data_8OI0 # _entry.id 8OI0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8OI0 pdb_00008oi0 10.2210/pdb8oi0/pdb WWPDB D_1292129328 ? ? EMDB EMD-16886 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8OI0 _pdbx_database_status.recvd_initial_deposition_date 2023-03-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Other structure from the same paper - the acetyl-PAM4 morphology I fibril structure' 8OH2 unspecified PDB 'Other structure from the same particle dataset, fmoc-PAM4 morphology I fibril structure' 8OHI unspecified PDB 'Other structure from the same particle dataset, fmoc-PAM4 morphology IIb fibril structure' 8OHP unspecified EMDB 'Structure of the Fmoc-Tau-PAM4 peptide fibril morphology 2b' EMD-16886 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email N.A.Ranson@leeds.ac.uk _pdbx_contact_author.name_first Neil _pdbx_contact_author.name_last Ranson _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3640-5275 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilkinson, M.' 1 0000-0001-5490-613X 'Louros, N.' 2 0000-0002-4030-1022 'Tsaka, G.' 3 ? 'Ramakers, M.' 4 ? 'Morelli, C.' 5 ? 'Garcia, T.' 6 ? 'Gallardo, R.U.' 7 ? ;D'Haeyer, S. ; 8 ? 'Goossens, V.' 9 ? 'Audenaert, D.' 10 ? 'Thal, D.R.' 11 ? 'Ranson, N.A.' 12 0000-0002-3640-5275 'Radford, S.E.' 13 0000-0002-3079-8039 'Rousseau, F.' 14 ? 'Schymkowitz, J.' 15 0000-0003-2020-0168 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 1028 _citation.page_last 1028 _citation.title 'Local structural preferences in shaping tau amyloid polymorphism.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-45429-2 _citation.pdbx_database_id_PubMed 38310108 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Louros, N.' 1 0000-0002-4030-1022 primary 'Wilkinson, M.' 2 0000-0001-5490-613X primary 'Tsaka, G.' 3 ? primary 'Ramakers, M.' 4 ? primary 'Morelli, C.' 5 0000-0001-5632-888X primary 'Garcia, T.' 6 ? primary 'Gallardo, R.' 7 ? primary ;D'Haeyer, S. ; 8 ? primary 'Goossens, V.' 9 ? primary 'Audenaert, D.' 10 ? primary 'Thal, D.R.' 11 0000-0002-1036-1075 primary 'Mackenzie, I.R.' 12 ? primary 'Rademakers, R.' 13 0000-0002-4049-0863 primary 'Ranson, N.A.' 14 0000-0002-3640-5275 primary 'Radford, S.E.' 15 0000-0002-3079-8039 primary 'Rousseau, F.' 16 0000-0002-9189-7399 primary 'Schymkowitz, J.' 17 0000-0003-2020-0168 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 1652.269 _entity.pdbx_number_of_molecules 24 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;13-residue peptide of the PAM4 motif of Tau, corresponding to residues 350-362 of the Tau repeat domain. The peptide is C-terminally amidated and should be N-terminally acetylated, however 10% (by mass spec) still adducted to Fmoc protection group used in synthesis. the Fmoc-peptide form dominated the fibril assembly. ; # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein,Paired helical filament-tau,PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(VP1)VQSKIGSLDNIT(HIA)' _entity_poly.pdbx_seq_one_letter_code_can XVQSKIGSLDNITH _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VP1 n 1 2 VAL n 1 3 GLN n 1 4 SER n 1 5 LYS n 1 6 ILE n 1 7 GLY n 1 8 SER n 1 9 LEU n 1 10 ASP n 1 11 ASN n 1 12 ILE n 1 13 THR n 1 14 HIA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIA 'L-peptide linking' n 'L-HISTIDINE AMIDE' L-HISTIDINAMIDE 'C6 H10 N4 O' 154.170 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VP1 non-polymer . 'Fluorenylmethyloxycarbonyl chloride' ? 'C15 H11 Cl O2' 258.700 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VP1 1 401 349 VP1 FMC A . n A 1 2 VAL 2 350 350 VAL VAL A . n A 1 3 GLN 3 351 351 GLN GLN A . n A 1 4 SER 4 352 352 SER SER A . n A 1 5 LYS 5 353 353 LYS LYS A . n A 1 6 ILE 6 354 354 ILE ILE A . n A 1 7 GLY 7 355 355 GLY GLY A . n A 1 8 SER 8 356 356 SER SER A . n A 1 9 LEU 9 357 357 LEU LEU A . n A 1 10 ASP 10 358 358 ASP ASP A . n A 1 11 ASN 11 359 359 ASN ASN A . n A 1 12 ILE 12 360 360 ILE ILE A . n A 1 13 THR 13 361 361 THR THR A . n A 1 14 HIA 14 362 362 HIA HIS A . n B 1 1 VP1 1 401 349 VP1 FMC B . n B 1 2 VAL 2 350 350 VAL VAL B . n B 1 3 GLN 3 351 351 GLN GLN B . n B 1 4 SER 4 352 352 SER SER B . n B 1 5 LYS 5 353 353 LYS LYS B . n B 1 6 ILE 6 354 354 ILE ILE B . n B 1 7 GLY 7 355 355 GLY GLY B . n B 1 8 SER 8 356 356 SER SER B . n B 1 9 LEU 9 357 357 LEU LEU B . n B 1 10 ASP 10 358 358 ASP ASP B . n B 1 11 ASN 11 359 359 ASN ASN B . n B 1 12 ILE 12 360 360 ILE ILE B . n B 1 13 THR 13 361 361 THR THR B . n B 1 14 HIA 14 362 362 HIA HIS B . n C 1 1 VP1 1 401 349 VP1 FMC C . n C 1 2 VAL 2 350 350 VAL VAL C . n C 1 3 GLN 3 351 351 GLN GLN C . n C 1 4 SER 4 352 352 SER SER C . n C 1 5 LYS 5 353 353 LYS LYS C . n C 1 6 ILE 6 354 354 ILE ILE C . n C 1 7 GLY 7 355 355 GLY GLY C . n C 1 8 SER 8 356 356 SER SER C . n C 1 9 LEU 9 357 357 LEU LEU C . n C 1 10 ASP 10 358 358 ASP ASP C . n C 1 11 ASN 11 359 359 ASN ASN C . n C 1 12 ILE 12 360 360 ILE ILE C . n C 1 13 THR 13 361 361 THR THR C . n C 1 14 HIA 14 362 362 HIA HIS C . n D 1 1 VP1 1 401 349 VP1 FMC D . n D 1 2 VAL 2 350 350 VAL VAL D . n D 1 3 GLN 3 351 351 GLN GLN D . n D 1 4 SER 4 352 352 SER SER D . n D 1 5 LYS 5 353 353 LYS LYS