HEADER TRANSFERASE 20-MAR-23 8OGH TITLE TRUNCATED 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE (DXPS) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS WITH BUTYLACETYLPHOSPHONATE (BAP) BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE,DXP SYNTHASE,DXPS; COMPND 5 EC: 2.2.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: DXS, RV2682C, MTCY05A6.03C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, INHIBITOR, THDP, MEP-PATHWAY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.GAWRILJUK,R.OERLEMANS,R.M.GROVES REVDAT 2 25-OCT-23 8OGH 1 COMPND HETNAM FORMUL REVDAT 1 10-MAY-23 8OGH 0 JRNL AUTH V.O.GAWRILJUK,R.OERLEMANS,R.M.GIERSE,R.JOTWANI,A.K.H.HIRSCH, JRNL AUTH 2 M.R.GROVES JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS 1-DEOXY-D-XYLULOSE JRNL TITL 2 5-PHOSPHATE SYNTHASE IN COMPLEX WITH BUTYLACETYLPHOSPHONATE JRNL REF CRYSTALS V. 13 2023 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST13050737 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 155556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 7892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.9800 - 3.9500 0.98 4978 264 0.1249 0.1360 REMARK 3 2 3.9500 - 3.4500 1.00 5049 267 0.1330 0.1433 REMARK 3 3 3.4500 - 3.1400 1.00 5022 279 0.1431 0.1558 REMARK 3 4 3.1400 - 2.9100 1.00 5023 259 0.1442 0.1551 REMARK 3 5 2.9100 - 2.7400 1.00 5017 264 0.1480 0.1669 REMARK 3 6 2.7400 - 2.6000 0.94 4785 254 0.1474 0.1598 REMARK 3 7 2.6000 - 2.4900 0.99 4961 248 0.1475 0.1562 REMARK 3 8 2.4900 - 2.3900 0.99 4968 272 0.1443 0.1804 REMARK 3 9 2.3900 - 2.3100 0.99 4992 262 0.1438 0.1630 REMARK 3 10 2.3100 - 2.2400 0.98 4897 287 0.1665 0.1721 REMARK 3 11 2.2400 - 2.1700 0.99 4995 235 0.1487 0.1651 REMARK 3 12 2.1700 - 2.1200 0.99 4966 257 0.1474 0.1923 REMARK 3 13 2.1200 - 2.0700 0.98 4960 234 0.1564 0.1737 REMARK 3 14 2.0700 - 2.0200 0.99 4973 258 0.1543 0.1777 REMARK 3 15 2.0200 - 1.9800 0.99 4903 274 0.1575 0.1805 REMARK 3 16 1.9800 - 1.9400 0.99 4959 254 0.1769 0.2127 REMARK 3 17 1.9400 - 1.9000 0.97 4884 270 0.2060 0.2282 REMARK 3 18 1.9000 - 1.8700 0.93 4670 258 0.1777 0.1959 REMARK 3 19 1.8700 - 1.8300 0.97 4824 295 0.1754 0.2068 REMARK 3 20 1.8300 - 1.8000 0.98 4905 253 0.1747 0.2075 REMARK 3 21 1.8000 - 1.7800 0.98 4893 278 0.1842 0.2069 REMARK 3 22 1.7800 - 1.7500 0.98 4931 246 0.1908 0.2454 REMARK 3 23 1.7500 - 1.7300 0.98 4918 274 0.1921 0.2102 REMARK 3 24 1.7300 - 1.7000 0.98 4893 273 0.2028 0.2043 REMARK 3 25 1.7000 - 1.6800 0.98 4885 252 0.2079 0.2330 