HEADER HYDROLASE 22-MAR-23 8OI3 TITLE STRUCTURE OF NOPD WITH ATSUMO2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE III EFFECTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 2; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: ATSUMO2; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM; SOURCE 3 ORGANISM_TAXID: 374; SOURCE 4 GENE: NOPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 9 ORGANISM_COMMON: THALE CRESS; SOURCE 10 ORGANISM_TAXID: 3702; SOURCE 11 GENE: SUMO2, SUM2, AT5G55160, MCO15.11; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUMO PROTEASE, COMPLEX, PLANT SUMO2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.REVERTER,Y.LI REVDAT 3 04-MAR-26 8OI3 1 REMARK REVDAT 2 16-OCT-24 8OI3 1 JRNL LINK REVDAT 1 03-APR-24 8OI3 0 JRNL AUTH Y.LI,J.PEREZ-GIL,L.M.LOIS,N.VAREJAO,D.REVERTER JRNL TITL BROAD-SPECTRUM UBIQUITIN/UBIQUITIN-LIKE DECONJUGATION JRNL TITL 2 ACTIVITY OF THE RHIZOBIAL EFFECTOR NOPD FROM BRADYRHIZOBIUM JRNL TITL 3 (SP. XS1150). JRNL REF COMMUN BIOL V. 7 644 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38802699 JRNL DOI 10.1038/S42003-024-06344-W REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.9 REMARK 3 NUMBER OF REFLECTIONS : 76875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5200 - 4.5500 1.00 3713 212 0.1943 0.2127 REMARK 3 2 4.5500 - 3.6100 1.00 3628 141 0.1555 0.1768 REMARK 3 3 3.6100 - 3.1600 1.00 3570 165 0.1573 0.1693 REMARK 3 4 3.1600 - 2.8700 1.00 3540 163 0.1623 0.1900 REMARK 3 5 2.8700 - 2.6600 1.00 3512 182 0.1686 0.1926 REMARK 3 6 2.6600 - 2.5000 1.00 3455 232 0.1642 0.1745 REMARK 3 7 2.5000 - 2.3800 1.00 3439 221 0.1609 0.2104 REMARK 3 8 2.3800 - 2.2800 1.00 3473 215 0.1624 0.2081 REMARK 3 9 2.2800 - 2.1900 1.00 3458 205 0.1705 0.1788 REMARK 3 10 2.1900 - 2.1100 1.00 3486 183 0.1772 0.1945 REMARK 3 11 2.1100 - 2.0500 1.00 3456 193 0.1783 0.1907 REMARK 3 12 2.0500 - 1.9900 1.00 3460 186 0.1861 0.2202 REMARK 3 13 1.9900 - 1.9400 1.00 3476 177 0.1911 0.2081 REMARK 3 14 1.9400 - 1.8900 0.99 3383 206 0.2009 0.2604 REMARK 3 15 1.8900 - 1.8500 0.94 3250 178 0.2116 0.2400 REMARK 3 16 1.8500 - 1.8100 0.88 3083 150 0.2169 0.2254 REMARK 3 17 1.8100 - 1.7700 0.85 2937 149 0.2304 0.2837 REMARK 3 18 1.7700 - 1.7400 0.81 2806 122 0.2441 0.2843 REMARK 3 19 1.7400 - 1.7100 0.77 2674 122 0.2494 0.2637 REMARK 3 20 1.7100 - 1.6800 0.71 2426 145 0.2507 0.2874 REMARK 3 21 1.6800 - 1.6500 0.59 2026 121 0.2614 0.3593 REMARK 3 22 1.6500 - 1.6200 0.46 1601 72 0.2615 0.3177 REMARK 3 23 1.6200 - 1.6000 0.34 1173 67 0.2688 0.3680 REMARK 3 24 1.6000 - 1.5800 0.22 746 43 0.2815 0.2943 REMARK 3 25 1.5800 - 1.5600 0.14 494 23 0.2905 0.3395 REMARK 3 26 1.5600 - 1.5400 0.10 362 15 0.3167 0.3355 REMARK 3 27 1.5400 - 1.5200 0.06 210 11 0.3280 0.3384 REMARK 3 28 1.5200 - 1.5000 0.04 127 12 0.2989 0.3649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 30.1267 4.0871 19.0783 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1508 REMARK 3 T33: 0.1544 T12: -0.0165 REMARK 3 T13: -0.0099 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 1.7870 L22: -0.0343 REMARK 3 L33: -0.0769 L12: -0.3232 REMARK 3 L13: -0.1999 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.0345 S13: 0.0066 REMARK 3 S21: 0.0048 S22: -0.0104 S23: 0.0072 REMARK 3 S31: 0.0142 S32: 0.0023 S33: -0.0097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 49.522 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: ALPHAFOLD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE 7.0, 50% V/V MPD, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.42550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.24250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.41300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.24250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.42550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.41300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 809 REMARK 465 GLY A 810 REMARK 465 SER A 811 REMARK 465 SER A 812 REMARK 465 HIS A 813 REMARK 465 HIS A 814 REMARK 465 HIS A 815 REMARK 465 HIS A 816 REMARK 465 HIS A 817 REMARK 465 HIS A 818 REMARK 465 SER A 819 REMARK 465 SER A 820 REMARK 465 GLY A 821 REMARK 465 LEU A 822 REMARK 465 VAL A 823 REMARK 465 PRO A 824 REMARK 465 ARG A 825 REMARK 465 GLY A 826 REMARK 465 SER A 827 REMARK 465 HIS A 828 REMARK 465 GLY A 1012 REMARK 465 VAL A 1013 REMARK 465 GLY A 1014 REMARK 465 PHE A 1015 REMARK 465 ASN A 1016 REMARK 465 MET B 809 REMARK 465 GLY B 810 REMARK 465 SER B 811 REMARK 465 SER B 812 REMARK 465 HIS B 813 REMARK 465 HIS B 814 REMARK 465 HIS B 815 REMARK 465 HIS B 816 REMARK 465 HIS B 817 REMARK 465 HIS B 818 REMARK 465 SER B 819 REMARK 465 SER B 820 REMARK 465 GLY B 821 REMARK 465 LEU B 822 REMARK 465 VAL B 823 REMARK 465 PRO B 824 REMARK 465 ARG B 825 REMARK 465 GLY B 826 REMARK 465 SER B 827 REMARK 465 HIS B 828 REMARK 465 GLY B 1012 REMARK 465 VAL B 1013 REMARK 465 GLY B 1014 REMARK 465 PHE B 1015 REMARK 465 ASN B 1016 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 PRO C 5 REMARK 465 GLU C 6 REMARK 465 GLU C 7 REMARK 465 ASP C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 10 REMARK 465 PRO C 11 REMARK 465 ASP C 12 REMARK 465 GLN C 13 REMARK 465 GLY C 14 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 THR D 4 REMARK 465 PRO D 5 REMARK 465 GLU D 6 REMARK 465 GLU D 7 REMARK 465 ASP D 8 REMARK 465 LYS D 9 REMARK 465 LYS D 10 REMARK 465 PRO D 11 REMARK 465 ASP D 12 REMARK 465 GLN D 13 REMARK 465 GLY D 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 971 H2 AYE A 1101 1.24 REMARK 500 SG CYS B 971 H2 AYE B 1101 1.24 REMARK 500 HH22 ARG B 891 O HOH B 1202 1.40 REMARK 500 HE ARG B 863 OD2 ASP B 896 1.56 REMARK 500 HH TYR B 933 O HOH B 1201 1.58 REMARK 500 OE2 GLU D 78 O HOH D 201 1.60 REMARK 500 O HOH A 1218 O HOH A 1224 1.89 REMARK 500 O HOH D 228 O HOH D 233 1.93 REMARK 500 O HOH D 234 O HOH D 245 1.93 REMARK 500 O HOH C 231 O HOH C 247 1.96 REMARK 500 O HOH B 1281 O HOH B 1282 2.00 REMARK 500 O HOH A 1226 O HOH A 1263 2.14 REMARK 500 O HOH B 1220 O HOH B 1249 2.17 REMARK 500 OD1 ASN D 27 O HOH D 202 2.18 REMARK 500 O HOH A 1231 O HOH A 1294 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP C 81 