B . n A 1 91 SER 91 127 127 SER SER B . n A 1 92 VAL 92 128 128 VAL VAL B . n A 1 93 SER 93 129 129 SER SER B . n A 1 94 SER 94 130 130 SER SER B . n A 1 95 TYR 95 131 131 TYR TYR B . n A 1 96 PHE 96 132 132 PHE PHE B . n A 1 97 PRO 97 133 133 PRO PRO B . n A 1 98 MET 98 134 134 MET MET B . n A 1 99 THR 99 135 135 THR THR B . n A 1 100 ARG 100 136 136 ARG ARG B . n A 1 101 GLN 101 137 137 GLN GLN B . n A 1 102 LEU 102 138 138 LEU LEU B . n A 1 103 ILE 103 139 139 ILE ILE B . n A 1 104 ASP 104 140 140 ASP ASP B . n A 1 105 VAL 105 141 141 VAL VAL B . n A 1 106 SER 106 142 142 SER SER B . n A 1 107 TYR 107 143 143 TYR TYR B . n A 1 108 GLY 108 144 144 GLY GLY B . n A 1 109 SER 109 145 145 SER SER B . n A 1 110 ARG 110 146 146 ARG ARG B . n A 1 111 HIS 111 147 147 HIS HIS B . n A 1 112 ARG 112 148 148 ARG ARG B . n A 1 113 SER 113 149 149 SER SER B . n A 1 114 ALA 114 150 150 ALA ALA B . n A 1 115 LEU 115 151 151 LEU LEU B . n A 1 116 GLY 116 152 152 GLY GLY B . n A 1 117 LEU 117 153 153 LEU LEU B . n A 1 118 THR 118 154 154 THR THR B . n A 1 119 GLU 119 155 155 GLU GLU B . n A 1 120 LYS 120 156 156 LYS LYS B . n A 1 121 CYS 121 157 157 CYS CYS B . n A 1 122 ASP 122 158 158 ASP ASP B . n A 1 123 ALA 123 159 159 ALA ALA B . n A 1 124 ILE 124 160 160 ILE ILE B . n A 1 125 VAL 125 161 161 VAL VAL B . n A 1 126 PHE 126 162 162 PHE PHE B . n A 1 127 ILE 127 163 163 ILE ILE B . n A 1 128 VAL 128 164 164 VAL VAL B . n A 1 129 SER 129 165 165 SER SER B . n A 1 130 GLU 130 166 166 GLU GLU B . n A 1 131 THR 131 167 167 THR THR B . n A 1 132 THR 132 168 168 THR THR B . n A 1 133 GLY 133 169 169 GLY GLY B . n A 1 134 LYS 134 170 170 LYS LYS B . n A 1 135 ILE 135 171 171 ILE ILE B . n A 1 136 SER 136 172 172 SER SER B . n A 1 137 VAL 137 173 173 VAL VAL B . n A 1 138 ALA 138 174 174 ALA ALA B . n A 1 139 VAL 139 175 175 VAL VAL B . n A 1 140 ARG 140 176 176 ARG ARG B . n A 1 141 GLY 141 177 177 GLY GLY B . n A 1 142 VAL 142 178 178 VAL VAL B . n A 1 143 ILE 143 179 179 ILE ILE B . n A 1 144 LYS 144 180 180 LYS LYS B . n A 1 145 THR 145 181 181 THR THR B . n A 1 146 LEU 146 182 182 LEU LEU B . n A 1 147 SER 147 183 183 SER SER B . n A 1 148 SER 148 184 184 SER SER B . n A 1 149 ASN 149 185 185 ASN ASN B . n A 1 150 SER 150 186 186 SER SER B . n A 1 151 ASP 151 187 187 ASP ASP B . n A 1 152 ARG 152 188 188 ARG ARG B . n A 1 153 LEU 153 189 189 LEU LEU B . n A 1 154 GLN 154 190 190 GLN GLN B . n A 1 155 ASP 155 191 191 ASP ASP B . n A 1 156 GLN 156 192 192 GLN GLN B . n A 1 157 ILE 157 193 