REMARK 3 26 1.6800 - 1.6600 0.98 4900 249 0.2105 0.2469 REMARK 3 27 1.6600 - 1.6400 0.98 4927 260 0.2143 0.2265 REMARK 3 28 1.6400 - 1.6200 0.98 4856 261 0.2250 0.2525 REMARK 3 29 1.6200 - 1.6000 0.95 4767 251 0.2538 0.2762 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8751 REMARK 3 ANGLE : 1.250 11907 REMARK 3 CHIRALITY : 0.076 1327 REMARK 3 PLANARITY : 0.010 1580 REMARK 3 DIHEDRAL : 13.389 3233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155741 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-IMIDAZOLE PH 6.3, 10% PEG REMARK 280 8000 , 20% ETHYLENE-GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.88750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ALA A 216 REMARK 465 PRO A 217 REMARK 465 THR A 218 REMARK 465 ILE A 219 REMARK 465 GLY A 220 REMARK 465 GLY A 221 REMARK 465 VAL A 222 REMARK 465 ALA A 223 REMARK 465 ASP A 224 REMARK 465 HIS A 225 REMARK 465 LEU A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 GLY A 229 REMARK 465 GLY A 230 REMARK 465 GLY A 231 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 GLN A 291 REMARK 465 ALA A 292 REMARK 465 GLU A 293 REMARK 465 GLN A 294 REMARK 465 MET A 295 REMARK 465 HIS A 296 REMARK 465 SER A 297 REMARK 465 THR A 298 REMARK 465 VAL A 299 REMARK 465 PRO A 300 REMARK 465 ILE A 301 REMARK 465 ASP A 302 REMARK 465 PRO A 303 REMARK 465 ALA A 304 REMARK 465 THR A 305 REMARK 465 GLY A 306 REMARK 465 GLN A 307 REMARK 465 ALA A 308 REMARK 465 THR A 309 REMARK 465 LYS A 310 REMARK 465 VAL A 311 REMARK 465 ALA A 312 REMARK 465 VAL A 627 REMARK 465 CYS A 628 REMARK 465 ALA A 629 REMARK 465 SER A 630 REMARK 465 ASP A 631 REMARK 465 ALA A 632 REMARK 465 ILE A 633 REMARK 465 PRO A 634 REMARK 465 GLU A 635 REMARK 465 HIS A 636 REMARK 465 LEU A 637 REMARK 465 ASP A 638 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 ALA B 216 REMARK 465 PRO B 217 REMARK 465 THR B 218 REMARK 465 ILE B 219 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 465 VAL B 222 REMARK 465 ALA B 223 REMARK 465 ASP B 224 REMARK 465 HIS B 225 REMARK 465 LEU B 226 REMARK 465 ALA B 227 REMARK 465 GLY B 228 REMARK 465 GLY B 229 REMARK 465 GLY B 230 REMARK 465 GLY B 231 REMARK 465 ALA B 289 REMARK 465 ASP B 290 REMARK 465 GLN B 291 REMARK 465 ALA B 292 REMARK 465 GLU B 293 REMARK 465 GLN B 294 REMARK 465 MET B 295 REMARK 465 HIS B 296 REMARK 465 SER B 297 REMARK 465 THR B 298 REMARK 465 VAL B 299 REMARK 465 PRO B 300 REMARK 465 ILE B 301 REMARK 465 ASP B 302 REMARK 465 PRO B 303 REMARK 465 ALA B 304 REMARK 465 THR