D . n D 1 6 ILE 6 354 354 ILE ILE D . n D 1 7 GLY 7 355 355 GLY GLY D . n D 1 8 SER 8 356 356 SER SER D . n D 1 9 LEU 9 357 357 LEU LEU D . n D 1 10 ASP 10 358 358 ASP ASP D . n D 1 11 ASN 11 359 359 ASN ASN D . n D 1 12 ILE 12 360 360 ILE ILE D . n D 1 13 THR 13 361 361 THR THR D . n D 1 14 HIA 14 362 362 HIA HIS D . n E 1 1 VP1 1 401 349 VP1 FMC E . n E 1 2 VAL 2 350 350 VAL VAL E . n E 1 3 GLN 3 351 351 GLN GLN E . n E 1 4 SER 4 352 352 SER SER E . n E 1 5 LYS 5 353 353 LYS LYS E . n E 1 6 ILE 6 354 354 ILE ILE E . n E 1 7 GLY 7 355 355 GLY GLY E . n E 1 8 SER 8 356 356 SER SER E . n E 1 9 LEU 9 357 357 LEU LEU E . n E 1 10 ASP 10 358 358 ASP ASP E . n E 1 11 ASN 11 359 359 ASN ASN E . n E 1 12 ILE 12 360 360 ILE ILE E . n E 1 13 THR 13 361 361 THR THR E . n E 1 14 HIA 14 362 362 HIA HIS E . n F 1 1 VP1 1 401 349 VP1 FMC F . n F 1 2 VAL 2 350 350 VAL VAL F . n F 1 3 GLN 3 351 351 GLN GLN F . n F 1 4 SER 4 352 352 SER SER F . n F 1 5 LYS 5 353 353 LYS LYS F . n F 1 6 ILE 6 354 354 ILE ILE F . n F 1 7 GLY 7 355 355 GLY GLY F . n F 1 8 SER 8 356 356 SER SER F . n F 1 9 LEU 9 357 357 LEU LEU F . n F 1 10 ASP 10 358 358 ASP ASP F . n F 1 11 ASN 11 359 359 ASN ASN F . n F 1 12 ILE 12 360 360 ILE ILE F . n F 1 13 THR 13 361 361 THR THR F . n F 1 14 HIA 14 362 362 HIA HIS F . n G 1 1 VP1 1 401 349 VP1 FMC G . n G 1 2 VAL 2 350 350 VAL VAL G . n G 1 3 GLN 3 351 351 GLN GLN G . n G 1 4 SER 4 352 352 SER SER G . n G 1 5 LYS 5 353 353 LYS LYS G . n G 1 6 ILE 6 354 354 ILE ILE G . n G 1 7 GLY 7 355 355 GLY GLY G . n G 1 8 SER 8 356 356 SER SER G . n G 1 9 LEU 9 357 357 LEU LEU G . n G 1 10 ASP 10 358 358 ASP ASP G . n G 1 11 ASN 11 359 359 ASN ASN G . n G 1 12 ILE 12 360 360 ILE ILE G . n G 1 13 THR 13 361 361 THR THR G . n G 1 14 HIA 14 362 362 HIA HIS G . n H 1 1 VP1 1 401 349 VP1 FMC H . n H 1 2 VAL 2 350 350 VAL VAL H . n H 1 3 GLN 3 351 351 GLN GLN H . n H 1 4 SER 4 352 352 SER SER H . n H 1 5 LYS 5 353 353 LYS LYS H . n H 1 6 ILE 6 354 354 ILE ILE H . n H 1 7 GLY 7 355 355 GLY GLY H . n H 1 8 SER 8 356 356 SER SER H . n H 1 9 LEU 9 357 357 LEU LEU H . n H 1 10 ASP 10 358 358 ASP ASP H . n H 1 11 ASN 11 359 359 ASN ASN H . n H 1 12 ILE 12 360 360 ILE ILE H . n H 1 13 THR 13 361 361 THR THR H . n H 1 14 HIA 14 362 362 HIA HIS H . n I 1 1 VP1 1 401 349 VP1 FMC I . n I 1 2 VAL 2 350 350 VAL VAL I . n I 1 3 GLN 3 351 351 GLN GLN I . n I 1 4 SER 4 352 352 SER SER I . n I 1 5 LYS 5 353 353 LYS LYS I . n I 1 6 ILE 6 354 354 ILE ILE I . n I 1 7 GLY 7 355 355 GLY GLY I . n I 1 8 SER 8 356 356 SER SER I . n I 1 9 LEU 9 357 357 LEU LEU I . n I 1 10 ASP 10 358 358 ASP ASP I . n I 1 11 ASN 11 359 359 ASN ASN I . n I 1 12 ILE 12 360 360 ILE ILE I . n I 1 13 THR 13 361 361 THR THR I . n I 1 14 HIA 14 362 362 HIA HIS I . n J 1 1 VP1 1 401 349 VP1 FMC J . n J 1 2 VAL 2 350 350 VAL VAL J . n J 1 3 GLN 3 351 351 GLN GLN J . n J 1 4 SER 4 352 352 SER SER J . n J 1 5 LYS 5 353 353 LYS LYS J . n J 1 6 ILE 6 354 354 ILE ILE J . n J 1 7 GLY 7 355 355 GLY GLY J . n J 1 8 SER 8 356 356 SER SER J . n J 1 9 LEU 9 357 357 LEU LEU J . n J 1 10 ASP 10 358 358 ASP ASP J . n J 1 11 ASN 11 359 359 ASN ASN J . n J 1 12 ILE 12 360 360 ILE ILE J . n J 1 13 THR 13 361 361 THR THR J . n J 1 14 HIA 14 362 362 HIA HIS J . n K 1 1 VP1 1 401 349 VP1 FMC K . n K 1 2 VAL 2 350 350 VAL VAL K . n K 1 3 GLN 3 351 351 GLN GLN K . n K 1 4 SER 4 352 352 SER SER K . n K 1 5 LYS 5 353 353 LYS LYS K . n K 1 6 ILE 6 354 354 ILE ILE K . n K 1 7 GLY 7 355 355 GLY GLY K . n K 1 8 SER 8 356 356 SER SER K . n K 1 9 LEU 9 357 357 LEU LEU K . n K 1 10 ASP 10 358 358 ASP ASP K . n K 1 11 ASN 11 359 359 ASN ASN K . n K 1 12 ILE 12 360 360 ILE ILE K . n K 1 13 THR 13 361 361 THR THR K . n K 1 14 HIA 14 362 362 HIA HIS K . n L 1 1 VP1 1 401 349 VP1 FMC L . n L 1 2 VAL 2 350 350 VAL VAL L . n L 1 3 GLN 3 351 351 GLN GLN L . n L 1 4 SER 4 352 352 SER SER L . n L 1 5 LYS 5 353 353 LYS LYS L . n L 1 6 ILE 6 354 354 ILE ILE L . n L 1 7 GLY 7 355 355 GLY GLY L . n L 1 8 SER 8 356 356 SER SER L . n L 1 9 LEU 9 357 357 LEU LEU L . n L 1 10 ASP 10 358 358 ASP ASP L . n L 1 11 ASN 11 359 359 ASN ASN L . n L 1 12 ILE 12 360 360 ILE ILE L . n L 1 13 THR 13 361 361 THR THR L . n L 1 14 HIA 14 362 362 HIA HIS L . n M 1 1 VP1 1 401 349 VP1 FMC M . n M 1 2 VAL 2 350 350 VAL VAL M . n M 1 3 GLN 3 351 351 GLN GLN M . n M 1 4 SER 4 352 352 SER SER M . n M 1 5 LYS 5 353 353 LYS LYS M . n M 1 6 ILE 6 354 354 ILE ILE M . n M 1 7 GLY 7 355 355 GLY GLY M . n M 1 8 SER 8 356 356 SER SER M . n M 1 9 LEU 9 357 357 LEU LEU M . n M 1 10 ASP 10 358 358 ASP ASP M . n M 1 11 ASN 11 359 359 ASN ASN M . n M 1 12 ILE 12 360 360 ILE ILE M . n M 1 13 THR 13 361 361 THR THR M . n M 1 14 HIA 14 362 362 HIA HIS M . n N 1 1 VP1 1 401 349 VP1 FMC N . n N 1 2 VAL 2 350 350 VAL VAL N . n N 1 3 GLN 3 351 351 GLN GLN N . n N 1 4 SER 4 352 352 SER SER N . n N 1 5 LYS 5 353 353 LYS LYS N . n N 1 6 ILE 6 354 354 ILE ILE N . n N 1 7 GLY 7 355 355 GLY GLY N . n N 1 8 SER 8 356 356 SER SER N . n N 1 9 LEU 9 357 357 LEU LEU N . n N 1 10 ASP 10 358 358 ASP ASP N . n N 1 11 ASN 11 359 359 ASN ASN N . n N 1 12 ILE 12 360 360 ILE ILE N . n N 1 13 THR 13 361 361 THR THR N . n N 1 14 HIA 