193 ILE ILE B . n A 1 158 ILE 158 194 194 ILE ILE B . n A 1 159 HIS 159 195 195 HIS HIS B . n A 1 160 TYR 160 196 196 TYR TYR B . n A 1 161 LEU 161 197 197 LEU LEU B . n A 1 162 THR 162 198 198 THR THR B . n A 1 163 VAL 163 199 ? ? ? B . n A 1 164 LYS 164 200 ? ? ? B . n A 1 165 PRO 165 201 ? ? ? B . n A 1 166 GLY 166 202 ? ? ? B . n B 1 1 GLY 1 37 ? ? ? A . n B 1 2 PRO 2 38 ? ? ? A . n B 1 3 LEU 3 39 ? ? ? A . n B 1 4 GLY 4 40 ? ? ? A . n B 1 5 SER 5 41 ? ? ? A . n B 1 6 GLY 6 42 ? ? ? A . n B 1 7 LEU 7 43 ? ? ? A . n B 1 8 PHE 8 44 ? ? ? A . n B 1 9 ARG 9 45 ? ? ? A . n B 1 10 SER 10 46 ? ? ? A . n B 1 11 LYS 11 47 ? ? ? A . n B 1 12 HIS 12 48 48 HIS HIS A . n B 1 13 THR 13 49 49 THR THR A . n B 1 14 THR 14 50 50 THR THR A . n B 1 15 SER 15 51 51 SER SER A . n B 1 16 GLN 16 52 52 GLN GLN A . n B 1 17 LYS 17 53 53 LYS LYS A . n B 1 18 ASN 18 54 54 ASN ASN A . n B 1 19 PHE 19 55 55 PHE PHE A . n B 1 20 TYR 20 56 56 TYR TYR A . n B 1 21 ASP 21 57 57 ASP ASP A . n B 1 22 ASN 22 58 58 ASN ASN A . n B 1 23 LEU 23 59 59 LEU LEU A . n B 1 24 THR 24 60 60 THR THR A . n B 1 25 SER 25 61 61 SER SER A . n B 1 26 THR 26 62 62 THR THR A . n B 1 27 LEU 27 63 63 LEU LEU A . n B 1 28 LEU 28 64 64 LEU LEU A . n B 1 29 ARG 29 65 65 ARG ARG A . n B 1 30 LEU 30 66 66 LEU LEU A . n B 1 31 SER 31 67 67 SER SER A . n B 1 32 THR 32 68 68 THR THR A . n B 1 33 ASP 33 69 69 ASP ASP A . n B 1 34 LYS 34 70 70 LYS LYS A . n B 1 35 ILE 35 71 71 ILE ILE A . n B 1 36 GLY 36 72 72 GLY GLY A . n B 1 37 ALA 37 73 73 ALA ALA A . n B 1 38 ILE 38 74 74 ILE ILE A . n B 1 39 ILE 39 75 75 ILE ILE A . n B 1 40 ALA 40 76 76 ALA ALA A . n B 1 41 ILE 41 77 77 ILE ILE A . n B 1 42 GLU 42 78 78 GLU GLU A . n B 1 43 ASN 43 79 79 ASN ASN A . n B 1 44 GLN 44 80 80 GLN GLN A . n B 1 45 ASP 45 81 81 ASP ASP A . n B 1 46 SER 46 82 82 SER SER A . n B 1 47 LEU 47 83 83 LEU LEU A . n B 1 48 GLU 48 84 84 GLU GLU A . n B 1 49 SER 49 85 85 SER SER A . n B 1 50 TYR 50 86 86 TYR TYR A . n B 1 51 VAL 51 87 87 VAL VAL A . n B 1 52 ASN 52 88 88 ASN ASN A . n B 1 53 ILE 53 89 89 ILE ILE A . n B 1 54 GLY 54 90 90 GLY GLY A . n B 1 55 TYR 55 91 91 TYR TYR A . n B 1 56 ARG 56 92 92 ARG ARG A . n B 1 57 VAL 57 93 93 VAL VAL A . n B 1 58 THR 58 94 94 THR THR A . n B 1 59 SER 59 95 95 SER SER A . n B 1 60 ASP 60 96 96 ASP ASP A . n B 1 61 PHE 61 97 97 PHE PHE A . n B 1 62 SER 62 98 98 SER SER A . n B 1 63 PRO 63 99 99 PRO PRO A . n B 1 64 GLU 64 100 100 GLU GLU A . n B 1 65 LEU 65 101 101 LEU LEU A . n B 1 66 LEU 66 102 102 LEU LEU A . n B 1 67 