B 305 REMARK 465 GLY B 306 REMARK 465 GLN B 307 REMARK 465 ALA B 308 REMARK 465 THR B 309 REMARK 465 LYS B 310 REMARK 465 VAL B 311 REMARK 465 ALA B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 626 REMARK 465 VAL B 627 REMARK 465 CYS B 628 REMARK 465 ALA B 629 REMARK 465 SER B 630 REMARK 465 ASP B 631 REMARK 465 ALA B 632 REMARK 465 ILE B 633 REMARK 465 PRO B 634 REMARK 465 GLU B 635 REMARK 465 HIS B 636 REMARK 465 LEU B 637 REMARK 465 ASP B 638 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 69 -50.67 76.21 REMARK 500 SER A 115 7.28 82.51 REMARK 500 ASP A 241 43.69 -141.17 REMARK 500 VAL A 402 -61.98 -96.84 REMARK 500 ARG A 535 -75.03 68.48 REMARK 500 ARG A 535 -75.80 69.32 REMARK 500 THR B 69 -58.09 76.13 REMARK 500 SER B 115 7.20 84.24 REMARK 500 ASN B 135 37.34 70.06 REMARK 500 ASP B 241 46.50 -140.84 REMARK 500 ARG B 535 -74.33 68.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1450 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1451 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1452 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1453 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1462 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B1463 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B1464 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B1465 DISTANCE = 6.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 710 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 144 OD1 REMARK 620 2 ASN A 173 OD1 87.2 REMARK 620 3 VMI A 701 O11 168.0 93.1 REMARK 620 4 VMI A 701 O7 92.9 178.0 87.2 REMARK 620 5 HOH A 946 O 84.4 88.8 83.6 93.2 REMARK 620 6 HOH A1019 O 91.2 84.0 100.7 94.0 171.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 706 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 144 OD1 REMARK 620 2 ASN B 173 OD1 87.6 REMARK 620 3 VMI B 701 O7 92.5 177.0 REMARK 620 4 VMI B 701 O9 171.1 94.4 85.9 REMARK 620 5 HOH B 918 O 84.1 87.5 95.6 87.3 REMARK 620 6 HOH B1019 O 87.4 82.1 94.9 101.5 166.8 REMARK 620 N 1 2 3 4 5 DBREF 8OGH A 1 227 UNP P9WNS3 DXS_MYCTU 1 189 DBREF 8OGH A 235 638 UNP P9WNS3 DXS_MYCTU 235 638 DBREF 8OGH B 1 227 UNP P9WNS3 DXS_MYCTU 1 189 DBREF 8OGH B 235 638 UNP P9WNS3 DXS_MYCTU 235 638 SEQADV 8OGH GLY A -3 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH ALA A -2 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH MET A -1 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH GLY A 0 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH GLY A 228 UNP P9WNS3 LINKER SEQADV 8OGH GLY A 229 UNP P9WNS3 LINKER SEQADV 8OGH GLY A 230 UNP P9WNS3 LINKER SEQADV 8OGH GLY A 231 UNP P9WNS3 LINKER SEQADV 8OGH GLY A 232 UNP P9WNS3 LINKER SEQADV 8OGH GLY A 233 UNP P9WNS3 LINKER SEQADV 8OGH GLY A 234 UNP P9WNS3 LINKER SEQADV 8OGH GLY B -3 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH ALA B -2 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH MET B -1 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH GLY B 0 UNP P9WNS3 EXPRESSION TAG SEQADV 8OGH GLY B 228 UNP P9WNS3 LINKER SEQADV 8OGH GLY B 229 UNP P9WNS3 LINKER SEQADV 8OGH GLY B 230 UNP P9WNS3 LINKER SEQADV 8OGH GLY B 231 UNP P9WNS3 LINKER SEQADV 8OGH GLY B 232 UNP P9WNS3 LINKER SEQADV 8OGH GLY B 233 UNP P9WNS3 LINKER SEQADV 8OGH GLY B 234 UNP P9WNS3 LINKER SEQRES 1 A 604 GLY ALA MET GLY MET LEU GLN GLN ILE ARG GLY PRO ALA SEQRES 2 A 604 ASP LEU GLN HIS LEU SER GLN ALA GLN LEU ARG GLU LEU SEQRES 3 A 604 ALA ALA GLU ILE ARG GLU PHE LEU ILE HIS LYS VAL ALA SEQRES 4 A 604 ALA THR GLY GLY HIS LEU GLY PRO ASN LEU GLY VAL VAL SEQRES 5 A 604 GLU LEU THR LEU ALA LEU HIS ARG VAL PHE ASP SER PRO SEQRES 6 A 604 HIS ASP PRO ILE ILE PHE ASP THR GLY HIS GLN ALA TYR SEQRES 7 A 604 VAL HIS LYS MET LEU THR GLY ARG SER GLN ASP PHE ALA SEQRES 8 A 604 THR LEU ARG LYS LYS GLY GLY LEU SER GLY TYR PRO SER SEQRES 9 A 604 ARG ALA GLU SER GLU HIS ASP TRP VAL GLU SER SER HIS SEQRES 10 A 604 ALA SER ALA ALA LEU SER TYR ALA ASP GLY LEU ALA LYS SEQRES 11 A 604 ALA PHE GLU LEU THR GLY HIS ARG ASN ARG HIS VAL VAL SEQRES 12 A 604 ALA VAL VAL GLY ASP GLY ALA LEU THR GLY GLY MET CYS SEQRES 13 A 604 TRP GLU ALA LEU ASN ASN ILE ALA ALA SER ARG ARG PRO SEQRES 14 A 604 VAL ILE ILE VAL VAL ASN ASP ASN GLY ARG SER TYR ALA SEQRES 15 A 604 PRO THR ILE GLY GLY VAL ALA ASP HIS LEU ALA GLY GLY SEQRES 16 A 604 GLY GLY GLY GLY GLY PRO GLN LEU LEU PHE THR ASP LEU SEQRES 17 A 604 GLY LEU LYS TYR VAL GLY PRO VAL ASP GLY HIS ASP GLU SEQRES 18 A 604 ARG ALA VAL GLU VAL ALA LEU ARG SER ALA ARG ARG PHE SEQRES 19 A 604 GLY ALA PRO VAL ILE VAL HIS VAL VAL THR ARG LYS GLY SEQRES 20 A 604 MET GLY TYR PRO PRO ALA GLU ALA ASP GLN ALA GLU GLN SEQRES 21 A 604 MET HIS SER THR VAL PRO ILE ASP PRO ALA THR GLY GLN SEQRES 22 A 604 ALA THR LYS VAL ALA GLY PRO GLY TRP THR ALA THR PHE SEQRES 23 A 604 SER ASP ALA LEU ILE GLY TYR ALA GLN LYS ARG ARG ASP SEQRES 24 A 604 ILE VAL ALA ILE THR ALA ALA MET PRO GLY PRO THR GLY SEQRES 25 A 604 LEU THR ALA PHE GLY GLN ARG PHE PRO ASP ARG LEU PHE SEQRES 26 A 604 ASP VAL GLY ILE ALA GLU GLN HIS