14 362 362 HIA HIS N . n O 1 1 VP1 1 401 349 VP1 FMC O . n O 1 2 VAL 2 350 350 VAL VAL O . n O 1 3 GLN 3 351 351 GLN GLN O . n O 1 4 SER 4 352 352 SER SER O . n O 1 5 LYS 5 353 353 LYS LYS O . n O 1 6 ILE 6 354 354 ILE ILE O . n O 1 7 GLY 7 355 355 GLY GLY O . n O 1 8 SER 8 356 356 SER SER O . n O 1 9 LEU 9 357 357 LEU LEU O . n O 1 10 ASP 10 358 358 ASP ASP O . n O 1 11 ASN 11 359 359 ASN ASN O . n O 1 12 ILE 12 360 360 ILE ILE O . n O 1 13 THR 13 361 361 THR THR O . n O 1 14 HIA 14 362 362 HIA HIS O . n P 1 1 VP1 1 401 349 VP1 FMC P . n P 1 2 VAL 2 350 350 VAL VAL P . n P 1 3 GLN 3 351 351 GLN GLN P . n P 1 4 SER 4 352 352 SER SER P . n P 1 5 LYS 5 353 353 LYS LYS P . n P 1 6 ILE 6 354 354 ILE ILE P . n P 1 7 GLY 7 355 355 GLY GLY P . n P 1 8 SER 8 356 356 SER SER P . n P 1 9 LEU 9 357 357 LEU LEU P . n P 1 10 ASP 10 358 358 ASP ASP P . n P 1 11 ASN 11 359 359 ASN ASN P . n P 1 12 ILE 12 360 360 ILE ILE P . n P 1 13 THR 13 361 361 THR THR P . n P 1 14 HIA 14 362 362 HIA HIS P . n Q 1 1 VP1 1 401 349 VP1 FMC Q . n Q 1 2 VAL 2 350 350 VAL VAL Q . n Q 1 3 GLN 3 351 351 GLN GLN Q . n Q 1 4 SER 4 352 352 SER SER Q . n Q 1 5 LYS 5 353 353 LYS LYS Q . n Q 1 6 ILE 6 354 354 ILE ILE Q . n Q 1 7 GLY 7 355 355 GLY GLY Q . n Q 1 8 SER 8 356 356 SER SER Q . n Q 1 9 LEU 9 357 357 LEU LEU Q . n Q 1 10 ASP 10 358 358 ASP ASP Q . n Q 1 11 ASN 11 359 359 ASN ASN Q . n Q 1 12 ILE 12 360 360 ILE ILE Q . n Q 1 13 THR 13 361 361 THR THR Q . n Q 1 14 HIA 14 362 362 HIA HIS Q . n R 1 1 VP1 1 401 349 VP1 FMC R . n R 1 2 VAL 2 350 350 VAL VAL R . n R 1 3 GLN 3 351 351 GLN GLN R . n R 1 4 SER 4 352 352 SER SER R . n R 1 5 LYS 5 353 353 LYS LYS R . n R 1 6 ILE 6 354 354 ILE ILE R . n R 1 7 GLY 7 355 355 GLY GLY R . n R 1 8 SER 8 356 356 SER SER R . n R 1 9 LEU 9 357 357 LEU LEU R . n R 1 10 ASP 10 358 358 ASP ASP R . n R 1 11 ASN 11 359 359 ASN ASN R . n R 1 12 ILE 12 360 360 ILE ILE R . n R 1 13 THR 13 361 361 THR THR R . n R 1 14 HIA 14 362 362 HIA HIS R . n S 1 1 VP1 1 401 349 VP1 FMC S . n S 1 2 VAL 2 350 350 VAL VAL S . n S 1 3 GLN 3 351 351 GLN GLN S . n S 1 4 SER 4 352 352 SER SER S . n S 1 5 LYS 5 353 353 LYS LYS S . n S 1 6 ILE 6 354 354 ILE ILE S . n S 1 7 GLY 7 355 355 GLY GLY S . n S 1 8 SER 8 356 356 SER SER S . n S 1 9 LEU 9 357 357 LEU LEU S . n S 1 10 ASP 10 358 358 ASP ASP S . n S 1 11 ASN 11 359 359 ASN ASN S . n S 1 12 ILE 12 360 360 ILE ILE S . n S 1 13 THR 13 361 361 THR THR S . n S 1 14 HIA 14 362 362 HIA HIS S . n T 1 1 VP1 1 401 349 VP1 FMC T . n T 1 2 VAL 2 350 350 VAL VAL T . n T 1 3 GLN 3 351 351 GLN GLN T . n T 1 4 SER 4 352 352 SER SER T . n T 1 5 LYS 5 353 353 LYS LYS T . n T 1 6 ILE 6 354 354 ILE ILE T . n T 1 7 GLY 7 355 355 GLY GLY T . n T 1 8 SER 8 356 356 SER SER T . n T 1 9 LEU 9 357 357 LEU LEU T . n T 1 10 ASP 10 358 358 ASP ASP T . n T 1 11 ASN 11 359 359 ASN ASN T . n T 1 12 ILE 12 360 360 ILE ILE T . n T 1 13 THR 13 361 361 THR THR T . n T 1 14 HIA 14 362 362 HIA HIS T . n U 1 1 VP1 1 401 349 VP1 FMC U . n U 1 2 VAL 2 350 350 VAL VAL U . n U 1 3 GLN 3 351 351 GLN GLN U . n U 1 4 SER 4 352 352 SER SER U . n U 1 5 LYS 5 353 353 LYS LYS U . n U 1 6 ILE 6 354 354 ILE ILE U . n U 1 7 GLY 7 355 355 GLY GLY U . n U 1 8 SER 8 356 356 SER SER U . n U 1 9 LEU 9 357 357 LEU LEU U . n U 1 10 ASP 10 358 358 ASP ASP U . n U 1 11 ASN 11 359 359 ASN ASN U . n U 1 12 ILE 12 360 360 ILE ILE U . n U 1 13 THR 13 361 361 THR THR U . n U 1 14 HIA 14 362 362 HIA HIS U . n V 1 1 VP1 1 401 349 VP1 FMC V . n V 1 2 VAL 2 350 350 VAL VAL V . n V 1 3 GLN 3 351 351 GLN GLN V . n V 1 4 SER 4 352 352 SER SER V . n V 1 5 LYS 5 353 353 LYS LYS V . n V 1 6 ILE 6 354 354 ILE ILE V . n V 1 7 GLY 7 355 355 GLY GLY V . n V 1 8 SER 8 356 356 SER SER V . n V 1 9 LEU 9 357 357 LEU LEU V . n V 1 10 ASP 10 358 358 ASP ASP V . n V 1 11 ASN 11 359 359 ASN ASN V . n V 1 12 ILE 12 360 360 ILE ILE V . n V 1 13 THR 13 361 361 THR THR V . n V 1 14 HIA 14 362 362 HIA HIS V . n W 1 1 VP1 1 401 349 VP1 FMC W . n W 1 2 VAL 2 350 350 VAL VAL W . n W 1 3 GLN 3 351 351 GLN GLN W . n W 1 4 SER 4 352 352 SER SER W . n W 1 5 LYS 5 353 353 LYS LYS W . n W 1 6 ILE 6 354 354 ILE ILE W . n W 1 7 GLY 7 355 355 GLY GLY W . n W 1 8 SER 8 356 356 SER SER W . n W 1 9 LEU 9 357 357 LEU LEU W . n W 1 10 ASP 10 358 358 ASP ASP W . n W 1 11 ASN 11 359 359 ASN ASN W . n W 1 12 ILE 12 360 360 ILE ILE W . n W 1 13 THR 13 361 361 THR THR W . n W 1 14 HIA 14 362 362 HIA HIS W . n X 1 1 VP1 1 401 349 VP1 FMC X . n X 1 2 VAL 2 350 350 VAL VAL X . n X 1 3 GLN 3 351 351 GLN GLN X . n X 1 4 SER 4 352 352 SER SER X . n X 1 5 LYS 5 353 353 LYS LYS X . n X 1 6 ILE 6 354 354 ILE ILE X . n X 1 7 GLY 7 355 355 GLY GLY X . n X 1 8 SER 8 356 356 SER SER X . n X 1 9 LEU 9 357 357 LEU LEU X . n X 1 10 ASP 10 358 358 ASP ASP X . n X 1 11 ASN 11 359 359 ASN ASN X . n X 1 12 ILE 12 360 360 ILE ILE X . n X 1 13 THR 13 361 361 THR THR X . n X 1 14 HIA 14 362 362 HIA HIS X . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8OI0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8OI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8OI0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8OI0 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.007 ? 