VAL 67 103 103 VAL VAL A . n B 1 68 THR 68 104 104 THR THR A . n B 1 69 ILE 69 105 105 ILE ILE A . n B 1 70 PHE 70 106 106 PHE PHE A . n B 1 71 TYR 71 107 107 TYR TYR A . n B 1 72 ASN 72 108 108 ASN ASN A . n B 1 73 LYS 73 109 109 LYS LYS A . n B 1 74 GLN 74 110 110 GLN GLN A . n B 1 75 SER 75 111 111 SER SER A . n B 1 76 PRO 76 112 112 PRO PRO A . n B 1 77 LEU 77 113 113 LEU LEU A . n B 1 78 HIS 78 114 114 HIS HIS A . n B 1 79 ASP 79 115 115 ASP ASP A . n B 1 80 GLY 80 116 116 GLY GLY A . n B 1 81 ALA 81 117 117 ALA ALA A . n B 1 82 VAL 82 118 118 VAL VAL A . n B 1 83 ILE 83 119 119 ILE ILE A . n B 1 84 VAL 84 120 120 VAL VAL A . n B 1 85 ARG 85 121 121 ARG ARG A . n B 1 86 ASP 86 122 122 ASP ASP A . n B 1 87 TYR 87 123 123 TYR TYR A . n B 1 88 GLN 88 124 124 GLN GLN A . n B 1 89 ILE 89 125 125 ILE ILE A . n B 1 90 VAL 90 126 126 VAL VAL A . n B 1 91 SER 91 127 127 SER SER A . n B 1 92 VAL 92 128 128 VAL VAL A . n B 1 93 SER 93 129 129 SER SER A . n B 1 94 SER 94 130 130 SER SER A . n B 1 95 TYR 95 131 131 TYR TYR A . n B 1 96 PHE 96 132 132 PHE PHE A . n B 1 97 PRO 97 133 133 PRO PRO A . n B 1 98 MET 98 134 134 MET MET A . n B 1 99 THR 99 135 135 THR THR A . n B 1 100 ARG 100 136 136 ARG ARG A . n B 1 101 GLN 101 137 137 GLN GLN A . n B 1 102 LEU 102 138 138 LEU LEU A . n B 1 103 ILE 103 139 139 ILE ILE A . n B 1 104 ASP 104 140 140 ASP ASP A . n B 1 105 VAL 105 141 141 VAL VAL A . n B 1 106 SER 106 142 142 SER SER A . n B 1 107 TYR 107 143 143 TYR TYR A . n B 1 108 GLY 108 144 144 GLY GLY A . n B 1 109 SER 109 145 145 SER SER A . n B 1 110 ARG 110 146 146 ARG ARG A . n B 1 111 HIS 111 147 147 HIS HIS A . n B 1 112 ARG 112 148 148 ARG ARG A . n B 1 113 SER 113 149 149 SER SER A . n B 1 114 ALA 114 150 150 ALA ALA A . n B 1 115 LEU 115 151 151 LEU LEU A . n B 1 116 GLY 116 152 152 GLY GLY A . n B 1 117 LEU 117 153 153 LEU LEU A . n B 1 118 THR 118 154 154 THR THR A . n B 1 119 GLU 119 155 155 GLU GLU A . n B 1 120 LYS 120 156 156 LYS LYS A . n B 1 121 CYS 121 157 157 CYS CYS A . n B 1 122 ASP 122 158 158 ASP ASP A . n B 1 123 ALA 123 159 159 ALA ALA A . n B 1 124 ILE 124 160 160 ILE ILE A . n B 1 125 VAL 125 161 161 VAL VAL A . n B 1 126 PHE 126 162 162 PHE PHE A . n B 1 127 ILE 127 163 163 ILE ILE A . n B 1 128 VAL 128 164 164 VAL VAL A . n B 1 129 SER 129 165 165 SER SER A . n B 1 130 GLU 130 166 166 GLU GLU A . n B 1 131 THR 131 167 167 THR THR A . n B 1 132 THR 132 168 168 THR THR A . n B 1 133 GLY 133 169 169 GLY GLY A . n B 1 134 LYS 134 170 170 LYS LYS A . n B 1 