ALA MET THR SER ALA SEQRES 27 A 604 ALA GLY LEU ALA MET GLY GLY LEU HIS PRO VAL VAL ALA SEQRES 28 A 604 ILE TYR SER THR PHE LEU ASN ARG ALA PHE ASP GLN ILE SEQRES 29 A 604 MET MET ASP VAL ALA LEU HIS LYS LEU PRO VAL THR MET SEQRES 30 A 604 VAL LEU ASP ARG ALA GLY ILE THR GLY SER ASP GLY ALA SEQRES 31 A 604 SER HIS ASN GLY MET TRP ASP LEU SER MET LEU GLY ILE SEQRES 32 A 604 VAL PRO GLY ILE ARG VAL ALA ALA PRO ARG ASP ALA THR SEQRES 33 A 604 ARG LEU ARG GLU GLU LEU GLY GLU ALA LEU ASP VAL ASP SEQRES 34 A 604 ASP GLY PRO THR ALA LEU ARG PHE PRO LYS GLY ASP VAL SEQRES 35 A 604 GLY GLU ASP ILE SER ALA LEU GLU ARG ARG GLY GLY VAL SEQRES 36 A 604 ASP VAL LEU ALA ALA PRO ALA ASP GLY LEU ASN HIS ASP SEQRES 37 A 604 VAL LEU LEU VAL ALA ILE GLY ALA PHE ALA PRO MET ALA SEQRES 38 A 604 LEU ALA VAL ALA LYS ARG LEU HIS ASN GLN GLY ILE GLY SEQRES 39 A 604 VAL THR VAL ILE ASP PRO ARG TRP VAL LEU PRO VAL SER SEQRES 40 A 604 ASP GLY VAL ARG GLU LEU ALA VAL GLN HIS LYS LEU LEU SEQRES 41 A 604 VAL THR LEU GLU ASP ASN GLY VAL ASN GLY GLY ALA GLY SEQRES 42 A 604 SER ALA VAL SER ALA ALA LEU ARG ARG ALA GLU ILE ASP SEQRES 43 A 604 VAL PRO CYS ARG ASP VAL GLY LEU PRO GLN GLU PHE TYR SEQRES 44 A 604 GLU HIS ALA SER ARG SER GLU VAL LEU ALA ASP LEU GLY SEQRES 45 A 604 LEU THR ASP GLN ASP VAL ALA ARG ARG ILE THR GLY TRP SEQRES 46 A 604 VAL ALA ALA LEU GLY THR GLY VAL CYS ALA SER ASP ALA SEQRES 47 A 604 ILE PRO GLU HIS LEU ASP SEQRES 1 B 604 GLY ALA MET GLY MET LEU GLN GLN ILE ARG GLY PRO ALA SEQRES 2 B 604 ASP LEU GLN HIS LEU SER GLN ALA GLN LEU ARG GLU LEU SEQRES 3 B 604 ALA ALA GLU ILE ARG GLU PHE LEU ILE HIS LYS VAL ALA SEQRES 4 B 604 ALA THR GLY GLY HIS LEU GLY PRO ASN LEU GLY VAL VAL SEQRES 5 B 604 GLU LEU THR LEU ALA LEU HIS ARG VAL PHE ASP SER PRO SEQRES 6 B 604 HIS ASP PRO ILE ILE PHE ASP THR GLY HIS GLN ALA TYR SEQRES 7 B 604 VAL HIS LYS MET LEU THR GLY ARG SER GLN ASP PHE ALA SEQRES 8 B 604 THR LEU ARG LYS LYS GLY GLY LEU SER GLY TYR PRO SER SEQRES 9 B 604 ARG ALA GLU SER GLU HIS ASP TRP VAL GLU SER SER HIS SEQRES 10 B 604 ALA SER ALA ALA LEU SER TYR ALA ASP GLY LEU ALA LYS SEQRES 11 B 604 ALA PHE GLU LEU THR GLY HIS ARG ASN ARG HIS VAL VAL SEQRES 12 B 604 ALA VAL VAL GLY ASP GLY ALA LEU THR GLY GLY MET CYS SEQRES 13 B 604 TRP GLU ALA LEU ASN ASN ILE ALA ALA SER ARG ARG PRO SEQRES 14 B 604 VAL ILE ILE VAL VAL ASN ASP ASN GLY ARG SER TYR ALA SEQRES 15 B 604 PRO THR ILE GLY GLY VAL ALA ASP HIS LEU ALA GLY GLY SEQRES 16 B 604 GLY GLY GLY GLY GLY PRO GLN LEU LEU PHE THR ASP LEU SEQRES 17 B 604 GLY LEU LYS TYR VAL GLY PRO VAL ASP GLY HIS ASP GLU SEQRES 18 B 604 ARG ALA VAL GLU VAL ALA LEU ARG SER ALA ARG ARG PHE SEQRES 19 B 604 GLY ALA PRO VAL ILE VAL HIS VAL VAL THR ARG LYS GLY SEQRES 20 B 604 MET GLY TYR PRO PRO ALA GLU ALA ASP GLN ALA GLU GLN SEQRES 21 B 604 MET HIS SER THR VAL PRO ILE ASP PRO ALA THR GLY GLN SEQRES 22 B 604 ALA THR LYS VAL ALA GLY PRO GLY TRP THR ALA THR PHE SEQRES 23 B 604 SER ASP ALA LEU ILE GLY TYR ALA GLN LYS ARG ARG ASP SEQRES 24 B 604 ILE VAL ALA ILE THR ALA ALA MET PRO GLY PRO THR GLY SEQRES 25 B 604 LEU THR ALA PHE GLY GLN ARG PHE PRO ASP ARG LEU PHE SEQRES 26 B 604 ASP VAL GLY ILE ALA GLU GLN HIS ALA MET THR SER ALA SEQRES 27 B 604 ALA GLY LEU ALA MET GLY GLY LEU HIS PRO VAL VAL ALA SEQRES 28 B 604 ILE TYR SER THR PHE LEU ASN ARG ALA PHE ASP GLN ILE SEQRES 29 B 604 MET MET ASP VAL ALA LEU HIS LYS LEU PRO VAL THR MET SEQRES 30 B 604 VAL LEU ASP ARG ALA GLY ILE THR GLY SER ASP GLY ALA SEQRES 31 B 604 SER HIS ASN GLY MET TRP ASP LEU SER MET LEU GLY ILE SEQRES 32 B 604 VAL PRO GLY ILE ARG VAL ALA ALA PRO ARG ASP ALA THR SEQRES 33 B 604 ARG LEU ARG GLU GLU LEU GLY GLU ALA LEU ASP VAL ASP SEQRES 34 B 604 ASP GLY PRO THR ALA LEU ARG PHE PRO LYS GLY ASP VAL SEQRES 35 B 604 GLY GLU ASP ILE SER ALA LEU GLU ARG ARG GLY GLY VAL SEQRES 36 B 604 ASP VAL LEU ALA ALA PRO ALA ASP GLY LEU ASN HIS ASP SEQRES 37 B 604 VAL LEU LEU VAL ALA ILE GLY ALA PHE ALA PRO MET ALA SEQRES 38 B 604 LEU ALA VAL ALA LYS ARG LEU HIS ASN GLN GLY ILE GLY SEQRES 39 B 604 VAL THR VAL ILE ASP PRO ARG TRP VAL LEU PRO VAL SER SEQRES 40 B 604 ASP GLY VAL ARG GLU LEU ALA VAL GLN HIS LYS LEU LEU SEQRES 41 B 604 VAL THR LEU GLU ASP ASN GLY VAL ASN GLY GLY ALA GLY SEQRES 42 B 604 SER ALA VAL SER ALA ALA LEU ARG ARG ALA GLU ILE ASP SEQRES 43 B 604 VAL PRO CYS ARG ASP VAL GLY LEU PRO GLN GLU PHE TYR SEQRES 44 B 604 GLU HIS ALA SER ARG SER GLU VAL LEU ALA ASP LEU GLY SEQRES 45 B 604 LEU THR ASP GLN ASP VAL ALA ARG ARG ILE THR GLY TRP SEQRES 46 B 604 VAL ALA ALA LEU GLY THR GLY VAL CYS ALA SER ASP ALA SEQRES 47 B 604 ILE PRO GLU HIS LEU ASP HET VMI A 701 37 HET GOL A 702 6 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 709 4 HET MG A 710 1 HET VMI B 701 37 HET EDO B 702 4 HET EDO B 703 4 HET EDO B 704 4 HET PEG B 705 7 HET MG B 706 1 HETNAM VMI [(S)-1-[3-[(4-AZANYL-2-METHYL-PYRIMIDIN-5-YL)METHYL]-4- HETNAM 2 VMI METHYL-5-[2-[OXIDANYL(PHOSPHONOOXY) HETNAM 3 VMI PHOSPHORYL]OXYETHYL]-1,3-THIAZOL-3-IUM-2-YL]-1- HETNAM 4 VMI