2856 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.662 ? 3888 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 9.685 ? 1296 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.053 ? 432 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 480 ? f_plane_restr ? ? # _struct.entry_id 8OI0 _struct.title 'Structure of the Fmoc-Tau-PAM4 Type 4 amyloid fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8OI0 _struct_keywords.text 'amyloid, tau, helical, cross-beta, fibril, neurodegeneration, Fmoc, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VQSKIGSLDNITH _struct_ref.pdbx_align_begin 667 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8OI0 A 2 ? 14 ? P10636 667 ? 679 ? 350 362 2 1 8OI0 B 2 ? 14 ? P10636 667 ? 679 ? 350 362 3 1 8OI0 C 2 ? 14 ? P10636 667 ? 679 ? 350 362 4 1 8OI0 D 2 ? 14 ? P10636 667 ? 679 ? 350 362 5 1 8OI0 E 2 ? 14 ? P10636 667 ? 679 ? 350 362 6 1 8OI0 F 2 ? 14 ? P10636 667 ? 679 ? 350 362 7 1 8OI0 G 2 ? 14 ? P10636 667 ? 679 ? 350 362 8 1 8OI0 H 2 ? 14 ? P10636 667 ? 679 ? 350 362 9 1 8OI0 I 2 ? 14 ? P10636 667 ? 679 ? 350 362 10 1 8OI0 J 2 ? 14 ? P10636 667 ? 679 ? 350 362 11 1 8OI0 K 2 ? 14 ? P10636 667 ? 679 ? 350 362 12 1 8OI0 L 2 ? 14 ? P10636 667 ? 679 ? 350 362 13 1 8OI0 M 2 ? 14 ? P10636 667 ? 679 ? 350 362 14 1 8OI0 N 2 ? 14 ? P10636 667 ? 679 ? 350 362 15 1 8OI0 O 2 ? 14 ? P10636 667 ? 679 ? 350 362 16 1 8OI0 P 2 ? 14 ? P10636 667 ? 679 ? 350 362 17 1 8OI0 Q 2 ? 14 ? P10636 667 ? 679 ? 350 362 18 1 8OI0 R 2 ? 14 ? P10636 667 ? 679 ? 350 362 19 1 8OI0 S 2 ? 14 ? P10636 667 ? 679 ? 350 362 20 1 8OI0 T 2 ? 14 ? P10636 667 ? 679 ? 350 362 21 1 8OI0 U 2 ? 14 ? P10636 667 ? 679 ? 350 362 22 1 8OI0 V 2 ? 14 ? P10636 667 ? 679 ? 350 362 23 1 8OI0 W 2 ? 14 ? P10636 667 ? 679 ? 350 362 24 1 8OI0 X 2 ? 14 ? P10636 667 ? 679 ? 350 362 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8OI0 VP1 A 1 ? UNP P10636 ? ? 'expression tag' 401 1 2 8OI0 VP1 B 1 ? UNP P10636 ? ? 'expression tag' 401 2 3 8OI0 VP1 C 1 ? UNP P10636 ? ? 'expression tag' 401 3 4 8OI0 VP1 D 1 ? UNP P10636 ? ? 'expression tag' 401 4 5 8OI0 VP1 E 1 ? UNP P10636 ? ? 'expression tag' 401 5 6 8OI0 VP1 F 1 ? UNP P10636 ? ? 'expression tag' 401 6 7 8OI0 VP1 G 1 ? UNP P10636 ? ? 'expression tag' 401 7 8 8OI0 VP1 H 1 ? UNP P10636 ? ? 'expression tag' 401 8 9 8OI0 VP1 I 1 ? UNP P10636 ? ? 'expression tag' 401 9 10 8OI0 VP1 J 1 ? UNP P10636 ? ? 'expression tag' 401 10 11 8OI0 VP1 K 1 ? UNP P10636 ? ? 'expression tag' 401 11 12 8OI0 VP1 L 1 ? UNP P10636 ? ? 'expression tag' 401 12 13 8OI0 VP1 M 1 ? UNP P10636 ? ? 'expression tag' 401 13 14 8OI0 VP1 N 1 ? UNP P10636 ? ? 'expression tag' 401 14 15 8OI0 VP1 O 1 ? UNP P10636 ? ? 'expression tag' 401 15 16 8OI0 VP1 P 1 ? UNP P10636 ? ? 'expression tag' 401 16 17 8OI0 VP1 Q 1 ? UNP P10636 ? ? 'expression tag' 401 17 18 8OI0 VP1 R 1 ? UNP P10636 ? ? 'expression tag' 401 18 19 8OI0 VP1 S 1 ? UNP P10636 ? ? 'expression tag' 401 19 20 8OI0 VP1 T 1 ? UNP P10636 ? ? 'expression tag' 401 20 21 8OI0 VP1 U 1 ? UNP P10636 ? ? 'expression tag' 401 21 22 8OI0 VP1 V 1 ? UNP P10636 ? ? 'expression tag' 401 22 23 8OI0 VP1 W 1 ? UNP P10636 ? ? 'expression tag' 401 23 24 8OI0 VP1 X 1 ? UNP P10636 ? ? 'expression tag' 401 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' 'ThT fluorescence assay' 2 1 'electron microscopy' 'Negative stain EM' 3 1 microscopy 'Atomic force microscopy' 4 1 'light scattering' 'FTIR spectroscopy' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 2 N ? ? ? 1_555 A VP1 1 C01 ? ? A VAL 350 A VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale both ? A THR 13 C ? ? ? 1_555 A HIA 14 N ? ? A THR 361 A HIA 362 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? B VAL 2 N ? ? ? 1_555 B VP1 1 C01 ? ? B VAL 350 B VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale4 covale both ? B THR 13 C ? ? ? 1_555 B HIA 14 N ? ? B THR 361 B HIA 362 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? C VAL 2 N ? ? ? 1_555 C VP1 1 C01 ? ? C VAL 350 C VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale6 covale both ? C THR 13 C ? ? ? 1_555 C HIA 14 N ? ? C THR 361 C HIA 362 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? D VAL 2 N ? ? ? 1_555 D VP1 1 C01 ? ? D VAL 350 D VP1 401 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale8 covale both ? D THR 13 C ? ? ? 1_555 D HIA 14 N ? ? D THR 361 D HIA 362 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? E VAL 2 N ? ? ? 1_555 E VP1 1 C01 ? ? E VAL 350 E VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale10 covale both ? E THR 13 C ? ? ? 1_555 E HIA 14 N ? ? E THR 361 E HIA 362 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? F VAL 2 N ? ? ? 1_555 F VP1 1 C01 ? ? F VAL 350 F VP1 401 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale12 covale both ? F THR 13 C ? ? ? 1_555 F HIA 14 N ? ? F THR 361 F HIA 362 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale13 covale both ? G VAL 2 N ? ? ? 1_555 G VP1 1 C01 ? ? G VAL 350 G VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale14 covale both ? G THR 13 C ? ? ? 1_555 G HIA 14 N ? ? G THR 361 G HIA 362 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale15 covale both ? H VAL 2 N ? ? ? 