HEADER TRANSFERASE 17-MAR-23 8OG2 TITLE CRYSTAL STRUCTURE OF CREBBP HISTONE ACETYLTRANSFERASE DOMAIN IN TITLE 2 COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CREBBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MECHALY,W.ZHANG,A.HAOUZ,M.GREEN,F.RODRIGUES-LIMA REVDAT 2 23-OCT-24 8OG2 1 REMARK REVDAT 1 03-APR-24 8OG2 0 JRNL AUTH A.E.MECHALY,W.ZHANG,A.HAOUZ,M.GREEN,F.RODRIGUES-LIMA JRNL TITL CRYSTAL STRUCTURE OF CREBBP HISTONE ACETYLTRANSFERASE DOMAIN JRNL TITL 2 IN COMPLEX WITH COENZYME A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 55.0 REMARK 3 NUMBER OF REFLECTIONS : 19720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 77.6600 - 4.7200 1.00 5072 265 0.2155 0.2586 REMARK 3 2 4.7200 - 3.7400 0.99 4855 229 0.2124 0.2935 REMARK 3 3 3.7400 - 3.2700 0.83 3999 228 0.2724 0.3049 REMARK 3 4 3.2700 - 2.9700 0.57 2742 159 0.3296 0.3635 REMARK 3 5 2.9700 - 2.7600 0.30 1451 85 0.3749 0.3741 REMARK 3 6 2.7600 - 2.6000 0.11 526 34 0.3882 0.3891 REMARK 3 7 2.6000 - 2.4700 0.01 69 6 0.3601 0.3925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4591 REMARK 3 ANGLE : 1.428 6214 REMARK 3 CHIRALITY : 0.070 640 REMARK 3 PLANARITY : 0.008 809 REMARK 3 DIHEDRAL : 11.017 621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1076:1296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.099 53.686 11.679 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.5850 REMARK 3 T33: 0.4010 T12: 0.0853 REMARK 3 T13: 0.0488 T23: 0.2534 REMARK 3 L TENSOR REMARK 3 L11: 0.3351 L22: 1.5919 REMARK 3 L33: 1.4609 L12: 0.7396 REMARK 3 L13: -0.1287 L23: -0.5894 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0166 S13: -0.1835 REMARK 3 S21: 0.1759 S22: -0.2256 S23: -0.2464 REMARK 3 S31: -0.0472 S32: 0.5256 S33: 0.1064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 1297:1483 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.098 36.329 23.404 REMARK 3 T TENSOR REMARK 3 T11: 0.4736 T22: 0.4907 REMARK 3 T33: 0.4399 T12: -0.0215 REMARK 3 T13: -0.0267 T23: 0.2484 REMARK 3 L TENSOR REMARK 3 L11: 2.9586 L22: 1.1815 REMARK 3 L33: 1.7929 L12: 0.6803 REMARK 3 L13: -0.8768 L23: -0.9581 REMARK 3 S TENSOR REMARK 3 S11: -0.1690 S12: 0.7978 S13: -0.0411 REMARK 3 S21: -0.2075 S22: 0.0621 S23: 0.0037 REMARK 3 S31: 0.3031 S32: -0.5572 S33: -0.0946 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 1484:1681 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.720 46.257 21.198 REMARK 3 T TENSOR REMARK 3 T11: 0.5286 T22: 1.0493 REMARK 3 T33: 0.7038 T12: 0.1300 REMARK 3 T13: -0.0349 T23: 0.7589 REMARK 3 L TENSOR REMARK 3 L11: 0.6293 L22: 0.1604 REMARK 3 L33: 1.0081 L12: -0.2099 REMARK 3 L13: -0.6095 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.1939 S12: 0.9144 S13: 0.3419 REMARK 3 S21: -0.3158 S22: 0.0627 S23: 0.4973 REMARK 3 S31: -0.0433 S32: -1.1883 S33: -0.7107 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 1682:1745 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.123 21.231 34.316 