HZ2 LYS D 41 2554 1.43 REMARK 500 O HOH A 1248 O HOH A 1300 3555 1.87 REMARK 500 O HOH C 237 O HOH D 231 2554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 82 CD GLU C 82 OE2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 912 CB - CG - CD ANGL. DEV. = 20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 857 72.86 -153.39 REMARK 500 ASN B 857 85.72 -156.65 REMARK 500 ARG B 929 85.29 -155.17 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8OI3 A 829 1016 UNP A0A2U9K2V6_BRASZ DBREF2 8OI3 A A0A2U9K2V6 829 1016 DBREF1 8OI3 B 829 1016 UNP A0A2U9K2V6_BRASZ DBREF2 8OI3 B A0A2U9K2V6 829 1016 DBREF 8OI3 C 1 91 UNP Q9FLP6 SUMO2_ARATH 1 91 DBREF 8OI3 D 1 91 UNP Q9FLP6 SUMO2_ARATH 1 91 SEQADV 8OI3 MET A 809 UNP A0A2U9K2V INITIATING METHIONINE SEQADV 8OI3 GLY A 810 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER A 811 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER A 812 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 813 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 814 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 815 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 816 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 817 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 818 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER A 819 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER A 820 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 GLY A 821 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 LEU A 822 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 VAL A 823 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 PRO A 824 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 ARG A 825 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 GLY A 826 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER A 827 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS A 828 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 MET B 809 UNP A0A2U9K2V INITIATING METHIONINE SEQADV 8OI3 GLY B 810 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER B 811 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER B 812 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 813 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 814 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 815 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 816 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 817 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 818 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER B 819 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER B 820 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 GLY B 821 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 LEU B 822 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 VAL B 823 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 PRO B 824 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 ARG B 825 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 GLY B 826 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 SER B 827 UNP A0A2U9K2V EXPRESSION TAG