135 ILE 135 171 171 ILE ILE A . n B 1 136 SER 136 172 172 SER SER A . n B 1 137 VAL 137 173 173 VAL VAL A . n B 1 138 ALA 138 174 174 ALA ALA A . n B 1 139 VAL 139 175 175 VAL VAL A . n B 1 140 ARG 140 176 176 ARG ARG A . n B 1 141 GLY 141 177 177 GLY GLY A . n B 1 142 VAL 142 178 178 VAL VAL A . n B 1 143 ILE 143 179 179 ILE ILE A . n B 1 144 LYS 144 180 180 LYS LYS A . n B 1 145 THR 145 181 181 THR THR A . n B 1 146 LEU 146 182 182 LEU LEU A . n B 1 147 SER 147 183 183 SER SER A . n B 1 148 SER 148 184 184 SER SER A . n B 1 149 ASN 149 185 185 ASN ASN A . n B 1 150 SER 150 186 186 SER SER A . n B 1 151 ASP 151 187 187 ASP ASP A . n B 1 152 ARG 152 188 188 ARG ARG A . n B 1 153 LEU 153 189 189 LEU LEU A . n B 1 154 GLN 154 190 190 GLN GLN A . n B 1 155 ASP 155 191 191 ASP ASP A . n B 1 156 GLN 156 192 192 GLN GLN A . n B 1 157 ILE 157 193 193 ILE ILE A . n B 1 158 ILE 158 194 194 ILE ILE A . n B 1 159 HIS 159 195 195 HIS HIS A . n B 1 160 TYR 160 196 196 TYR TYR A . n B 1 161 LEU 161 197 197 LEU LEU A . n B 1 162 THR 162 198 198 THR THR A . n B 1 163 VAL 163 199 199 VAL VAL A . n B 1 164 LYS 164 200 ? ? ? A . n B 1 165 PRO 165 201 ? ? ? A . n B 1 166 GLY 166 202 ? ? ? A . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email rficner@gwdg.de _pdbx_contact_author.name_first Ficner _pdbx_contact_author.name_last Ralf _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1739-6086 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 301 35 HOH HOH B . C 2 HOH 2 302 56 HOH HOH B . C 2 HOH 3 303 31 HOH HOH B . C 2 HOH 4 304 4 HOH HOH B . C 2 HOH 5 305 6 HOH HOH B . C 2 HOH 6 306 53 HOH HOH B . C 2 HOH 7 307 62 HOH HOH B . C 2 HOH 8 308 23 HOH HOH B . C 2 HOH 9 309 39 HOH HOH B . C 2 HOH 10 310 12 HOH HOH B . C 2 HOH 11 311 63 HOH HOH B . C 2 HOH 12 312 40 HOH HOH B . C 2 HOH 13 313 26 HOH HOH B . C 2 HOH 14 314 11 HOH HOH B . C 2 HOH 15 315 3 HOH HOH B . C 2 HOH 16 316 25 HOH HOH B . C 2 HOH 17 317 7 HOH HOH B . C 2 HOH 18 318 2 HOH HOH B . C 2 HOH 19 319 29 HOH HOH B . C 2 HOH 20 320 54 HOH HOH B . C 2 HOH 21 321 33 HOH HOH B . C 2 HOH 22 322 22 HOH HOH B . C 2 HOH 23 323 21 HOH HOH B . C 2 HOH 24 324 24 HOH HOH B . C 2 HOH 25 325 36 HOH HOH B . C 2 HOH 26 326 19 HOH HOH B . C 2 HOH 27 327 43 HOH HOH B . C 2 HOH 28 328 34 HOH HOH B . C 2 HOH 29 329 42 HOH HOH B . C 2 HOH 30 330 15 HOH HOH B . C 2 HOH 31 331 60 HOH HOH B . C 2 HOH 32 332 61 HOH HOH B . D 2 HOH 1 301 5 HOH HOH A . D 2 HOH 2 302 20 HOH HOH A . D 2 HOH 3 303 59 HOH HOH A . D 2 HOH 4 304 37 HOH HOH A . D 2 HOH 