REMARK 3 T TENSOR REMARK 3 T11: 0.9369 T22: 0.6954 REMARK 3 T33: 0.9448 T12: -0.2226 REMARK 3 T13: -0.2208 T23: 0.2805 REMARK 3 L TENSOR REMARK 3 L11: 0.3846 L22: 0.8714 REMARK 3 L33: 0.7350 L12: 0.3466 REMARK 3 L13: -0.2891 L23: -0.6617 REMARK 3 S TENSOR REMARK 3 S11: 0.3619 S12: -0.3167 S13: -0.6438 REMARK 3 S21: 0.3475 S22: -0.1195 S23: 0.2439 REMARK 3 S31: 0.7487 S32: -0.5569 S33: -0.1849 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 106.257 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CITRATE TRIBASIC REMARK 280 MONOHYDRATE 20 % W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.38300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.65600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.38300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.65600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.38300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.84500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.65600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.38300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.84500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.65600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1801 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1917 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1054 REMARK 465 HIS A 1055 REMARK 465 HIS A 1056 REMARK 465 HIS A 1057 REMARK 465 HIS A 1058 REMARK 465 HIS A 1059 REMARK 465 ASP A 1060 REMARK 465 TYR A 1061 REMARK 465 ASP A 1062 REMARK 465 ILE A 1063 REMARK 465 PRO A 1064 REMARK 465 THR A 1065 REMARK 465 THR A 1066 REMARK 465 GLU A 1067 REMARK 465 ASN A 1068 REMARK 465 LEU A 1069 REMARK 465 TYR A 1070 REMARK 465 PHE A 1071 REMARK 465 GLN A 1072 REMARK 465 GLY A 1073 REMARK 465 ALA A 1074 REMARK 465 LEU A 1211 REMARK 465 CYS A 1212 REMARK 465 CYS A 1213 REMARK 465 TYR A 1214 REMARK 465 GLY A 1215 REMARK 465 LYS A 1216 REMARK 465 GLN A 1217 REMARK 465 LEU A 1218 REMARK 465 CYS A 1219 REMARK 465 THR A 1220 REMARK 465 ILE A 1221 REMARK 465 PRO A 1222 REMARK 465 ARG A 1223 REMARK 465 ASP A 1224 REMARK 465 ALA A 1225 REMARK 465 ALA A 1226 REMARK 465 TYR A 1227 REMARK 465 TYR A 1228 REMARK 465 SER A 1229 REMARK 465 TYR A 1230 REMARK 465 GLN A 1231 REMARK 465 ASN A 1232 REMARK 465 ARG A 1233 REMARK 465 TYR A 1234 REMARK 465 HIS A 1235 REMARK 465 PHE A 1236 REMARK 465 CYS A 1237 REMARK 465 GLU A 1238 REMARK 465 LYS A 1239 REMARK 465 CYS A 1240 REMARK 465 PHE A 1241 REMARK 465 THR A 1242 REMARK 465 GLU A 1243 REMARK 465 ILE A 1244 REMARK 465 GLN A 1245 REMARK 465 GLY A 1246 REMARK 465 GLU A 1247 REMARK 465 ASN A 1248 REMARK 465 VAL A 1249 REMARK 465 THR A 1250 REMARK 465 LEU A 1251 REMARK 465 GLY A 1252 REMARK 465 ASP A 1253 REMARK 465 ASP A 1254 REMARK 465 PRO A 1255 REMARK 465 SER A 1256 REMARK 465 GLN A 1257 REMARK 465 PRO A 1258 REMARK 465 GLN A 1259 REMARK 465 THR A 1260 REMARK 465 THR A 1261 REMARK 465 ILE A 1262 REMARK 465 SER A 1263 REMARK 465 LYS A 