OXIDANYL-ETHYL]-BUTOXY-PHOSPHINIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VMI 2(C18 H32 N4 O11 P3 S 1+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 EDO 10(C2 H6 O2) FORMUL 12 MG 2(MG 2+) FORMUL 17 PEG C4 H10 O3 FORMUL 19 HOH *1318(H2 O) HELIX 1 AA1 MET A 1 ILE A 5 5 5 HELIX 2 AA2 GLY A 7 GLN A 12 5 6 HELIX 3 AA3 SER A 15 GLY A 38 1 24 HELIX 4 AA4 HIS A 40 GLY A 46 1 7 HELIX 5 AA5 VAL A 47 PHE A 58 1 12 HELIX 6 AA6 ALA A 73 LEU A 79 1 7 HELIX 7 AA7 THR A 80 GLY A 81 5 2 HELIX 8 AA8 ARG A 82 LEU A 89 5 8 HELIX 9 AA9 ALA A 116 THR A 131 1 16 HELIX 10 AB1 GLY A 145 THR A 148 5 4 HELIX 11 AB2 GLY A 149 ALA A 161 1 13 HELIX 12 AB3 ASP A 254 GLY A 269 1 16 HELIX 13 AB4 GLY A 315 ARG A 331 1 17 HELIX 14 AB5 LEU A 347 PHE A 354 1 8 HELIX 15 AB6 ALA A 364 GLY A 378 1 15 HELIX 16 AB7 TYR A 387 ARG A 393 5 7 HELIX 17 AB8 ALA A 394 ASP A 401 1 8 HELIX 18 AB9 TRP A 430 GLY A 436 1 7 HELIX 19 AC1 ASP A 448 ASP A 461 1 14 HELIX 20 AC2 PHE A 511 GLN A 525 1 15 HELIX 21 AC3 SER A 541 VAL A 549 1 9 HELIX 22 AC4 GLY A 565 ALA A 577 1 13 HELIX 23 AC5 SER A 597 LEU A 605 1 9 HELIX 24 AC6 THR A 608 ALA A 622 1 15 HELIX 25 AC7 MET B 1 ILE B 5 5 5 HELIX 26 AC8 GLY B 7 GLN B 12 5 6 HELIX 27 AC9 SER B 15 ALA B 35 1 21 HELIX 28 AD1 HIS B 40 GLY B 46 1 7 HELIX 29 AD2 VAL B 47 PHE B 58 1 12 HELIX 30 AD3 ALA B 73 LEU B 79 1 7 HELIX 31 AD4 THR B 80 GLY B 81 5 2 HELIX 32 AD5 ARG B 82 LEU B 89 5 8 HELIX 33 AD6 ALA B 116 THR B 131 1 16 HELIX 34 AD7 GLY B 145 THR B 148 5 4 HELIX 35 AD8 GLY B 149 ALA B 160 1 12 HELIX 36 AD9 ASP B 254 GLY B 269 1 16 HELIX 37 AE1 TYR B 284 GLU B 288 5 5 HELIX 38 AE2 GLY B 315 ARG B 331 1 17 HELIX 39 AE3 LEU B 347 PHE B 354 1 8 HELIX 40 AE4 ALA B 364 GLY B 378 1 15 HELIX 41 AE5 TYR B 387 ARG B 393 5 7 HELIX 42 AE6 ALA B 394 ASP B 401 1 8 HELIX 43 AE7 TRP B 430 GLY B 436 1 7 HELIX 44 AE8 ASP B 448 ASP B 461 1 14 HELIX 45 AE9 PHE B 511 GLN B 525 1 15 HELIX 46 AF1 SER B 541 VAL B 549 1 9 HELIX 47 AF2 GLY B 565 ALA B 577 1 13 HELIX 48 AF3 SER B 597 LEU B 605 1 9 HELIX 49 AF4 THR B 608 GLY B 624 1 17 SHEET 1 AA1 5 ILE A 65 PHE A 67 0 SHEET 2 AA1 5 VAL A 138 GLY A 143 1 O VAL A 139 N ILE A 66 SHEET 3 AA1 5 VAL A 166 ASP A 172 1 O VAL A 169 N VAL A 142 SHEET 4 AA1 5 VAL A 272 VAL A 277 1 O VAL A 276 N ASP A 172 SHEET 5 AA1 5 LYS A 245 ASP A 251 1 N VAL A 250 O VAL A 277 SHEET 1 AA2 7 LEU A 358 ASP A 360 0 SHEET 2 AA2 7 ILE A 334 THR A 338 1 N ALA A 336 O PHE A 359 SHEET 3 AA2 7 HIS A 381 ALA A 385 1 O VAL A 383 N VAL A 335 SHEET 4 AA2 7 THR A 410 LEU A 413 1 O THR A 410 N VAL A 384 