5 305 1 HOH HOH A . D 2 HOH 6 306 16 HOH HOH A . D 2 HOH 7 307 57 HOH HOH A . D 2 HOH 8 308 49 HOH HOH A . D 2 HOH 9 309 10 HOH HOH A . D 2 HOH 10 310 8 HOH HOH A . D 2 HOH 11 311 44 HOH HOH A . D 2 HOH 12 312 18 HOH HOH A . D 2 HOH 13 313 52 HOH HOH A . D 2 HOH 14 314 46 HOH HOH A . D 2 HOH 15 315 9 HOH HOH A . D 2 HOH 16 316 50 HOH HOH A . D 2 HOH 17 317 28 HOH HOH A . D 2 HOH 18 318 30 HOH HOH A . D 2 HOH 19 319 32 HOH HOH A . D 2 HOH 20 320 17 HOH HOH A . D 2 HOH 21 321 38 HOH HOH A . D 2 HOH 22 322 48 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,D 1 2 A,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1240 ? 1 MORE -8 ? 1 'SSA (A^2)' 14760 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -38.8400000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-06-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? 'Garib N. Murshudov' garib@mrc-lmb.cam.ac.uk 2022-11-30 '(un)restrained refinement or idealisation of macromolecular structures' ? ? ? ? ? REFMAC ? ? ? 5.8.0403 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 79 ? ? -116.22 -108.94 2 1 ASN A 79 ? ? -116.37 -113.01 3 1 TYR A 107 ? ? -91.43 33.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ARG 92 ? CD ? A ARG 56 CD 2 1 Y 1 B ARG 92 ? NE ? A ARG 56 NE 3 1 Y 1 B ARG 92 ? CZ ? A ARG 56 CZ 4 1 Y 1 B ARG 92 ? NH1 ? A ARG 56 NH1 5 1 Y 1 B ARG 92 ? NH2 ? A ARG 56 NH2 6 1 Y 1 B ARG 176 ? CD ? A ARG 140 CD 7 1 Y 1 B ARG 176 ? NE ? A ARG 140 NE 8 1 Y 1 B ARG 176 ? CZ ? A ARG 140 CZ 9 1 Y 1 B ARG 176 ? NH1 ? A ARG 140 NH1 10 1 Y 1 B ARG 176 ? NH2 ? A ARG 140 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 37 ? A GLY 1 2 1 Y 1 B PRO 38 ? A PRO 2 3 1 Y 1 B LEU 39 ? A LEU 3 4 1 Y 1 B GLY 40 ? A GLY 4 5 1 Y 1 B SER 41 ? A SER 5 6 1 Y 1 B GLY 42 ? A GLY 6 7 1 Y 1 B LEU 43 ? A LEU 7 8 1 Y 1 B PHE 44 ? A PHE 8 9 1 Y 1 B ARG 45 ? A ARG 9 10 1 Y 1 B SER 46 ? A SER 10 11 1 Y 1 B VAL 199 ? A VAL 163 12 1 Y 1 B LYS 200 ? A LYS 164 13 1 Y 1 B PRO 201 ? A PRO 165 14 1 Y 1 B GLY 202 ? A GLY 166 15 1 Y 1 A GLY 37 ? B GLY 1 16 1 Y 1 A PRO 38 ? B PRO 2 17 1 Y 1 A LEU 39 ? B LEU 3 18 1 Y 1 A GLY 40 ? B GLY 4 19 1 Y 1 A SER 41 ? B SER 5 20 1 Y 1 A GLY 42 ? B GLY 6 21 1 Y 1 A LEU 43 ? B LEU 7 22 1 Y 1 A PHE 44 ? B PHE 8 23 1 Y 1 A ARG 45 ? B ARG 9 24 1 Y 1 A SER 46 ? B SER 10 25 1 Y 1 A LYS 47 ? B LYS 11 26 1 Y 1 A LYS 200 ? B LYS 164 27 1 Y 1 A PRO 201 ? B PRO 165 28 1 Y 1 A GLY 202 ? B GLY 166 # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'SPP 1879' _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #