HEADER VIRAL PROTEIN 16-MAR-23 8OFS TITLE HUMAN ADENOVIRUS TYPE 30 FIBER-KNOB PROTEIN COMPLEXED WITH SIALIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 30; SOURCE 3 ORGANISM_TAXID: 46932; SOURCE 4 STRAIN: 30; SOURCE 5 GENE: L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOVIRUS, FIBER KNOB, AD25, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,A.L.PARKER,R.M.MUNDY,A.T.BAKER REVDAT 3 08-MAY-24 8OFS 1 JRNL REVDAT 2 11-OCT-23 8OFS 1 JRNL REVDAT 1 20-SEP-23 8OFS 0 JRNL AUTH R.M.MUNDY,A.T.BAKER,E.A.BATES,T.G.CUNLIFFE, JRNL AUTH 2 A.TEIJEIRA-CRESPO,E.MOSES,P.J.RIZKALLAH,A.L.PARKER JRNL TITL BROAD SIALIC ACID USAGE AMONGST SPECIES D HUMAN ADENOVIRUS. JRNL REF NPJ VIRUSES V. 1 1 2023 JRNL REFN ESSN 2948-1767 JRNL PMID 38665237 JRNL DOI 10.1038/S44298-023-00001-5 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 933 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.5120 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.5320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 130.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.09000 REMARK 3 B22 (A**2) : -2.61000 REMARK 3 B33 (A**2) : 9.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.405 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.768 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 107.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4806 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4447 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6545 ; 1.222 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10342 ; 1.060 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 598 ; 9.450 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;42.332 ;26.567 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;18.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 661 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5425 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1003 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2401 ; 3.074 ; 6.741 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2400 ; 3.074 ; 6.740 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2996 ; 5.000 ;10.106 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2997 ; 4.999 ;10.106 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2405 ; 2.577 ; 6.842 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2406 ; 2.577 ; 6.842 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3550 ; 4.411 ;10.186 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5080 ; 7.349 ;77.611 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5081 ; 7.348 ;77.610 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 5783 0.12 0.05 REMARK 3 2 A C 5746 0.12 0.05 REMARK 3 3 B C 5783 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 22.983 -19.243 7.353 REMARK 3 T TENSOR REMARK 3 T11: 0.5475 T22: 0.5395 REMARK 3 T33: 0.6017 T12: -0.0231 REMARK 3 T13: 0.2815 T23: -0.1354 REMARK 3 L TENSOR REMARK 3 L11: 5.3041 L22: 7.3979 REMARK 3 L33: 6.2044 L12: -0.0488 REMARK 3 L13: -1.5448 L23: -2.3859 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 1.6601 S13: -0.1527 REMARK 3 S21: -0.9354 S22: 0.1118 S23: -0.0236 REMARK 3 S31: 0.7206 S32: -0.4918 S33: -0.1024 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 383 REMARK 3 ORIGIN FOR THE GROUP (A): 20.394 1.936 23.919 REMARK 3 T TENSOR REMARK 3 T11: 0.4218 T22: 0.0626 REMARK 3 T33: 0.9029 T12: 0.0385 REMARK 3 T13: 0.3464 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 8.3017 L22: 4.7776 REMARK 3 L33: 5.3087 L12: -0.3878 REMARK 3 L13: -0.9803 L23: -1.4482 REMARK 3 S TENSOR REMARK 3 S11: 0.2526 S12: -0.1267 S13: 1.4271 REMARK 3 S21: 0.2698 S22: 0.1831 S23: 0.4161 REMARK 3 S31: -0.5158 S32: -0.5111 S33: -0.4357 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 183 C 382 REMARK 3 ORIGIN FOR THE GROUP (A): 1.671 -17.568 23.861 REMARK 3 T TENSOR REMARK 3 T11: 0.2903 T22: 0.4176 REMARK 3 T33: 1.0482 T12: -0.1797 REMARK 3 T13: 0.3210 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 6.3067 L22: 4.1231 REMARK 3 L33: 7.4716 L12: -0.6608 REMARK 3 L13: 1.7777 L23: -0.1719 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.5929 S13: -0.2931 REMARK 3 S21: -0.2605 S22: 0.0282 S23: 0.8655 REMARK 3 S31: 0.6575 S32: -1.3540 S33: 0.0321 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 28.616 -20.519 26.108 REMARK 3 T TENSOR REMARK 3 T11: 0.5780 T22: 0.7621 REMARK 3 T33: 0.8330 T12: -0.1647 REMARK 3 T13: 0.4242 T23: 0.0976 REMARK 3 L TENSOR REMARK 3 L11: 58.4853 L22: 58.2362 REMARK 3 L33: 27.3378 L12: -58.3596 REMARK 3 L13: -39.9854 L23: 39.8986 REMARK 3 S TENSOR REMARK 3 S11: 1.0047 S12: 1.7998 S13: -1.2128 REMARK 3 S21: -0.9903 S22: -1.8346 S23: 1.2075 REMARK 3 S31: -0.6920 S32: -1.2135 S33: 0.8299 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 401 C 401 REMARK 3 ORIGIN FOR THE GROUP (A): 23.169 -15.183 34.433 REMARK 3 T TENSOR REMARK 3 T11: 1.1042 T22: 1.2134 REMARK 3 T33: 6.3200 T12: 0.2964 REMARK 3 T13: 0.5337 T23: 0.6129 REMARK 3 L TENSOR REMARK 3 L11: 204.3586 L22: 652.0749 REMARK 3 L33: 60.9105 L12: 339.9700 REMARK 3 L13: 75.1548 L23: 71.3883 REMARK 3 S TENSOR REMARK 3 S11: 1.9972 S12: -4.2939 S13: 8.9909 REMARK 3 S21: 7.7293 S22: -13.0551 S23: 2.7769 REMARK 3 S31: -2.0014 S32: 2.0500 S33: 11.0579 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 19.434 -24.787 30.002 REMARK 3 T TENSOR REMARK 3 T11: 0.8113 T22: 0.6620 REMARK 3 T33: 1.0637 T12: -0.2845 REMARK 3 T13: -0.1648 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 6.5988 L22: 108.7794 REMARK 3 L33: 75.0535 L12: 18.7339 REMARK 3 L13: 14.6953 L23: -6.7449 REMARK 3 S TENSOR REMARK 3 S11: -0.4496 S12: 0.5800 S13: 0.5439 REMARK 3 S21: -1.5956 S22: 2.3038 S23: 4.9360 REMARK 3 S31: -0.4873 S32: 0.7048 S33: -1.8542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8OFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292128964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 62.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MMT [MALIC ACID, MES, TRIS], 25% REMARK 280 W/V PEG 1500, PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 383 REMARK 465 ASN A 384 REMARK 465 GLU A 385 REMARK 465 ASN B 384 REMARK 465 GLU B 385 REMARK 465 LYS C 383 REMARK 465 ASN C 384 REMARK 465 GLU C 385 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 207 O GLU C 309 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR B 305 OG1 THR C 343 2556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 185 -12.08 89.22 REMARK 500 THR A 190 -156.99 -76.48 REMARK 500 LYS A 204 55.49 33.33 REMARK 500 TYR A 270 45.69 -109.66 REMARK 500 LYS A 276 -136.29 49.67 REMARK 500 SER A 278 -149.40 -120.89 REMARK 500 ALA A 287 45.32 -159.05 REMARK 500 PRO A 289 -19.41 -46.03 REMARK 500 TYR A 297 69.69 -118.87 REMARK 500 ILE A 301 -45.79 -156.08 REMARK 500 ALA A 306 76.12 -162.64 REMARK 500 GLU A 381 -151.03 -179.31 REMARK 500 THR B 190 -157.25 -80.27 REMARK 500 LYS B 204 54.35 34.54 REMARK 500 TYR B 270 42.22 -109.22 REMARK 500 LYS B 276 -137.92 47.34 REMARK 500 SER B 278 -149.08 -120.38 REMARK 500 ALA B 287 45.15 -158.13 REMARK 500 TYR B 297 69.98 -119.31 REMARK 500 ALA B 306 77.02 -161.01 REMARK 500 ASN B 307 -77.06 -87.66 REMARK 500 ASP B 379 -147.24 -101.28 REMARK 500 ALA B 380 63.44 -154.07 REMARK 500 GLU B 381 -132.02 66.45 REMARK 500 THR C 190 -157.98 -75.90 REMARK 500 LYS C 204 55.35 37.47 REMARK 500 SER C 206 139.76 -171.07 REMARK 500 LYS C 276 -132.86 47.38 REMARK 500 SER C 278 -147.12 -122.58 REMARK 500 ALA C 287 44.88 -158.91 REMARK 500 TYR C 297 70.28 -120.00 REMARK 500 ALA C 306 117.70 -175.90 REMARK 500 PHE C 366 90.29 -69.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 312 SER B 313 149.03 REMARK 500 ASP C 205 SER C 206 -146.29 REMARK 500 GLU C 381 ASP C 382 145.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OFS A 183 385 UNP M0QTV3 M0QTV3_9ADEN 183 385 DBREF 8OFS B 183 385 UNP M0QTV3 M0QTV3_9ADEN 183 385 DBREF 8OFS C 183 385 UNP M0QTV3 M0QTV3_9ADEN 183 385 SEQADV 8OFS LYS A 185 UNP M0QTV3 ARG 185 CONFLICT SEQADV 8OFS LEU A 186 UNP M0QTV3 ARG 186 CONFLICT SEQADV 8OFS LYS B 185 UNP M0QTV3 ARG 185 CONFLICT SEQADV 8OFS LEU B 186 UNP M0QTV3 ARG 186 CONFLICT SEQADV 8OFS LYS C 185 UNP M0QTV3 ARG 185 CONFLICT SEQADV 8OFS LEU C 186 UNP M0QTV3 ARG 186 CONFLICT SEQRES 1 A 203 ASN ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER SEQRES 2 A 203 PRO ASN CYS LYS VAL SER GLU GLU LYS ASP SER LYS LEU SEQRES 3 A 203 THR LEU VAL LEU THR LYS CYS GLY SER GLN ILE LEU ALA SEQRES 4 A 203 SER VAL SER LEU LEU VAL VAL LYS GLY LYS PHE ALA ASN SEQRES 5 A 203 ILE ASN ASN GLU THR ASN PRO GLY GLU ASP TYR LYS LYS SEQRES 6 A 203 PHE SER VAL LYS LEU LEU PHE ASP ALA ASN GLY LYS LEU SEQRES 7 A 203 LEU THR GLY SER SER LEU ASP GLY ASN TYR TRP ASN TYR SEQRES 8 A 203 LYS ASN LYS ASP SER VAL ILE GLY SER PRO TYR GLU ASN SEQRES 9 A 203 ALA VAL PRO PHE MET PRO ASN SER THR ALA TYR PRO LYS SEQRES 10 A 203 ILE ILE ASN ASN GLY THR ALA ASN PRO GLU ASP LYS LYS SEQRES 11 A 203 SER ALA ALA LYS LYS THR ILE VAL THR ASN VAL TYR LEU SEQRES 12 A 203 GLY GLY ASP ALA GLY GLN PRO VAL ALA THR THR VAL SER SEQRES 13 A 203 PHE ASN LYS GLU THR GLU SER ASN CYS VAL TYR SER ILE SEQRES 14 A 203 THR PHE ASP PHE ALA TRP ASN LYS THR TYR LYS ASN VAL SEQRES 15 A 203 PRO PHE ASP SER SER SER LEU THR PHE SER TYR ILE ALA SEQRES 16 A 203 GLN ASP ALA GLU ASP LYS ASN GLU SEQRES 1 B 203 ASN ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER SEQRES 2 B 203 PRO ASN CYS LYS VAL SER GLU GLU LYS ASP SER LYS LEU SEQRES 3 B 203 THR LEU VAL LEU THR LYS CYS GLY SER GLN ILE LEU ALA SEQRES 4 B 203 SER VAL SER LEU LEU VAL VAL LYS GLY LYS PHE ALA ASN SEQRES 5 B 203 ILE ASN ASN GLU THR ASN PRO GLY GLU ASP TYR LYS LYS SEQRES 6 B 203 PHE SER VAL LYS LEU LEU PHE ASP ALA ASN GLY LYS LEU SEQRES 7 B 203 LEU THR GLY SER SER LEU ASP GLY ASN TYR TRP ASN TYR SEQRES 8 B 203 LYS ASN LYS ASP SER VAL ILE GLY SER PRO TYR GLU ASN SEQRES 9 B 203 ALA VAL PRO PHE MET PRO ASN SER THR ALA TYR PRO LYS SEQRES 10 B 203 ILE ILE ASN ASN GLY THR ALA ASN PRO GLU ASP LYS LYS SEQRES 11 B 203 SER ALA ALA LYS LYS THR ILE VAL THR ASN VAL TYR LEU SEQRES 12 B 203 GLY GLY ASP ALA GLY GLN PRO VAL ALA THR THR VAL SER SEQRES 13 B 203 PHE ASN LYS GLU THR GLU SER ASN CYS VAL TYR SER ILE SEQRES 14 B 203 THR PHE ASP PHE ALA TRP ASN LYS THR TYR LYS ASN VAL SEQRES 15 B 203 PRO PHE ASP SER SER SER LEU THR PHE SER TYR ILE ALA SEQRES 16 B 203 GLN ASP ALA GLU ASP LYS ASN GLU SEQRES 1 C 203 ASN ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER SEQRES 2 C 203 PRO ASN CYS LYS VAL SER GLU GLU LYS ASP SER LYS LEU SEQRES 3 C 203 THR LEU VAL LEU THR LYS CYS GLY SER GLN ILE LEU ALA SEQRES 4 C 203 SER VAL SER LEU LEU VAL VAL LYS GLY LYS PHE ALA ASN SEQRES 5 C 203 ILE ASN ASN GLU THR ASN PRO GLY GLU ASP TYR LYS LYS SEQRES 6 C 203 PHE SER VAL LYS LEU LEU PHE ASP ALA ASN GLY LYS LEU SEQRES 7 C 203 LEU THR GLY SER SER LEU ASP GLY ASN TYR TRP ASN TYR SEQRES 8 C 203 LYS ASN LYS ASP SER VAL ILE GLY SER PRO TYR GLU ASN SEQRES 9 C 203 ALA VAL PRO PHE MET PRO ASN SER THR ALA TYR PRO LYS SEQRES 10 C 203 ILE ILE ASN ASN GLY THR ALA ASN PRO GLU ASP LYS LYS SEQRES 11 C 203 SER ALA ALA LYS LYS THR ILE VAL THR ASN VAL TYR LEU SEQRES 12 C 203 GLY GLY ASP ALA GLY GLN PRO VAL ALA THR THR VAL SER SEQRES 13 C 203 PHE ASN LYS GLU THR GLU SER ASN CYS VAL TYR SER ILE SEQRES 14 C 203 THR PHE ASP PHE ALA TRP ASN LYS THR TYR LYS ASN VAL SEQRES 15 C 203 PRO PHE ASP SER SER SER LEU THR PHE SER TYR ILE ALA SEQRES 16 C 203 GLN ASP ALA GLU ASP LYS ASN GLU HET SLB A 401 21 HET SLB B 401 21 HET SLB C 401 21 HETNAM SLB N-ACETYL-BETA-NEURAMINIC ACID HETSYN SLB N-ACETYLNEURAMINIC ACID; SIALIC ACID; O-SIALIC ACID; 5- HETSYN 2 SLB N-ACETYL-BETA-D-NEURAMINIC ACID; BETA-SIALIC ACID FORMUL 4 SLB 3(C11 H19 N O9) HELIX 1 AA1 GLY A 242 TYR A 245 5 4 HELIX 2 AA2 ALA A 287 MET A 291 5 5 HELIX 3 AA3 ASN A 307 LYS A 311 5 5 HELIX 4 AA4 ALA A 314 LYS A 316 5 3 HELIX 5 AA5 GLY A 326 ASP A 328 5 3 HELIX 6 AA6 THR A 343 CYS A 347 5 5 HELIX 7 AA7 GLY B 242 TYR B 245 5 4 HELIX 8 AA8 ALA B 287 MET B 291 5 5 HELIX 9 AA9 ALA B 314 LYS B 316 5 3 HELIX 10 AB1 GLY B 326 ASP B 328 5 3 HELIX 11 AB2 THR B 343 CYS B 347 5 5 HELIX 12 AB3 GLY C 242 TYR C 245 5 4 HELIX 13 AB4 ALA C 287 MET C 291 5 5 HELIX 14 AB5 ASN C 307 LYS C 311 5 5 HELIX 15 AB6 ALA C 314 LYS C 316 5 3 HELIX 16 AB7 GLY C 326 ASP C 328 5 3 HELIX 17 AB8 THR C 343 CYS C 347 5 5 SHEET 1 AA1 6 SER A 278 VAL A 279 0 SHEET 2 AA1 6 ASN A 272 ASN A 275 -1 N ASN A 275 O SER A 278 SHEET 3 AA1 6 THR A 187 TRP A 189 -1 N TRP A 189 O ASN A 272 SHEET 4 AA1 6 SER A 206 THR A 213 -1 O LEU A 212 N LEU A 188 SHEET 5 AA1 6 GLN A 218 VAL A 227 -1 O LEU A 220 N THR A 213 SHEET 6 AA1 6 LEU A 371 ILE A 376 -1 O PHE A 373 N ALA A 221 SHEET 1 AA2 4 LYS A 247 PHE A 254 0 SHEET 2 AA2 4 TYR A 349 ALA A 356 -1 O PHE A 353 N VAL A 250 SHEET 3 AA2 4 PRO A 332 PHE A 339 -1 N THR A 336 O ASP A 354 SHEET 4 AA2 4 THR A 318 TYR A 324 -1 N VAL A 323 O VAL A 333 SHEET 1 AA3 6 SER B 278 VAL B 279 0 SHEET 2 AA3 6 ASN B 272 ASN B 275 -1 N ASN B 275 O SER B 278 SHEET 3 AA3 6 THR B 187 TRP B 189 -1 N TRP B 189 O ASN B 272 SHEET 4 AA3 6 SER B 206 THR B 213 -1 O LEU B 212 N LEU B 188 SHEET 5 AA3 6 GLN B 218 VAL B 227 -1 O LEU B 220 N THR B 213 SHEET 6 AA3 6 LEU B 371 ILE B 376 -1 O TYR B 375 N ILE B 219 SHEET 1 AA4 4 LYS B 247 PHE B 254 0 SHEET 2 AA4 4 TYR B 349 ALA B 356 -1 O PHE B 355 N PHE B 248 SHEET 3 AA4 4 PRO B 332 PHE B 339 -1 N THR B 336 O ASP B 354 SHEET 4 AA4 4 THR B 318 TYR B 324 -1 N VAL B 323 O VAL B 333 SHEET 1 AA5 6 SER C 278 VAL C 279 0 SHEET 2 AA5 6 ASN C 272 ASN C 275 -1 N ASN C 275 O SER C 278 SHEET 3 AA5 6 THR C 187 TRP C 189 -1 N TRP C 189 O ASN C 272 SHEET 4 AA5 6 SER C 206 THR C 213 -1 O LEU C 212 N LEU C 188 SHEET 5 AA5 6 GLN C 218 VAL C 227 -1 O LEU C 220 N THR C 213 SHEET 6 AA5 6 LEU C 371 ILE C 376 -1 O TYR C 375 N ILE C 219 SHEET 1 AA6 4 LYS C 247 PHE C 254 0 SHEET 2 AA6 4 TYR C 349 ALA C 356 -1 O PHE C 355 N PHE C 248 SHEET 3 AA6 4 PRO C 332 PHE C 339 -1 N THR C 336 O ASP C 354 SHEET 4 AA6 4 THR C 318 TYR C 324 -1 N VAL C 323 O VAL C 333 SSBOND 1 CYS A 215 CYS B 215 1555 1555 2.03 SSBOND 2 CYS A 215 CYS C 215 1555 1555 2.12 SSBOND 3 CYS B 215 CYS C 215 1555 1555 2.03 CRYST1 62.130 62.490 71.800 90.00 93.85 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016095 0.000000 0.001083 0.00000 SCALE2 0.000000 0.016003 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013959 0.00000