1264 REMARK 465 ASP A 1265 REMARK 465 GLN A 1266 REMARK 465 PHE A 1267 REMARK 465 GLU A 1268 REMARK 465 LYS A 1269 REMARK 465 LYS A 1270 REMARK 465 LYS A 1271 REMARK 465 ASN A 1272 REMARK 465 SER A 1613 REMARK 465 GLY A 1614 REMARK 465 GLY A 1615 REMARK 465 SER A 1616 REMARK 465 GLY A 1617 REMARK 465 SER A 1618 REMARK 465 GLN A 1619 REMARK 465 ALA A 1639 REMARK 465 GLY A 1640 REMARK 465 PRO A 1641 REMARK 465 VAL A 1642 REMARK 465 ILE A 1643 REMARK 465 SER A 1644 REMARK 465 THR A 1645 REMARK 465 GLN A 1646 REMARK 465 CYS A 1732 REMARK 465 TYR A 1733 REMARK 465 ASN A 1734 REMARK 465 THR A 1735 REMARK 465 LYS A 1736 REMARK 465 SER A 1737 REMARK 465 GLY A 1746 REMARK 465 LEU A 1747 REMARK 465 GLY A 1748 REMARK 465 LEU A 1749 REMARK 465 ASP A 1750 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A1075 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 1508 O HOH A 1901 1.99 REMARK 500 NZ LYS A 1139 OD2 ASP A 1143 2.18 REMARK 500 O7A COA A 1806 O HOH A 1902 2.19 REMARK 500 O CYS A 1311 OG1 THR A 1315 2.19 REMARK 500 O ILE A 1649 O HOH A 1903 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 SO4 A 1801 O4 SO4 A 1801 4565 0.11 REMARK 500 O1 SO4 A 1801 O3 SO4 A 1801 4565 0.12 REMARK 500 S SO4 A 1801 O3 SO4 A 1801 4565 1.46 REMARK 500 S SO4 A 1801 O4 SO4 A 1801 4565 1.46 REMARK 500 S SO4 A 1801 O2 SO4 A 1801 4565 1.46 REMARK 500 S SO4 A 1801 O1 SO4 A 1801 4565 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1378 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A1378 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 CYS A1486 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 LEU A1621 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 CYS A1707 CA - CB - SG ANGL. DEV. = 21.7 DEGREES REMARK 500 CYS A1720 CA - CB - SG ANGL. DEV. = 16.6 DEGREES REMARK 500 CYS A1723 CA - CB - SG ANGL. DEV. = 12.5 DEGREES REMARK 500 LEU A1728 CA - CB - CG ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A1079 71.73 -178.18 REMARK 500 ARG A1081 62.54 -109.56 REMARK 500 PRO A1110 1.40 -68.59 REMARK 500 ASP A1124 -50.07 -21.63 REMARK 500 MET A1133 147.67 -170.04 REMARK 500 LEU A1166 -72.56 -75.46 REMARK 500 GLN A1209 -168.80 -103.42 REMARK 500 SER A1304 3.83 -69.91 REMARK 500 CYS A1308 -170.32 -68.08 REMARK 500 PHE A1379 -30.12 -138.49 REMARK 500 PHE A1439 22.15 -77.98 REMARK 500 GLU A1478 -145.25 48.95 REMARK 500 ILE A1483 -38.17 -133.38 REMARK 500 GLU A1513 13.62 -65.35 REMARK 500 ILE A1515 -63.73 -99.24 REMARK 500 ASP A1518 -171.13 -175.31 REMARK 500 LYS A1524 -5.19 -58.39 REMARK 500 HIS A1628 44.00 -96.18 REMARK 500 PHE A1678 50.83 -108.13 REMARK 500 LYS A1711 -17.65 63.21 REMARK 500 GLU A1715 -60.78 -131.71 REMARK 500 VAL A1722 -35.63 -137.71 REMARK 500 ASP A1725 75.62 -160.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 1124 TYR A 1125 -147.45 REMARK 500 GLU A 1551 SER A 1552 146.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1807 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A1165 O REMARK 620 2 LEU A1166 O 65.8 REMARK 620 3 ASN A1168 O 74.4 72.6 REMARK 620 4 HOH A1915 O 101.4 79.4 150.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1199 SG REMARK 620 2 CYS A1200 SG 134.9 REMARK 620 3 HIS A1291 ND1 96.6 88.5 REMARK 620 4 CYS A1294 SG 114.8 107.0 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1283 SG REMARK 620 2 CYS A1286 SG 121.3 REMARK 620 3 CYS A1308 SG 131.5 106.4 REMARK 620 4 CYS A1311 SG 111.8 80.5 82.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1707 SG REMARK 620 2 CYS A1729 SG 108.2 REMARK 620 N 1 DBREF 8OG2 A 1078 1555 UNP F8VPR5 F8VPR5_MOUSE 1079 1556 DBREF 8OG2 A 1619 1750 UNP F8VPR5 F8VPR5_MOUSE 1620 1751 SEQADV 8OG2 HIS A 1054 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 HIS A 1055 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 HIS A 1056 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 HIS A 1057 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 HIS A 1058 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 HIS A 1059 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 ASP A 1060 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 TYR A 1061 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 ASP A 1062 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 ILE A 1063 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 PRO A 1064 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 THR A 1065 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 THR A 1066 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 GLU A 1067 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 ASN A 1068 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 LEU A 1069 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 TYR A 1070 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 PHE A 1071 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 GLN A 1072 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 GLY A 1073 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 ALA A 1074 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 MET A 1075 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 GLY A 1076 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 SER A 1077 UNP F8VPR5 EXPRESSION TAG SEQADV 8OG2 PHE A 1503 UNP F8VPR5 TYR 1504 CONFLICT SEQADV 8OG2 SER A 1613 UNP F8VPR5 LINKER SEQADV 8OG2 GLY A 1614 UNP F8VPR5 LINKER SEQADV 8OG2 GLY A 1615 UNP F8VPR5 LINKER SEQADV 8OG2 SER A 1616 UNP F8VPR5 LINKER SEQADV 8OG2 GLY A 1617 UNP F8VPR5 LINKER SEQADV 8OG2 SER A 1618 UNP F8VPR5 LINKER SEQRES 1 A 640 HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO THR THR SEQRES 2 A 640 GLU ASN LEU TYR PHE GLN GLY ALA MET GLY SER SER GLN SEQRES 3 A 640 PRO ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG GLN SEQRES 4 A 640 ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN ASP SEQRES 5 A 640 PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO GLN SEQRES 6 A 640 LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS ASN SEQRES 7 A 640 PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP THR SEQRES 8 A 640 GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP VAL SEQRES 9 A 640 TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG LYS SEQRES 10 A 640 THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA GLU SEQRES 11 A 640 VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER LEU SEQRES 12 A 640 GLY TYR CYS CYS GLY ARG LYS TYR GLU PHE SER PRO GLN SEQRES 13 A 640 THR LEU CYS CYS TYR GLY LYS GLN LEU CYS THR ILE PRO SEQRES 14 A 640 ARG ASP ALA ALA TYR TYR SER TYR GLN ASN ARG TYR HIS SEQRES 15 A 640 PHE CYS GLU LYS CYS PHE THR GLU ILE GLN GLY GLU ASN SEQRES 16 A 640 VAL THR LEU GLY ASP ASP PRO SER GLN PRO GLN THR THR SEQRES 17 A 640 ILE SER LYS ASP GLN PHE GLU LYS LYS LYS ASN ASP THR SEQRES 18 A 640 LEU ASP PRO GLU PRO PHE VAL ASP CYS LYS GLU CYS GLY SEQRES 19 A 640 ARG LYS MET HIS GLN ILE CYS VAL LEU HIS TYR ASP ILE SEQRES 20 A 640 ILE TRP PRO SER GLY PHE VAL CYS ASP ASN CYS LEU LYS SEQRES 21 A 640 LYS THR GLY ARG PRO ARG LYS GLU ASN LYS PHE SER ALA SEQRES 22 A 640 LYS ARG LEU GLN THR THR ARG LEU GLY ASN HIS LEU GLU SEQRES 23 A 640 ASP ARG VAL ASN LYS PHE LEU ARG ARG GLN ASN HIS PRO SEQRES 24 A 640 GLU ALA GLY GLU VAL PHE VAL ARG VAL VAL ALA SER SER SEQRES 25 A 640 ASP LYS THR VAL GLU VAL LYS PRO GLY MET LYS SER ARG SEQRES 26 A 640 PHE VAL ASP SER GLY GLU MET SER GLU SER PHE PRO TYR SEQRES 27 A 640 ARG THR LYS ALA LEU PHE ALA PHE GLU GLU ILE ASP GLY SEQRES 28 A 640 VAL ASP VAL CYS PHE PHE GLY MET HIS VAL GLN GLU TYR SEQRES 29 A 640 GLY SER ASP CYS PRO PRO PRO ASN THR ARG ARG VAL TYR SEQRES 30 A 640 ILE SER TYR LEU ASP SER ILE HIS PHE PHE ARG PRO ARG SEQRES 31 A 640 CYS LEU ARG THR ALA VAL TYR HIS GLU ILE LEU ILE GLY SEQRES 32 A 640 TYR LEU GLU TYR VAL LYS LYS LEU GLY TYR VAL THR GLY SEQRES 33 A 640 HIS ILE TRP ALA CYS PRO PRO SER GLU GLY ASP ASP TYR SEQRES 34 A 640 ILE PHE HIS CYS HIS PRO PRO ASP GLN LYS ILE PRO LYS SEQRES 35 A 640 PRO LYS ARG LEU GLN GLU TRP PHE LYS LYS MET LEU ASP SEQRES 36 A 640 LYS ALA PHE ALA GLU ARG ILE ILE ASN ASP TYR LYS ASP SEQRES 37 A 640 ILE PHE LYS GLN ALA ASN GLU ASP ARG LEU THR SER ALA SEQRES 38 A 640 LYS GLU LEU PRO TYR PHE GLU GLY ASP PHE TRP PRO ASN SEQRES 39 A 640 VAL LEU GLU GLU SER ILE LYS GLU SER GLY GLY SER GLY SEQRES 40 A 640 SER GLN LYS LEU TYR ALA THR MET GLU LYS HIS LYS GLU SEQRES 41 A 640 VAL PHE PHE VAL ILE HIS LEU HIS ALA GLY PRO VAL ILE SEQRES 42 A 640 SER THR GLN PRO PRO ILE VAL ASP PRO ASP PRO LEU LEU SEQRES 43 A 640 SER CYS ASP LEU MET ASP GLY ARG ASP ALA PHE LEU THR SEQRES 44 A 640 LEU ALA ARG ASP LYS HIS TRP GLU PHE SER SER LEU ARG SEQRES 45 A 640 ARG SER LYS TRP SER THR LEU CYS MET LEU VAL GLU LEU SEQRES 46 A 640 HIS THR GLN GLY GLN ASP ARG PHE VAL TYR THR CYS ASN SEQRES 47 A 640 GLU CYS LYS HIS HIS VAL GLU THR ARG TRP HIS CYS THR SEQRES 48 A 640 VAL CYS GLU ASP TYR ASP LEU CYS ILE ASN CYS TYR ASN SEQRES 49 A 640 THR LYS SER HIS THR HIS LYS MET VAL LYS TRP GLY LEU SEQRES 50 A 640 GLY LEU ASP HET SO4 A1801 5 HET ZN A1802 1 HET ZN A1803 1 HET ZN A1804 1 HET ZN A1805 1 HET COA A1806 48 HET NA A1807 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM COA COENZYME A HETNAM NA SODIUM ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ZN 4(ZN 2+) FORMUL 7 COA C21 H36 N7 O16 P3 S FORMUL 8 NA NA 1+ FORMUL 9 HOH *17(H2 O) HELIX 1 AA1 LYS A 1086 ARG A 1103 1 18 HELIX 2 AA2 ASP A 1116 GLY A 1121 1 6 HELIX 3 AA3 ASP A 1124 VAL A 1129 1 6 HELIX 4 AA4 ASP A 1134 GLY A 1145 1 12 HELIX 5 AA5 GLU A 1149 ASN A 1168 1 20 HELIX 6 AA6 SER A 1172 LEU A 1196 1 25 HELIX 7 AA7 GLN A 1292 LEU A 1296 1 5 HELIX 8 AA8 ASP A 1309 LYS A 1314 1 6 HELIX 9 AA9 THR A 1332 ARG A 1348 1 17 HELIX 10 AB1 LYS A 1372 VAL A 1380 1 9 HELIX 11 AB2 PRO A 1442 CYS A 1444 5 3 HELIX 12 AB3 LEU A 1445 GLY A 1465 1 21 HELIX 13 AB4 LYS A 1495 GLU A 1513 1 19 HELIX 14 AB5 ILE A 1522 ASN A 1527 1 6 HELIX 15 AB6 SER A 1533 LEU A 1537 5 5 HELIX 16 AB7 ASP A 1543 ILE A 1553 1 11 HELIX 17 AB8 LEU A 1621 HIS A 1628 1 8 HELIX 18 AB9 CYS A 1658 ASP A 1662 5 5 HELIX 19 AC1 GLY A 1663 HIS A 1675 1 13 HELIX 20 AC2 SER A 1680 GLY A 1699 1 20 SHEET 1 AA1 2 PHE A1280 ASP A1282 0 SHEET 2 AA1 2 LYS A1289 HIS A1291 -1 O MET A1290 N VAL A1281 SHEET 1 AA2 7 VAL A1357 GLU A1370 0 SHEET 2 AA2 7 SER A1388 ILE A1402 -1 O PHE A1399 N PHE A1358 SHEET 3 AA2 7 VAL A1405 TYR A1417 -1 O VAL A1407 N GLU A1400 SHEET 4 AA2 7 ARG A1428 SER A1436 -1 O ARG A1428 N TYR A1417 SHEET 5 AA2 7 THR A1468 TRP A1472 1 O HIS A1470 N VAL A1429 SHEET 6 AA2 7 PHE A1632 HIS A1636 -1 O ILE A1635 N GLY A1469 SHEET 7 AA2 7 ASP A1518 ASP A1521 -1 N LYS A1520 O VAL A1634 SHEET 1 AA3 2 TYR A1705 THR A1706 0 SHEET 2 AA3 2 HIS A1713 VAL A1714 -1 O VAL A1714 N TYR A1705 SHEET 1 AA4 2 ARG A1717 CYS A1720 0 SHEET 2 AA4 2 MET A1742 TRP A1745 -1 O VAL A1743 N HIS A1719 SSBOND 1 CYS A 1444 CYS A 1444 1555 3555 2.94 SSBOND 2 CYS A 1710 CYS A 1729 1555 1555 2.50 SSBOND 3 CYS A 1720 CYS A 1723 1555 1555 2.07 LINK NH1 ARG A1446 O5A COA A1806 1555 1555 1.30 LINK O TRP A1165 NA NA A1807 1555 1555 3.13 LINK O LEU A1166 NA NA A1807 1555 1555 2.61 LINK O ASN A1168 NA NA A1807 1555 1555 2.39 LINK SG CYS A1199 ZN ZN A1802 1555 1555 2.23 LINK SG CYS A1200 ZN ZN A1802 1555 1555 2.08 LINK SG CYS A1283 ZN ZN A1803 1555 1555 2.43 LINK SG CYS A1286 ZN ZN A1803 1555 1555 2.27 LINK ND1 HIS A1291 ZN ZN A1802 1555 1555 2.10 LINK SG CYS A1294 ZN ZN A1802 1555 1555 2.47 LINK SG CYS A1308 ZN ZN A1803 1555 1555 2.44 LINK SG CYS A1311 ZN ZN A1803 1555 1555 2.57 LINK SG CYS A1707 ZN ZN A1804 1555 1555 2.51 LINK SG CYS A1729 ZN ZN A1804 1555 1555 2.32 LINK ND1 HIS A1740 ZN ZN A1805 1555 1555 2.27 LINK NA NA A1807 O HOH A1915 1555 1555 2.31 CISPEP 1 ASP A 1105 PRO A 1106 0 8.55 CISPEP 2 PRO A 1423 PRO A 1424 0 11.84 CISPEP 3 ARG A 1441 PRO A 1442 0 -3.38 CRYST1 86.766 145.690 155.312 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006439 0.00000