1_555 H VP1 1 C01 ? ? H VAL 350 H VP1 401 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale16 covale both ? H THR 13 C ? ? ? 1_555 H HIA 14 N ? ? H THR 361 H HIA 362 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale17 covale both ? I VAL 2 N ? ? ? 1_555 I VP1 1 C01 ? ? I VAL 350 I VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale18 covale both ? I THR 13 C ? ? ? 1_555 I HIA 14 N ? ? I THR 361 I HIA 362 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale19 covale both ? J VAL 2 N ? ? ? 1_555 J VP1 1 C01 ? ? J VAL 350 J VP1 401 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale20 covale both ? J THR 13 C ? ? ? 1_555 J HIA 14 N ? ? J THR 361 J HIA 362 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale21 covale both ? K VAL 2 N ? ? ? 1_555 K VP1 1 C01 ? ? K VAL 350 K VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale22 covale both ? K THR 13 C ? ? ? 1_555 K HIA 14 N ? ? K THR 361 K HIA 362 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale23 covale both ? L VAL 2 N ? ? ? 1_555 L VP1 1 C01 ? ? L VAL 350 L VP1 401 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale24 covale both ? L THR 13 C ? ? ? 1_555 L HIA 14 N ? ? L THR 361 L HIA 362 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale25 covale both ? M VAL 2 N ? ? ? 1_555 M VP1 1 C01 ? ? M VAL 350 M VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale26 covale both ? M THR 13 C ? ? ? 1_555 M HIA 14 N ? ? M THR 361 M HIA 362 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale27 covale both ? N VAL 2 N ? ? ? 1_555 N VP1 1 C01 ? ? N VAL 350 N VP1 401 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale28 covale both ? N THR 13 C ? ? ? 1_555 N HIA 14 N ? ? N THR 361 N HIA 362 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale29 covale both ? O VAL 2 N ? ? ? 1_555 O VP1 1 C01 ? ? O VAL 350 O VP1 401 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale30 covale both ? O THR 13 C ? ? ? 1_555 O HIA 14 N ? ? O THR 361 O HIA 362 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale31 covale both ? P VAL 2 N ? ? ? 1_555 P VP1 1 C01 ? ? P VAL 350 P VP1 401 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale32 covale both ? P THR 13 C ? ? ? 1_555 P HIA 14 N ? ? P THR 361 P HIA 362 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale33 covale both ? Q VAL 2 N ? ? ? 1_555 Q VP1 1 C01 ? ? Q VAL 350 Q VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale34 covale both ? Q THR 13 C ? ? ? 1_555 Q HIA 14 N ? ? Q THR 361 Q HIA 362 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale35 covale both ? R VAL 2 N ? ? ? 1_555 R VP1 1 C01 ? ? R VAL 350 R VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale36 covale both ? R THR 13 C ? ? ? 1_555 R HIA 14 N ? ? R THR 361 R HIA 362 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale37 covale both ? S VAL 2 N ? ? ? 1_555 S VP1 1 C01 ? ? S VAL 350 S VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale38 covale both ? S THR 13 C ? ? ? 1_555 S HIA 14 N ? ? S THR 361 S HIA 362 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale39 covale both ? T VAL 2 N ? ? ? 1_555 T VP1 1 C01 ? ? T VAL 350 T VP1 401 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale40 covale both ? T THR 13 C ? ? ? 1_555 T HIA 14 N ? ? T THR 361 T HIA 362 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale41 covale both ? U VAL 2 N ? ? ? 1_555 U VP1 1 C01 ? ? U VAL 350 U VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale42 covale both ? U THR 13 C ? ? ? 1_555 U HIA 14 N ? ? U THR 361 U HIA 362 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale43 covale both ? V VAL 2 N ? ? ? 1_555 V VP1 1 C01 ? ? V VAL 350 V VP1 401 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale44 covale both ? V THR 13 C ? ? ? 1_555 V HIA 14 N ? ? V THR 361 V HIA 362 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale45 covale both ? W VAL 2 N ? ? ? 1_555 W VP1 1 C01 ? ? W VAL 350 W VP1 401 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale46 covale both ? W THR 13 C ? ? ? 1_555 W HIA 14 N ? ? W THR 361 W HIA 362 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale47 covale both ? X VAL 2 N ? ? ? 1_555 X VP1 1 C01 ? ? X VAL 350 X VP1 401 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale48 covale both ? X THR 13 C ? ? ? 1_555 X HIA 14 N ? ? X THR 361 X HIA 362 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? AB6 ? 