SEQADV 8OI3 HIS B 828 UNP A0A2U9K2V EXPRESSION TAG SEQRES 1 A 208 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 208 LEU VAL PRO ARG GLY SER HIS PRO VAL LEU GLY PRO THR SEQRES 3 A 208 GLN TRP LEU GLY ASP GLU HIS ILE GLN ARG ASP TYR GLU SEQRES 4 A 208 LEU LEU ALA GLN GLU LEU GLN GLN ASN ASN PRO ASP LEU SEQRES 5 A 208 ALA ALA ARG THR ARG PHE VAL ASP PRO LEU ILE ALA GLN SEQRES 6 A 208 MET LEU ARG SER PRO SER LYS GLU VAL ALA GLU ARG ALA SEQRES 7 A 208 LEU GLY TRP VAL ARG PRO GLY THR ALA ASP PHE LEU PHE SEQRES 8 A 208 LEU PRO VAL SER ASP ALA SER ASP THR ASP ARG HIS GLN SEQRES 9 A 208 ARG GLY SER HIS TRP SER LEU LEU LEU VAL ASP ARG ARG SEQRES 10 A 208 ASP ARG GLY ARG ARG VAL ALA TYR HIS TYR ASP SER THR SEQRES 11 A 208 GLN GLY TYR ASN ASP GLY LEU ALA ALA GLU LEU ALA GLY SEQRES 12 A 208 ARG LEU ASP ALA ASN LEU GLN GLN ALA PRO ILE ARG GLN SEQRES 13 A 208 GLN GLN ASN SER TYR ASP CYS GLY VAL PHE VAL LEU ASP SEQRES 14 A 208 GLY THR ARG GLU LEU VAL ARG ARG LEU ALA ALA ARG ARG SEQRES 15 A 208 PRO ASP LEU ASN LEU ASN ASN LEU VAL ILE SER ARG GLN SEQRES 16 A 208 GLU LEU ARG ASP ARG LEU GLY ALA GLY VAL GLY PHE ASN SEQRES 1 B 208 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 208 LEU VAL PRO ARG GLY SER HIS PRO VAL LEU GLY PRO THR SEQRES 3 B 208 GLN TRP LEU GLY ASP GLU HIS ILE GLN ARG ASP TYR GLU SEQRES 4 B 208 LEU LEU ALA GLN GLU LEU GLN GLN ASN ASN PRO ASP LEU SEQRES 5 B 208 ALA ALA ARG THR ARG PHE VAL ASP PRO LEU ILE ALA GLN SEQRES 6 B 208 MET LEU ARG SER PRO SER LYS GLU VAL ALA GLU ARG ALA SEQRES 7 B 208 LEU GLY TRP VAL ARG PRO GLY THR ALA ASP PHE LEU PHE SEQRES 8 B 208 LEU PRO VAL SER ASP ALA SER ASP THR ASP ARG HIS GLN SEQRES 9 B 208 ARG GLY SER HIS TRP SER LEU LEU LEU VAL ASP ARG ARG SEQRES 10 B 208 ASP ARG GLY ARG ARG VAL ALA TYR HIS TYR ASP SER THR SEQRES 11 B 208 GLN GLY TYR ASN ASP GLY LEU ALA ALA GLU LEU ALA GLY SEQRES 12 B 208 ARG LEU ASP ALA ASN LEU GLN GLN ALA PRO ILE ARG GLN SEQRES 13 B 208 GLN GLN ASN SER TYR ASP CYS GLY VAL PHE VAL LEU ASP SEQRES 14 B 208 GLY THR ARG GLU LEU VAL ARG ARG LEU ALA ALA ARG ARG SEQRES 15 B 208 PRO ASP LEU ASN LEU ASN ASN LEU VAL ILE SER ARG GLN SEQRES 16 B 208 GLU LEU ARG ASP ARG LEU GLY ALA GLY VAL GLY PHE ASN SEQRES 1 C 91 MET SER ALA THR PRO GLU GLU ASP LYS LYS PRO ASP GLN SEQRES 2 C 91 GLY ALA HIS ILE ASN LEU LYS VAL LYS GLY GLN ASP GLY SEQRES 3 C 91 ASN GLU VAL PHE PHE ARG ILE LYS ARG SER THR GLN LEU SEQRES 4 C 91 LYS LYS LEU MET ASN ALA TYR CYS ASP ARG GLN SER VAL SEQRES 5 C 91 ASP PHE ASN SER ILE ALA PHE LEU PHE ASP GLY ARG ARG SEQRES 6 C 91 LEU ARG ALA GLU GLN THR PRO ASP GLU LEU GLU MET GLU SEQRES 7 C 91 ASP GLY ASP GLU ILE ASP ALA MET LEU HIS GLN THR GLY SEQRES 1 D 91 MET SER ALA THR PRO GLU GLU ASP LYS LYS PRO ASP GLN SEQRES 2 D 91 GLY ALA HIS ILE ASN LEU LYS VAL LYS GLY GLN ASP GLY SEQRES 3 D 91 ASN GLU VAL PHE PHE ARG ILE LYS ARG SER THR GLN LEU SEQRES 4 D 91 LYS LYS LEU MET ASN ALA TYR CYS ASP ARG GLN SER VAL SEQRES 5 D 91 ASP PHE ASN SER ILE ALA PHE LEU PHE ASP GLY ARG ARG SEQRES 6 D 91 LEU ARG ALA GLU GLN THR PRO ASP GLU LEU GLU MET GLU SEQRES 7 D 91 ASP GLY ASP GLU ILE ASP ALA MET LEU HIS GLN THR GLY HET AYE A1101 11 HET AYE B1101 11 HETNAM AYE PROP-2-EN-1-AMINE HETSYN AYE ALLYLAMINE FORMUL 5 AYE 2(C3 H7 N) FORMUL 7 HOH *305(H2 O) HELIX 1 AA1 ASP A 839 ASN A 857 1 19 HELIX 2 AA2 ASN A 857 ARG A 863 1 7 HELIX 3 AA3 ASP A 868 ARG A 876 1 9 HELIX 4 AA4 SER A 879 ARG A 891 1 13 HELIX 5 AA5 PRO A 892 ALA A 895 5 4 HELIX 6 AA6 ASN A 942 LEU A 953 1 12 HELIX 7 AA7 ASP A 970 ALA A 988 1 19 HELIX 8 AA8 SER A 1001 ALA A 1011 1 11 HELIX 9 AA9 ASP B 839 ASN B 857 1 19 HELIX 10 AB1 ASN B 857 ARG B 863 1 7 HELIX 11 AB2 ASP B 868 ARG B 876 1 9 HELIX 12 AB3 SER B 879 ARG B 891 1 13 HELIX 13 AB4 PRO B 892 ALA B 895 5 4 HELIX 14 AB5 ASN B 942 LEU B 953 1 12 HELIX 15 AB6 ASP B 970 ALA B 988 1 19 HELIX 16 AB7 SER B 1001 GLY B 1010 1 10 HELIX 17 AB8 LEU C 39 SER C 51 1 13 HELIX 18 AB9 ASP C 53 ASN C 55 5 3 HELIX 19 AC1 THR C 71 GLU C 76 1 6 HELIX 20 AC2 LEU D 39 SER D 51 1 13 HELIX 21 AC3 ASP D 53 ASN D 55 5 3 SHEET 1 AA1 2 LEU A 837 GLY A 838 0 SHEET 2 AA1 2 THR D 90 GLY D 91 -1 O GLY D 91 N LEU A 837 SHEET 1 AA2 5 THR A 864 PHE A 866 0 SHEET 2 AA2 5 PHE A 897 SER A 903 1 O PHE A 899 N ARG A 865 SHEET 3 AA2 5 TRP A 917 ASP A 923 -1 O SER A 918 N VAL A 902 SHEET 4 AA2 5 VAL A 931 TYR A 935 -1 O TYR A 933 N LEU A 921 SHEET 5 AA2 5 ASN A 956 ALA A 960 1 O ASN A 956 N ALA A 932 SHEET 1 AA3 2 LEU B 837 GLY B 838 0 SHEET 2 AA3 2 THR C 90 GLY C 91 -1 O GLY C 91 N LEU B 837 SHEET 1 AA4 5 THR B 864 PHE B 866 0 SHEET 2 AA4 5 PHE B 897 SER B 903 1 O PHE B 899 N ARG B 865 SHEET 3 AA4 5 TRP B 917 ASP B 923 -1 O SER B 918 N VAL B 902 SHEET 4 AA4 5 VAL B 931 TYR B 935 -1 O TYR B 933 N LEU B 921 SHEET 5 AA4 5 ASN B 956 GLN B 959 1 O ASN B 956 N ALA B 932 SHEET 1 AA5 5 GLU C 28 LYS C 34 0 SHEET 2 AA5 5 HIS C 16 GLY C 23 -1 N VAL C 21 O VAL C 29 SHEET 3 AA5 5 GLU C 82 LEU C 87 1 O ILE C 83 N LYS C 20 SHEET 4 AA5 5 ILE C 57 PHE C 61 -1 N LEU C 60 O ASP C 84 SHEET 5 AA5 5 ARG C 64 ARG C 65 -1 O ARG C 64 N PHE C 61 SHEET 1 AA6 5 GLU D 28 LYS D 34 0 SHEET 2 AA6 5 HIS D 16 GLY D 23 -1 N LEU D 19 O PHE D 31 SHEET 3 AA6 5 ASP D 81 LEU D 87 1 O ILE D 83 N LYS D 20 SHEET 4 AA6 5 ILE D 57 PHE D 61 -1 N ALA D 58 O MET D 86 SHEET 5 AA6 5 ARG D 64 ARG D 65 -1 O ARG D 64 N PHE D 61 LINK SG CYS A 971 C2 AYE A1101 1555 1555 1.69 LINK N1 AYE A1101 C GLY D 91 1555 1555 1.43 LINK SG CYS B 971 C2 AYE B1101 1555 1555 1.68 LINK N1 AYE B1101 C GLY C 91 1555 1555 1.43 CRYST1 80.851 86.826 90.485 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011052 0.00000 CONECT 2262 8345 CONECT 5205 8356 CONECT 7096 8359 CONECT 8339 8348 CONECT 8345 2262 8346 8347 8349 CONECT 8346 8345 8350 8351 CONECT 8347 8345 8348 8352 8353 CONECT 8348 8339 8347 8354 8355 CONECT 8349 8345 CONECT 8350 8346 CONECT 8351 8346 CONECT 8352 8347 CONECT 8353 8347 CONECT 8354 8348 CONECT 8355 8348 CONECT 8356 5205 8357 8358 8360 CONECT 8357 8356 8361 8362 CONECT 8358 8356 8359 8363 8364 CONECT 8359 7096 8358 8365 8366 CONECT 8360 8356 CONECT 8361 8357 CONECT 8362 8357 CONECT 8363 8358 CONECT 8364 8358 CONECT 8365 8359 CONECT 8366 8359 MASTER 424 0 2 21 24 0 0 6 4497 4 26 46 END