SHEET 5 AA2 7 THR A 467 ARG A 470 1 O LEU A 469 N LEU A 413 SHEET 6 AA2 7 ARG A 442 ALA A 444 1 N ALA A 444 O ALA A 468 SHEET 7 AA2 7 TRP A 536 LEU A 538 -1 O LEU A 538 N VAL A 443 SHEET 1 AA3 6 GLU A 484 ARG A 486 0 SHEET 2 AA3 6 VAL A 489 ALA A 493 -1 O VAL A 491 N GLU A 484 SHEET 3 AA3 6 VAL A 529 ASP A 533 -1 O ASP A 533 N ASP A 490 SHEET 4 AA3 6 VAL A 503 ALA A 507 1 N LEU A 505 O THR A 530 SHEET 5 AA3 6 LEU A 553 GLY A 561 1 O VAL A 555 N VAL A 506 SHEET 6 AA3 6 CYS A 583 LEU A 588 1 O VAL A 586 N THR A 556 SHEET 1 AA4 5 ILE B 65 PHE B 67 0 SHEET 2 AA4 5 VAL B 138 GLY B 143 1 O VAL B 139 N ILE B 66 SHEET 3 AA4 5 VAL B 166 ASP B 172 1 O ILE B 167 N VAL B 138 SHEET 4 AA4 5 VAL B 272 VAL B 277 1 O VAL B 276 N ASP B 172 SHEET 5 AA4 5 LYS B 245 ASP B 251 1 N VAL B 250 O VAL B 277 SHEET 1 AA5 7 LEU B 358 ASP B 360 0 SHEET 2 AA5 7 ILE B 334 THR B 338 1 N ALA B 336 O PHE B 359 SHEET 3 AA5 7 HIS B 381 ALA B 385 1 O VAL B 383 N VAL B 335 SHEET 4 AA5 7 THR B 410 LEU B 413 1 O THR B 410 N VAL B 384 SHEET 5 AA5 7 THR B 467 ARG B 470 1 O LEU B 469 N LEU B 413 SHEET 6 AA5 7 ARG B 442 ALA B 444 1 N ALA B 444 O ALA B 468 SHEET 7 AA5 7 TRP B 536 LEU B 538 -1 O LEU B 538 N VAL B 443 SHEET 1 AA6 6 GLU B 484 ARG B 486 0 SHEET 2 AA6 6 VAL B 489 ALA B 493 -1 O VAL B 491 N GLU B 484 SHEET 3 AA6 6 VAL B 529 ASP B 533 -1 O ASP B 533 N ASP B 490 SHEET 4 AA6 6 VAL B 503 ALA B 507 1 N LEU B 505 O THR B 530 SHEET 5 AA6 6 LEU B 553 GLY B 561 1 O LEU B 553 N LEU B 504 SHEET 6 AA6 6 CYS B 583 LEU B 588 1 O VAL B 586 N THR B 556 LINK OD1 ASP A 144 MG MG A 710 1555 1555 2.11 LINK OD1 ASN A 173 MG MG A 710 1555 1555 2.10 LINK O11 VMI A 701 MG MG A 710 1555 1555 2.13 LINK O7 VMI A 701 MG MG A 710 1555 1555 2.11 LINK MG MG A 710 O HOH A 946 1555 1555 2.10 LINK MG MG A 710 O HOH A1019 1555 1555 2.08 LINK OD1 ASP B 144 MG MG B 706 1555 1555 2.14 LINK OD1 ASN B 173 MG MG B 706 1555 1555 2.08 LINK O7 VMI B 701 MG MG B 706 1555 1555 2.01 LINK O9 VMI B 701 MG MG B 706 1555 1555 2.07 LINK MG MG B 706 O HOH B 918 1555 1555 2.10 LINK MG MG B 706 O HOH B1019 1555 1555 2.18 CISPEP 1 SER A 60 PRO A 61 0 0.85 CISPEP 2 GLY A 248 PRO A 249 0 3.29 CISPEP 3 LEU A 538 PRO A 539 0 -4.75 CISPEP 4 SER B 60 PRO B 61 0 -2.52 CISPEP 5 GLY B 248 PRO B 249 0 -1.11 CISPEP 6 LEU B 538 PRO B 539 0 -9.51 CRYST1 63.462 127.775 79.583 90.00 106.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015757 0.000000 0.004782 0.00000 SCALE2 0.000000 0.007826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013131 0.00000