3 ? AB7 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB6 1 2 ? parallel AB6 2 3 ? parallel AB7 1 2 ? parallel AB7 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 5 ? ILE A 6 ? LYS A 353 ILE A 354 AA1 2 LYS I 5 ? ILE I 6 ? LYS I 353 ILE I 354 AA1 3 LYS Q 5 ? ILE Q 6 ? LYS Q 353 ILE Q 354 AA2 1 ASP A 10 ? THR A 13 ? ASP A 358 THR A 361 AA2 2 ASP I 10 ? THR I 13 ? ASP I 358 THR I 361 AA2 3 ASP Q 10 ? THR Q 13 ? ASP Q 358 THR Q 361 AA3 1 LYS B 5 ? ILE B 6 ? LYS B 353 ILE B 354 AA3 2 LYS J 5 ? ILE J 6 ? LYS J 353 ILE J 354 AA3 3 LYS R 5 ? ILE R 6 ? LYS R 353 ILE R 354 AA4 1 LEU B 9 ? THR B 13 ? LEU B 357 THR B 361 AA4 2 LEU J 9 ? THR J 13 ? LEU J 357 THR J 361 AA4 3 LEU R 9 ? THR R 13 ? LEU R 357 THR R 361 AA5 1 LYS C 5 ? ILE C 6 ? LYS C 353 ILE C 354 AA5 2 LYS K 5 ? ILE K 6 ? LYS K 353 ILE K 354 AA5 3 LYS S 5 ? ILE S 6 ? LYS S 353 ILE S 354 AA6 1 ASP C 10 ? THR C 13 ? ASP C 358 THR C 361 AA6 2 ASP K 10 ? THR K 13 ? ASP K 358 THR K 361 AA6 3 ASP S 10 ? THR S 13 ? ASP S 358 THR S 361 AA7 1 LYS D 5 ? ILE D 6 ? LYS D 353 ILE D 354 AA7 2 LYS L 5 ? ILE L 6 ? LYS L 353 ILE L 354 AA7 3 LYS T 5 ? ILE T 6 ? LYS T 353 ILE T 354 AA8 1 LEU D 9 ? THR D 13 ? LEU D 357 THR D 361 AA8 2 LEU L 9 ? THR L 13 ? LEU L 357 THR L 361 AA8 3 LEU T 9 ? THR T 13 ? LEU T 357 THR T 361 AA9 1 LYS E 5 ? ILE E 6 ? LYS E 353 ILE E 354 AA9 2 LYS M 5 ? ILE M 6 ? LYS M 353 ILE M 354 AA9 3 LYS U 5 ? ILE U 6 ? LYS U 353 ILE U 354 AB1 1 ASP E 10 ? THR E 13 ? ASP E 358 THR E 361 AB1 2 ASP M 10 ? THR M 13 ? ASP M 358 THR M 361 AB1 3 ASP U 10 ? THR U 13 ? ASP U 358 THR U 361 AB2 1 LYS F 5 ? ILE F 6 ? LYS F 353 ILE F 354 AB2 2 LYS N 5 ? ILE N 6 ? LYS N 353 ILE N 354 AB2 3 LYS V 5 ? ILE V 6 ? LYS V 353 ILE V 354 AB3 1 LEU F 9 ? THR F 13 ? LEU F 357 THR F 361 AB3 2 LEU N 9 ? THR N 13 ? LEU N 357 THR N 361 AB3 3 LEU V 9 ? THR V 13 ? LEU V 357 THR V 361 AB4 1 LYS G 5 ? ILE G 6 ? LYS G 353 ILE G 354 AB4 2 LYS O 5 ? ILE O 6 ? LYS O 353 ILE O 354 AB4 3 LYS W 5 ? ILE W 6 ? LYS W 353 ILE W 354 AB5 1 ASP G 10 ? THR G 13 ? ASP G 358 THR G 361 AB5 2 ASP O 10 ? THR O 13 ? ASP O 358 THR O 361 AB5 3 ASP W 10 ? THR W 13 ? ASP W 358 THR W 361 AB6 1 LYS H 5 ? ILE H 6 ? LYS H 353 ILE H 354 AB6 2 LYS P 5 ? ILE P 6 ? LYS P 353 ILE P 354 AB6 3 LYS X 5 ? ILE X 6 ? LYS X 353 ILE X 354 AB7 1 LEU H 9 ? THR H 13 ? LEU H 357 THR H 361 AB7 2 LEU P 9 ? THR P 13 ? LEU P 357 THR P 361 AB7 3 LEU X 9 ? THR X 13 ? LEU X 357 THR X 361 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 6 ? N ILE A 354 O LYS I 5 ? O LYS I 353 AA1 2 3 N ILE I 6 ? N ILE I 354 O LYS Q 5 ? O LYS Q 353 AA2 1 2 N ASP A 10 ? N ASP A 358 O ASN I 11 ? O ASN I 359 AA2 2 3 N ASP I 10 ? N ASP I 358 O ASN Q 11 ? O ASN Q 359 AA3 1 2 N LYS B 5 ? N LYS B 353 O ILE J 6 ? O ILE J 354 AA3 2 3 N LYS J 5 ? N LYS J 353 O ILE R 6 ? O ILE R 354 AA4 1 2 N ASP B 10 ? N ASP B 358 O ASN J 11 ? O ASN J 359 AA4 2 3 N ASP J 10 ? N ASP J 358 O ASN R 11 ? O ASN R 359 AA5 1 2 N LYS C 5 ? N LYS C 353 O ILE K 6 ? O ILE K 354 AA5 2 3 N LYS K 5 ? N LYS K 353 O ILE S 6 ? O ILE S 354 AA6 1 2 N ASN C 11 ? N ASN C 359 O ASP K 10 ? O ASP K 358 AA6 2 3 N ASN K 11 ? N ASN K 359 O ASP S 10 ? O ASP S 358 AA7 1 2 N ILE D 6 ? N ILE D 354 O LYS L 5 ? O LYS L 353 AA7 2 3 N ILE L 6 ? N ILE L 354 O LYS T 5 ? O LYS T 353 AA8 1 2 N ASN D 11 ? N ASN D 359 O ASP L 10 ? O ASP L 358 AA8 2 3 N ASN L 11 ? N ASN L 359 O ASP T 10 ? O ASP T 358 AA9 1 2 N ILE E 6 ? N ILE E 354 O LYS M 5 ? O LYS M 353 AA9 2 3 N ILE M 6 ? N ILE M 354 O LYS U 5 ? O LYS U 353 AB1 1 2 N ASP E 10 ? N ASP E 358 O ASN M 11 ? O ASN M 359 AB1 2 3 N ASP M 10 ? N ASP M 358 O ASN U 11 ? O ASN U 359 AB2 1 2 N LYS F 5 ? N LYS F 353 O ILE N 6 ? O ILE N 354 AB2 2 3 N LYS N 5 ? N LYS N 353 O ILE V 6 ? O ILE V 354 AB3 1 2 N ASP F 10 ? N ASP F 358 O ASN N 11 ? O ASN N 359 AB3 2 3 N ILE N 12 ? N ILE N 360 O THR V 13 ? O THR V 361 AB4 1 2 N LYS G 5 ? N LYS G 353 O ILE O 6 ? O ILE O 354 AB4 2 3 N LYS O 5 ? N LYS O 353 O ILE W 6 ? O ILE W 354 AB5 1 2 N ASN G 11 ? N ASN G 359 O ASP O 10 ? O ASP O 358 AB5 2 3 N ASN O 11 ? N ASN O 359 O ASP W 10 ? O ASP W 358 AB6 1 2 N ILE H 6 ? N ILE H 354 O LYS P 5 ? O LYS P 353 AB6 2 3 N ILE P 6 ? N ILE P 354 O LYS X 5 ? O LYS X 353 AB7 1 2 N THR H 13 ? N THR H 361 O ILE P 12 ? O ILE P 360 AB7 2 3 N THR P 13 ? N THR P 361 O ILE X 12 ? O ILE X 360 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O02 L VP1 401 ? ? OG T SER 352 ? ? 2.04 2 1 O02 D VP1 401 ? ? OG L SER 352 ? ? 2.13 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HIA 14 A HIA 362 ? HIS 'modified residue' 2 B HIA 14 B HIA 362 ? HIS 'modified residue' 3 C HIA 14 C HIA 362 ? HIS 'modified residue' 4 D HIA 14 D HIA 362 ? HIS 'modified residue' 5 E HIA 14 E HIA 362 ? HIS 'modified residue' 6 F HIA 14 F HIA 362 ? HIS 'modified residue' 7 G HIA 14 G HIA 362 ? HIS 'modified residue' 8 H HIA 14 H HIA 362 ? HIS 'modified residue' 9 I HIA 14 I HIA 362 ? HIS 'modified residue' 10 J HIA 14 J HIA 362 ? HIS 'modified residue' 11 K HIA 14 K HIA 362 ? HIS 'modified residue' 12 L HIA 14 L HIA 362 ? HIS 'modified residue' 13 M HIA 14 M HIA 362 ? HIS 'modified residue' 14 N HIA 14 N HIA 362 ? HIS 'modified residue' 15 O HIA 14 O HIA 362 ? HIS 'modified residue' 16 P HIA 14 P HIA 362 ? HIS 'modified residue' 17 Q HIA 14 Q HIA 362 ? HIS 'modified residue' 18 R HIA 14 R HIA 362 ? HIS 'modified residue' 19 S HIA 14 S HIA 362 ? HIS 'modified residue' 20 T HIA 14 T HIA 362 ? HIS 'modified residue' 21 U HIA 14 U HIA 362 ? HIS 'modified residue' 22 V HIA 14 V HIA 362 ? HIS 'modified residue' 23 W HIA 14 W HIA 362 ? HIS 'modified residue' 24 X HIA 14 X HIA 362 ? HIS 'modified residue' # _pdbx_entry_details.entry_id 8OI0 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8OI0 _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details 'Initial model edited in coot' _em_3d_fitting.overall_b_value 64 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # loop_ _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.details _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id 1 1 8OHP A ? ? A ? PDB 'experimental model' 8OHP 1 2 1 8OHP B ? ? B ? PDB 'experimental model' 8OHP 1 # _em_3d_reconstruction.entry_id 8OI0 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 14404 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'Peptide resuspended in MilliQ water for aggregation reaction' _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Amyloid fibril form 2b of Tau-PAM4 peptide adducted with the Fmoc protection group' _em_entity_assembly.details 'Synthesised peptide assembled into amyloid fibril' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 8OI0 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8OI0 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'EMS Lacey Carbon' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8OI0 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 279 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8OI0 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLN N N N N 34 GLN CA C N S 35 GLN C C N N 36 GLN O O N N 37 GLN CB C N N 38 GLN CG C N N 39 GLN CD C N N 40 GLN OE1 O N N 41 GLN NE2 N N N 42 GLN OXT O N N 43 GLN H H N N 44 GLN H2 H N N 45 GLN HA H N N 46 GLN HB2 H N N 47 GLN HB3 H N N 48 GLN HG2 H N N 49 GLN HG3 H N N 50 GLN HE21 H N N 51 GLN HE22 H N N 52 GLN HXT H N N 53 GLY N N N N 54 GLY CA C N N 55 GLY C C N N 56 GLY O O N N 57 GLY OXT O N N 58 GLY H H N N 59 GLY H2 H N N 60 GLY HA2 H N N 61 GLY HA3 H N N 62 GLY HXT H N N 63 HIA N N N N 64 HIA CA C N S 65 HIA CB C N N 66 HIA CG C Y N 67 HIA ND1 N Y N 68 HIA CD2 C Y N 69 HIA CE1 C Y N 70 HIA NE2 N Y N 71 HIA C C N N 72 HIA O O N N 73 HIA NXT N N N 74 HIA H H N N 75 HIA H2 H N N 76 HIA HA H N N 77 HIA HB2 H N N 78 HIA HB3 H N N 79 HIA HD1 H N N 80 HIA HD2 H N N 81 HIA HE1 H N N 82 HIA HXT1 H N N 83 HIA HXT2 H N N 84 ILE N N N N 85 ILE CA C N S 86 ILE C C N N 87 ILE O O N N 88 ILE CB C N S 89 ILE CG1 C N N 90 ILE CG2 C N N 91 ILE CD1 C N N 92 ILE OXT O N N 93 ILE H H N N 94 ILE H2 H N N 95 ILE HA H N N 96 ILE HB H N N 97 ILE HG12 H N N 98 ILE HG13 H N N 99 ILE HG21 H N N 100 ILE HG22 H N N 101 ILE HG23 H N N 102 ILE HD11 H N N 103 ILE HD12 H N N 104 ILE HD13 H N N 105 ILE HXT H N N 106 LEU N N N N 107 LEU CA C N S 108 LEU C C N N 109 LEU O O N N 110 LEU CB C N N 111 LEU CG C N N 112 LEU CD1 C N N 113 LEU CD2 C N N 114 LEU OXT O N N 115 LEU H H N N 116 LEU H2 H N N 117 LEU HA H N N 118 LEU HB2 H N N 119 LEU HB3 H N N 120 LEU HG H N N 121 LEU HD11 H N N 122 LEU HD12 H N N 123 LEU HD13 H N N 124 LEU HD21 H N N 125 LEU HD22 H N N 126 LEU HD23 H N N 127 LEU HXT H N N 128 LYS N N N N 129 LYS CA C N S 130 LYS C C N N 131 LYS O O N N 132 LYS CB C N N 133 LYS CG C N N 134 LYS CD C N N 135 LYS CE C N N 136 LYS NZ N N N 137 LYS OXT O N N 138 LYS H H N N 139 LYS H2 H N N 140 LYS HA H N N 141 LYS HB2 H N N 142 LYS HB3 H N N 143 LYS HG2 H N N 144 LYS HG3 H N N 145 LYS HD2 H N N 146 LYS HD3 H N N 147 LYS HE2 H N N 148 LYS HE3 H N N 149 LYS HZ1 H N N 150 LYS HZ2 H N N 151 LYS HZ3 H N N 152 LYS HXT H N N 153 SER N N N N 154 SER CA C N S 155 SER C C N N 156 SER O O N N 157 SER CB C N N 158 SER OG O N N 159 SER OXT O N N 160 SER H H N N 161 SER H2 H N N 162 SER HA H N N 163 SER HB2 H N N 164 SER HB3 H N N 165 SER HG H N N 166 SER HXT H N N 167 THR N N N N 168 THR CA C N S 169 THR C C N N 170 THR O O N N 171 THR CB C N R 172 THR OG1 O N N 173 THR CG2 C N N 174 THR OXT O N N 175 THR H H N N 176 THR H2 H N N 177 THR HA H N N 178 THR HB H N N 179 THR HG1 H N N 180 THR HG21 H N N 181 THR HG22 H N N 182 THR HG23 H N N 183 THR HXT H N N 184 VAL N N N N 185 VAL CA C N S 186 VAL C C N N 187 VAL O O N N 188 VAL CB C N N 189 VAL CG1 C N N 190 VAL CG2 C N N 191 VAL OXT O N N 192 VAL H H N N 193 VAL H2 H N N 194 VAL HA H N N 195 VAL HB H N N 196 VAL HG11 H N N 197 VAL HG12 H N N 198 VAL HG13 H N N 199 VAL HG21 H N N 200 VAL HG22 H N N 201 VAL HG23 H N N 202 VAL HXT H N N 203 VP1 C01 C N N 204 VP1 C04 C N N 205 VP1 C05 C N N 206 VP1 C06 C Y N 207 VP1 C07 C Y N 208 VP1 C08 C Y N 209 VP1 C09 C Y N 210 VP1 C10 C Y N 211 VP1 C11 C Y N 212 VP1 C12 C Y N 213 VP1 C13 C Y N 214 VP1 C14 C Y N 215 VP1 C15 C Y N 216 VP1 C16 C Y N 217 VP1 C17 C Y N 218 VP1 O02 O N N 219 VP1 O03 O N N 220 VP1 H2 H N N 221 VP1 H3 H N N 222 VP1 H4 H N N 223 VP1 H5 H N N 224 VP1 H6 H N N 225 VP1 H7 H N N 226 VP1 H8 H N N 227 VP1 H9 H N N 228 VP1 H10 H N N 229 VP1 H11 H N N 230 VP1 H12 H N N 231 VP1 CL1 CL N N 232 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLN N CA sing N N 32 GLN N H sing N N 33 GLN N H2 sing N N 34 GLN CA C sing N N 35 GLN CA CB sing N N 36 GLN CA HA sing N N 37 GLN C O doub N N 38 GLN C OXT sing N N 39 GLN CB CG sing N N 40 GLN CB HB2 sing N N 41 GLN CB HB3 sing N N 42 GLN CG CD sing N N 43 GLN CG HG2 sing N N 44 GLN CG HG3 sing N N 45 GLN CD OE1 doub N N 46 GLN CD NE2 sing N N 47 GLN NE2 HE21 sing N N 48 GLN NE2 HE22 sing N N 49 GLN OXT HXT sing N N 50 GLY N CA sing N N 51 GLY N H sing N N 52 GLY N H2 sing N N 53 GLY CA C sing N N 54 GLY CA HA2 sing N N 55 GLY CA HA3 sing N N 56 GLY C O doub N N 57 GLY C OXT sing N N 58 GLY OXT HXT sing N N 59 HIA N CA sing N N 60 HIA N H sing N N 61 HIA N H2 sing N N 62 HIA CA CB sing N N 63 HIA CA C sing N N 64 HIA CA HA sing N N 65 HIA CB CG sing N N 66 HIA CB HB2 sing N N 67 HIA CB HB3 sing N N 68 HIA CG ND1 sing Y N 69 HIA CG CD2 doub Y N 70 HIA ND1 CE1 sing Y N 71 HIA ND1 HD1 sing N N 72 HIA CD2 NE2 sing Y N 73 HIA CD2 HD2 sing N N 74 HIA CE1 NE2 doub Y N 75 HIA CE1 HE1 sing N N 76 HIA C O doub N N 77 HIA C NXT sing N N 78 HIA NXT HXT1 sing N N 79 HIA NXT HXT2 sing N N 80 ILE N CA sing N N 81 ILE N H sing N N 82 ILE N H2 sing N N 83 ILE CA C sing N N 84 ILE CA CB sing N N 85 ILE CA HA sing N N 86 ILE C O doub N N 87 ILE C OXT sing N N 88 ILE CB CG1 sing N N 89 ILE CB CG2 sing N N 90 ILE CB HB sing N N 91 ILE CG1 CD1 sing N N 92 ILE CG1 HG12 sing N N 93 ILE CG1 HG13 sing N N 94 ILE CG2 HG21 sing N N 95 ILE CG2 HG22 sing N N 96 ILE CG2 HG23 sing N N 97 ILE CD1 HD11 sing N N 98 ILE CD1 HD12 sing N N 99 ILE CD1 HD13 sing N N 100 ILE OXT HXT sing N N 101 LEU N CA sing N N 102 LEU N H sing N N 103 LEU N H2 sing N N 104 LEU CA C sing N N 105 LEU CA CB sing N N 106 LEU CA HA sing N N 107 LEU C O doub N N 108 LEU C OXT sing N N 109 LEU CB CG sing N N 110 LEU CB HB2 sing N N 111 LEU CB HB3 sing N N 112 LEU CG CD1 sing N N 113 LEU CG CD2 sing N N 114 LEU CG HG sing N N 115 LEU CD1 HD11 sing N N 116 LEU CD1 HD12 sing N N 117 LEU CD1 HD13 sing N N 118 LEU CD2 HD21 sing N N 119 LEU CD2 HD22 sing N N 120 LEU CD2 HD23 sing N N 121 LEU OXT HXT sing N N 122 LYS N CA sing N N 123 LYS N H sing N N 124 LYS N H2 sing N N 125 LYS CA C sing N N 126 LYS CA CB sing N N 127 LYS CA HA sing N N 128 LYS C O doub N N 129 LYS C OXT sing N N 130 LYS CB CG sing N N 131 LYS CB HB2 sing N N 132 LYS CB HB3 sing N N 133 LYS CG CD sing N N 134 LYS CG HG2 sing N N 135 LYS CG HG3 sing N N 136 LYS CD CE sing N N 137 LYS CD HD2 sing N N 138 LYS CD HD3 sing N N 139 LYS CE NZ sing N N 140 LYS CE HE2 sing N N 141 LYS CE HE3 sing N N 142 LYS NZ HZ1 sing N N 143 LYS NZ HZ2 sing N N 144 LYS NZ HZ3 sing N N 145 LYS OXT HXT sing N N 146 SER N CA sing N N 147 SER N H sing N N 148 SER N H2 sing N N 149 SER CA C sing N N 150 SER CA CB sing N N 151 SER CA HA sing N N 152 SER C O doub N N 153 SER C OXT sing N N 154 SER CB OG sing N N 155 SER CB HB2 sing N N 156 SER CB HB3 sing N N 157 SER OG HG sing N N 158 SER OXT HXT sing N N 159 THR N CA sing N N 160 THR N H sing N N 161 THR N H2 sing N N 162 THR CA C sing N N 163 THR CA CB sing N N 164 THR CA HA sing N N 165 THR C O doub N N 166 THR C OXT sing N N 167 THR CB OG1 sing N N 168 THR CB CG2 sing N N 169 THR CB HB sing N N 170 THR OG1 HG1 sing N N 171 THR CG2 HG21 sing N N 172 THR CG2 HG22 sing N N 173 THR CG2 HG23 sing N N 174 THR OXT HXT sing N N 175 VAL N CA sing N N 176 VAL N H sing N N 177 VAL N H2 sing N N 178 VAL CA C sing N N 179 VAL CA CB sing N N 180 VAL CA HA sing N N 181 VAL C O doub N N 182 VAL C OXT sing N N 183 VAL CB CG1 sing N N 184 VAL CB CG2 sing N N 185 VAL CB HB sing N N 186 VAL CG1 HG11 sing N N 187 VAL CG1 HG12 sing N N 188 VAL CG1 HG13 sing N N 189 VAL CG2 HG21 sing N N 190 VAL CG2 HG22 sing N N 191 VAL CG2 HG23 sing N N 192 VAL OXT HXT sing N N 193 VP1 C09 C08 doub Y N 194 VP1 C09 C10 sing Y N 195 VP1 C08 C07 sing Y N 196 VP1 C10 C11 doub Y N 197 VP1 C07 C06 doub Y N 198 VP1 C11 C06 sing Y N 199 VP1 C11 C17 sing N N 200 VP1 C06 C05 sing N N 201 VP1 C16 C17 doub Y N 202 VP1 C16 C15 sing Y N 203 VP1 C17 C12 sing Y N 204 VP1 O02 C01 doub N N 205 VP1 C04 C05 sing N N 206 VP1 C04 O03 sing N N 207 VP1 C15 C14 doub Y N 208 VP1 C05 C12 sing N N 209 VP1 C12 C13 doub Y N 210 VP1 C01 O03 sing N N 211 VP1 C14 C13 sing Y N 212 VP1 C04 H2 sing N N 213 VP1 C04 H3 sing N N 214 VP1 C05 H4 sing N N 215 VP1 C07 H5 sing N N 216 VP1 C08 H6 sing N N 217 VP1 C09 H7 sing N N 218 VP1 C10 H8 sing N N 219 VP1 C13 H9 sing N N 220 VP1 C14 H10 sing N N 221 VP1 C15 H11 sing N N 222 VP1 C16 H12 sing N N 223 VP1 C01 CL1 sing N N 224 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.08 _em_helical_entity.axial_rise_per_subunit 4.80 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 5 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 32 _em_image_recording.details 'Movies were collected as 1204 EER frames compressed and re-grouped into 35 TIF fractions' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1957 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'TFS Selectris' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 520390 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? crYOLO 1.8 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 3.0 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.14 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.8.9 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 4.0 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4.0 CLASSIFICATION ? 11 1 ? ? RELION 4.0 RECONSTRUCTION ? 12 1 ? ? RELION 4.0 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.17.1: # _em_specimen.concentration 0.6 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Research Foundation - Flanders (FWO)' _pdbx_audit_support.country Belgium _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8OHP # _atom_sites.entry_id 8OI0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_